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1.
Mol Plant Microbe Interact ; 35(9): 779-790, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35617509

ABSTRACT

Asian soybean rust, caused by the fungus Phakopsora pachyrhizi, is one of the most important diseases affecting soybean production in tropical areas. During infection, P. pachyrhizi secretes proteins from haustoria that are transferred into plant cells to promote virulence. To date, only one candidate P. pachyrhizi effector protein has been characterized in detail to understand the mechanism by which it suppresses plant defenses to enhance infection. Here, we aimed to extend understanding of the pathogenic mechanisms of P. pachyrhizi based on the discovery of host proteins that interact with the effector candidate Phapa-7431740. We demonstrated that Phapa-7431740 suppresses pathogen-associated molecular pattern-triggered immunity (PTI) and that it interacts with a soybean glucan endo-1,3-ß-glucosidase (GmßGLU), a pathogenesis-related (PR) protein belonging to the PR-2 family. Structural and phylogenetic characterization of the PR-2 protein family predicted in the soybean genome and comparison to PR-2 family members in Arabidopsis thaliana and cotton, demonstrated that GmßGLU is a type IV ß-1,3-glucanase. Transcriptional profiling during an infection time course showed that the GmßGLU mRNA is highly induced during the initial hours after infection, coinciding with peak of expression of Phapa-7431740. The effector was able to interfere with the activity of GmßGLU in vitro, with a dose-dependent inhibition. Our results suggest that Phapa-7431740 may suppress PTI by interfering with glucan endo-1,3-ß-glucosidase activity. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 "No Rights Reserved" license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2022.


Subject(s)
Arabidopsis , Phakopsora pachyrhizi , Arabidopsis/microbiology , Gene Expression Regulation, Plant , Glucans/metabolism , Host-Pathogen Interactions , Pathogen-Associated Molecular Pattern Molecules/metabolism , Phakopsora pachyrhizi/metabolism , Phylogeny , Plant Diseases/microbiology , RNA, Messenger/metabolism , Glycine max/microbiology , Virulence , beta-Glucosidase/metabolism
2.
Fungal Genet Biol ; 157: 103624, 2021 12.
Article in English | MEDLINE | ID: mdl-34536506

ABSTRACT

The yeast Spathaspora passalidarum is able to produce ethanol from D-xylose and D-glucose. However, it is not clear how xylose metabolism is affected by D-glucose when both sugars are available in the culture medium. The aims of this work were to evaluate the influence of D-glucose on D-xylose consumption, ethanol production, gene expression, and the activity of key xylose-metabolism enzymes under both aerobic and oxygen-limited conditions. Ethanol yields and productivities were increased in culture media containing D-xylose as the sole carbon source or a mixture of D-xylose and D-glucose. S. passalidarum preferentially consumed D-glucose in the co-fermentations, which is consistent with the reduction in expression of genes encoding the key xylose-metabolism enzymes. In the presence of D-glucose, the specific activities of xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase (XK) were lower. Interestingly, in accordance with other studies, the presence of 2-deoxyglucose (2DG) did not inhibit the growth of S. passalidarum in culture medium containing D-xylose as the sole carbon source. This indicates that a non-canonical repression pathway is acting in S. passalidarum. In conclusion, the results suggest that D-glucose inhibits D-xylose consumption and prevents the D-xylose-mediated induction of the genes encoding XR, XDH, and XK.


Subject(s)
Saccharomycetales , Xylose , Glucose , Saccharomyces cerevisiae
3.
Funct Integr Genomics ; 15(6): 685-96, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26013145

ABSTRACT

Asian soybean rust (ASR), caused by the obligate biotrophic fungus Phakopsora pachyrhizi, is one of most important diseases in the soybean (Glycine max (L.) Merr.) agribusiness. The identification and characterization of genes related to plant defense responses to fungal infection are essential to develop ASR-resistant plants. In this work, we describe four soybean genes, GmbZIP62, GmbZIP105, GmbZIPE1, and GmbZIPE2, which encode transcription factors containing a basic leucine zipper (bZIP) domain from two divergent classes, and that are responsive to P. pachyrhizi infection. Molecular phylogenetic analyses demonstrated that these genes encode proteins similar to bZIP factors responsive to pathogens. Yeast transactivation assays showed that only GmbZIP62 has strong transactivation activity in yeast. In addition, three of the bZIP transcription factors analyzed were also differentially expressed by plant defense hormones, and all were differentially expressed by fungal attack, indicating that these proteins might participate in response to ASR infection. The results suggested that these bZIP proteins are part of the plant defense response to P. pachyrhizi infection, by regulating the gene expression related to ASR infection responses. These bZIP genes are potential targets to obtain new soybean genotypes resistant to ASR.


Subject(s)
Gene Expression Regulation, Plant , Glycine max/microbiology , Plant Proteins/genetics , Transcription Factors/genetics , Phakopsora pachyrhizi/pathogenicity , Plant Proteins/chemistry , Plant Proteins/metabolism , Glycine max/genetics , Glycine max/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism , Zinc Fingers
4.
Pesqui. vet. bras ; 34(3): 233-240, mar. 2014. graf
Article in Portuguese | LILACS | ID: lil-709871

ABSTRACT

[...]The objective of this study was to evaluate type I and III collagen gene expression during different phases of the healing process of PRP-treated skin. Eight healthy crossbred geldings, aged 16 and 17 years (16.37±0.52) were used. Three quadrangular-shaped lesions (6.25cm²) were surgically induced in the right and left gluteal regions of all the animals. Twelve hours after induction of the lesions, 0.5mL of PRP was administered in each of the four edges of the wounds (T=treated group) in one of the gluteal regions, randomly chosen. The contralateral region was used as control (NT=non-treated group). The wounds were submitted to daily cleaning with Milli-Q water, and the samples were obtained with a 6mm diameter biopsy Punch. Six skin biopsies were obtained, with the first being performed on the day the lesions were induced (T0), and the others 1 (T1), 2 (T2), 7 (T3), and 14 (T4) days, after the wound was induced. The sixth biopsy (T5) was performed after fully healed of the skin. Evaluation of type I and III collagen gene expression was carried out by the qRT-PCR technique. The data were analyzed by the Bonferroni test, Student t-test, paired t-test, and regression analysis (p<0,05). Difference (p<0.05) between groups were observed for both collagen gene expressions from T1 to T4, being higher in the animals of group T. The peak for type I and III collagen gene expressions occurred in T5 for both groups, but the highest expression was different (p<0.05) from zero time, starting in T3. In the animals of treated group, collagen expression started to establish at T5, while in the horses of NT group, the values remained increased. Local administration of a single PRP dose in cutaneous wound of the gluteal region of horses results in a higher local gene expression of type I and III collagens. However, this expression does not alter the maximum time of macroscopic healing of the wound.


[...] Objetivou-se avaliar a expressão dos genes dos colágenos tipos I e III durante diferentes fases do processo de cicatrização da pele tratada com PRP. Foram utilizados oito equinos machos castrados, mestiços, hígidos, com idade entre 16 e 17 (16,37±0,52) anos. Três feridas em formato quadrangular (6,25cm²) foram confeccionadas nas regiões glúteas direita e esquerda de todos os animais. Doze horas após indução das lesões, 0,5mL do PRP foi administrado em cada uma das quatro extremidades das feridas (T=grupo tratado), de uma das regiões glúteas, escolhida aleatoriamente. A região contralateral foi utilizada como controle (NT=grupo não tratado). As feridas foram submetidas à limpeza diária com água Milli Q, e amostras foram obtidas com biópsias utilizando-se Punch de 6mm de diâmetro. Seis biópsias de pele foram obtidas a primeira no dia de indução das lesões (T0), e as demais com 1 (T1) 2 (T2) 7 (T3) e 14 (T4) dias após a realização das feridas. A sexta biópsia (T5) foi realizada após o completo fechamento da pele. A avaliação da expressão dos genes dos colágenos tipos I e III foi realizada pela técnica qRT-PCR e os dados analisados pelo teste de Bonferroni, t de Student, t pareado e análise de regressão (p<0,05). Diferenças (p<0,05), entre grupos, foram observadas para a expressão de ambos os colágenos nos T1 a T4, sendo maior nos animais do grupo T. O pico de expressão dos colágenos tipos I e III ocorreu no T5 para ambos os grupos, mas a maior expressão foi diferente (p<0,05) do tempo zero a partir do T3. Nos animais do grupo tratado a expressão dos colágenos começou a estabilizar no T5, enquanto que nos equinos do NT os valores permaneceram elevados. A administração local de uma única dose do PRP em ferida cutânea na região glútea de equinos, resulta em maior expressão gênica local dos colágenos tipos I e III. Entretanto, essa expressão não altera o tempo máximo de fechamento macroscópico da ferida.


Subject(s)
Animals , Male , Platelet Activation , Collagen Type I , Collagen Type II , Wound Healing/physiology , Gene Expression , Horses , Platelet-Rich Plasma , Occlusive Dressings/veterinary , Polymerase Chain Reaction/veterinary
5.
Appl Microbiol Biotechnol ; 98(8): 3829-40, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24535257

ABSTRACT

The conversion of lignocellulose into fermentable sugars is considered a promising alternative for increasing ethanol production. Higher fermentation yield has been achieved through the process of simultaneous saccharification and fermentation (SSF). In this study, a comparison was performed between the yeast species Saccharomyces cerevisiae and Kluyveromyces marxianus for their potential use in SSF process. Three strains of S. cerevisiae were evaluated: two are widely used in the Brazilian ethanol industry (CAT-1 and PE-2), and one has been isolated based on its capacity to grow and ferment at 42 °C (LBM-1). In addition, we used thermotolerant strains of K. marxianus. Two strains were obtained from biological collections, ATCC 8554 and CCT 4086, and one strain was isolated based on its fermentative capacity (UFV-3). SSF experiments revealed that S. cerevisiae industrial strains (CAT-1 and PE-2) have the potential to produce cellulosic ethanol once ethanol had presented yields similar to yields from thermotolerant strains. The industrial strains are more tolerant to ethanol and had already been adapted to industrial conditions. Moreover, the study shows that although the K. marxianus strains have fermentative capacities similar to strains of S. cerevisiae, they have low tolerance to ethanol. This characteristic is an important target for enhancing the performance of this yeast in ethanol production.


Subject(s)
Cellulose/metabolism , Ethanol/metabolism , Industrial Microbiology , Kluyveromyces/metabolism , Saccharomyces cerevisiae/metabolism , Brazil , Drug Tolerance , Ethanol/toxicity , Fermentation , Kluyveromyces/growth & development , Saccharomyces cerevisiae/growth & development
6.
Appl Biochem Biotechnol ; 172(5): 2412-24, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24390854

ABSTRACT

An extracellular ß-glucanase secreted by Kluyveromyces marxianus was identified for the first time. The optimal conditions for the production of this enzyme were evaluated by response surface methodology. The optimal conditions to produce ß-glucanase were a glucose concentration of 4% (w/v), a pH of 5.5, and an incubation temperature of 35 °C. Response surface methodology was also used to determine the pH and temperature required for the optimal enzymatic activity. The highest enzyme activity was obtained at a pH of 5.5 and a temperature of 55 °C. Furthermore, the enzyme was partially purified and sequenced, and its specificity for different substrates was evaluated. The results suggest that the enzyme is an endo-ß-1,3(4)-glucanase. After optimizing the conditions for ß-glucanase production, the culture supernatant was found to be effective in digesting the cell wall of the yeast Saccharomyces cerevisiae, showing the great potential of ß-glucanase in the biotechnological production of soluble ß-glucan.


Subject(s)
Fungal Proteins/biosynthesis , Glycoside Hydrolases/biosynthesis , Kluyveromyces/enzymology , beta-Glucans/metabolism , Amino Acid Sequence , Cell Wall/metabolism , Factor Analysis, Statistical , Fermentation , Fungal Proteins/metabolism , Glucose/metabolism , Glycoside Hydrolases/metabolism , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , Saccharomyces cerevisiae/chemistry , Sequence Alignment , Substrate Specificity , Temperature
7.
Proteomes ; 2(1): 85-106, 2014 Mar 04.
Article in English | MEDLINE | ID: mdl-28250372

ABSTRACT

Responses to biotic stress in plants lead to dramatic reprogramming of gene expression, favoring stress responses at the expense of normal cellular functions. Transcription factors are master regulators of gene expression at the transcriptional level, and controlling the activity of these factors alters the transcriptome of the plant, leading to metabolic and phenotypic changes in response to stress. The functional analysis of interactions between transcription factors and other proteins is very important for elucidating the role of these transcriptional regulators in different signaling cascades. In this review, we present an overview of protein-protein interactions for the six major families of transcription factors involved in plant defense: basic leucine zipper containing domain proteins (bZIP), amino-acid sequence WRKYGQK (WRKY), myelocytomatosis related proteins (MYC), myeloblastosis related proteins (MYB), APETALA2/ ETHYLENE-RESPONSIVE ELEMENT BINDING FACTORS (AP2/EREBP) and no apical meristem (NAM), Arabidopsis transcription activation factor (ATAF), and cup-shaped cotyledon (CUC) (NAC). We describe the interaction partners of these transcription factors as molecular responses during pathogen attack and the key components of signal transduction pathways that take place during plant defense responses. These interactions determine the activation or repression of response pathways and are crucial to understanding the regulatory networks that modulate plant defense responses.

8.
Int J Mol Sci ; 14(4): 7815-28, 2013 Apr 10.
Article in English | MEDLINE | ID: mdl-23574941

ABSTRACT

Transcription factors of the basic leucine zipper (bZIP) family control important processes in all eukaryotes. In plants, bZIPs are master regulators of many central developmental and physiological processes, including morphogenesis, seed formation, abiotic and biotic stress responses. Modulation of the expression patterns of bZIP genes and changes in their activity often contribute to the activation of various signaling pathways and regulatory networks of different physiological processes. However, most advances in the study of plant bZIP transcription factors are related to their involvement in abiotic stress and development. In contrast, there are few examples of functional research with regard to biotic stress, particularly in the defense against pathogens. In this review, we summarize the recent progress revealing the role of bZIP transcription factors in the biotic stress responses of several plant species, from Arabidopsis to cotton. Moreover, we summarize the interacting partners of bZIP proteins in molecular responses during pathogen attack and the key components of the signal transduction pathways with which they physically interact during plant defense responses. Lastly, we focus on the recent advances regarding research on the functional role of bZIPs in major agricultural cultivars and examine the studies performed in this field.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Basic-Leucine Zipper Transcription Factors/metabolism , Disease Resistance/physiology , Gossypium/metabolism , Plant Diseases , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Basic-Leucine Zipper Transcription Factors/genetics , Gossypium/genetics
9.
Bioresour Technol ; 109: 63-9, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22285296

ABSTRACT

Ethanol can be produced from cellulosic biomass in a process known as simultaneous saccharification and fermentation (SSF). The presence of yeast together with the cellulolytic enzyme complex reduces the accumulation of sugars within the reactor, increasing the ethanol yield and saccharification rate. This paper reports the isolation of Saccharomyces cerevisiae LBM-1, a strain capable of growth at 42 °C. In addition, S. cerevisiae LBM-1 and Kluyveromyces marxianus UFV-3 were able to ferment sugar cane bagasse in SSF processes at 37 and 42 °C. Higher ethanol yields were observed when fermentation was initiated after presaccharification at 50°C than at 37 or 42° C. Furthermore, the volumetric productivity of fermentation increased with presaccharification time, from 0.43 g/L/h at 0 h to 1.79 g/L/h after 72 h of presaccharification. The results suggest that the use of thermotolerant yeasts and a presaccharification stage are key to increasing yields in this process.


Subject(s)
Biotechnology/methods , Carbohydrate Metabolism , Ethanol/metabolism , Fermentation/physiology , Saccharum/chemistry , Temperature , Yeasts/metabolism , Cellulose/chemistry , Glucose/metabolism , Hydrolysis , Kluyveromyces/cytology , Kluyveromyces/growth & development , Kluyveromyces/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae/metabolism , Time Factors , Yeasts/cytology , Yeasts/growth & development
10.
Antonie Van Leeuwenhoek ; 101(3): 541-50, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22068918

ABSTRACT

The aim of this work was to obtain insights about the factors that determine the lactose fermentative metabolism of Kluyveromyces marxianus UFV-3. K. marxianus UFV-3 and Kluyveromyces lactis JA6 were cultured in a minimal medium containing different lactose concentrations (ranging from 0.25 to 64 mmol l(-1)) under aerobic and hypoxic conditions to evaluate their growth kinetics, gene expression and enzymatic activity. The increase in lactose concentration and the decrease in oxygen level favoured ethanol yield for both yeasts but in K. marxianus UFV-3 the effect was more pronounced. Under hypoxic conditions, the activities of ß-galactosidase and pyruvate decarboxylase from K. marxianus UFV-3 were significantly higher than those in K. lactis JA6. The expression of the LAC4 (ß-galactosidase), RAG6 (pyruvate decarboxylase), GAL7 (galactose-1-phosphate uridylyltransferase) and GAL10 (epimerase) genes in K. marxianus UFV-3 was higher under hypoxic conditions than under aerobic conditions. The high expression of genes of the Leloir pathway, LAC4 and RAG6, associated with the high activity of ß-galactosidase and pyruvate decarboxylase contribute to the high fermentative flux in K. marxianus UFV-3. These data on the fermentative metabolism of K. marxianus UFV-3 will be useful for optimising the conversion of cheese whey lactose to ethanol.


Subject(s)
Fungal Proteins/metabolism , Industrial Microbiology/methods , Kluyveromyces/metabolism , Lactose/metabolism , Mycology/methods , Aerobiosis , Anaerobiosis , Biomass , Culture Media , Dairy Products , Enzyme Induction , Ethanol/metabolism , Fermentation , Fungal Proteins/genetics , Gene Expression Regulation, Fungal , Kluyveromyces/enzymology , Kluyveromyces/genetics , Kluyveromyces/growth & development , Pyruvate Decarboxylase/genetics , Pyruvate Decarboxylase/metabolism , RNA, Fungal/genetics , Real-Time Polymerase Chain Reaction , Species Specificity , UDPglucose 4-Epimerase/genetics , UDPglucose 4-Epimerase/metabolism , UDPglucose-Hexose-1-Phosphate Uridylyltransferase/genetics , UDPglucose-Hexose-1-Phosphate Uridylyltransferase/metabolism , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
11.
Plant Signal Behav ; 6(12): 1993-6, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22105026

ABSTRACT

The Early Responsive to Dehydration (ERD) genes are defined as those genes that are rapidly activated during drought stress. The encoded proteins show a great structural and functional diversity, with a particular class of proteins acting as connectors of stress response pathways. Recent studies have shown that ERD15 proteins from different species of plants operate in cross-talk among different response pathways. In this mini-review, we show the recent progress on the functional role of this diverse family of proteins and demonstrate that a soybean ERD15 homolog can act as a connector in stress response pathways that trigger a programmed cell death signal.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Dehydration/genetics , Signal Transduction , Transcription Factors/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Droughts , Endoplasmic Reticulum Stress , Gene Expression Regulation, Plant , Glycine max/genetics , Glycine max/physiology , Stress, Physiological , Transcription Factors/genetics
12.
J Biol Chem ; 286(22): 20020-30, 2011 Jun 03.
Article in English | MEDLINE | ID: mdl-21482825

ABSTRACT

As in all other eukaryotic organisms, endoplasmic reticulum (ER) stress triggers the evolutionarily conserved unfolded protein response in soybean, but it also communicates with other adaptive signaling responses, such as osmotic stress-induced and ER stress-induced programmed cell death. These two signaling pathways converge at the level of gene transcription to activate an integrated cascade that is mediated by N-rich proteins (NRPs). Here, we describe a novel transcription factor, GmERD15 (Glycine max Early Responsive to Dehydration 15), which is induced by ER stress and osmotic stress to activate the expression of NRP genes. GmERD15 was isolated because of its capacity to stably associate with the NRP-B promoter in yeast. It specifically binds to a 187-bp fragment of the NRP-B promoter in vitro and activates the transcription of a reporter gene in yeast. Furthermore, GmERD15 was found in both the cytoplasm and the nucleus, and a ChIP assay revealed that it binds to the NRP-B promoter in vivo. Expression of GmERD15 in soybean protoplasts activated the NRP-B promoter and induced expression of the NRP-B gene. Collectively, these results support the interpretation that GmERD15 functions as an upstream component of stress-induced NRP-B-mediated signaling to connect stress in the ER to an osmotic stress-induced cell death signal.


Subject(s)
Endoplasmic Reticulum/metabolism , Glycine max/metabolism , Plant Proteins/metabolism , Signal Transduction/physiology , Transcription Factors/metabolism , Unfolded Protein Response/physiology , Cell Death/physiology , Cell Nucleus/genetics , Cell Nucleus/metabolism , Cytoplasm/genetics , Cytoplasm/metabolism , Endoplasmic Reticulum/genetics , Osmotic Pressure , Plant Proteins/genetics , Promoter Regions, Genetic/physiology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Glycine max/genetics , Transcription Factors/genetics
13.
FEMS Yeast Res ; 11(3): 243-51, 2011 May.
Article in English | MEDLINE | ID: mdl-21205157

ABSTRACT

Kluyveromyces lactis Lac12 permease mediates lactose and low-affinity galactose transports. In this study we investigated the effects of carbon sources on internalization of Lac12 using a LAC12-GFP fusion construct. When galactose- or lactose-grown cells are shifted to a fresh sugar medium, Lac12-GFP is removed from the plasma membrane and is localized intracellularly. Surprisingly, either galactose or lactose in the new media caused the internalization, and cells responded differently to these two sugars. Our results reveal that this process is dependent on sugar species and also sugar concentration. Lac12-GFP internalization causes reduction of [C(14) ]lactose uptake rates and also occurs in a Klsnf1 mutant strain; it is therefore independent of KlSnf1 activity. We suggest that glucose-6-phosphate is the intracellular signal, as internalization was induced by 2-deoxyglucose, and inhibition of phosphoglucomutase by lithium prevented galactose- but not lactose- or glucose-induced internalization. Lac12-GFP internalization was not triggered by 6-deoxyglucose, and was irreversible in the absence of protein synthesis.


Subject(s)
Catabolite Repression , Galactose/metabolism , Glucose-6-Phosphate/metabolism , Kluyveromyces/metabolism , Lactose/metabolism , Monosaccharide Transport Proteins/metabolism , Carbon Isotopes/analysis , Cell Membrane/enzymology , Deoxyglucose/metabolism , Deoxyglucose/pharmacology , Fungal Proteins/genetics , Fungal Proteins/metabolism , Galactose/pharmacology , Glucose/metabolism , Glucose/pharmacology , Glucose-6-Phosphate/pharmacology , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Intracellular Space/enzymology , Kluyveromyces/enzymology , Kluyveromyces/genetics , Lactose/pharmacology , Lithium/pharmacology , Microscopy, Fluorescence , Monosaccharide Transport Proteins/genetics , Phenotype , Phosphoglucomutase/antagonists & inhibitors , Phosphoglucomutase/metabolism , Protein Serine-Threonine Kinases/metabolism , Protein Transport , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Signal Transduction , Time Factors
14.
Gene ; 444(1-2): 10-23, 2009 Sep 01.
Article in English | MEDLINE | ID: mdl-19497355

ABSTRACT

We performed an inventory of soybean NAC transcription factors, in which 101 NAC domain-containing proteins were annotated into 15 different subgroups, showing a clear relationship between structure and function. The six previously described GmNAC proteins (GmNAC1 to GmNAC6) were located in the nucleus and a transactivation assay in yeast confirmed that GmNAC2, GmNAC3, GmNAC4 and GmNAC5 function as transactivators. We also analyzed the expression of the six NAC genes in response to a variety of stress conditions. GmNAC2, GmNAC3 and GmNAC4 were strongly induced by osmotic stress. GmNAC3 and GmNAC4 were also induced by ABA, JA and salinity but differed in their response to cold. Consistent with an involvement in cell death programs, the transient expression of GmNAC1, GmNAC5 and GmNAC6 in tobacco leaves resulted in cell death and enhanced expression of senescence markers. Our results indicate that the described soybean NACs are functionally non-redundant transcription factors involved in response to abiotic stresses and in cell death events in soybean.


Subject(s)
Glycine max/metabolism , Plant Proteins/metabolism , Transcription Factors/metabolism , Amino Acid Sequence , Cell Nucleus/metabolism , Cells, Cultured , Conserved Sequence , Gene Expression Regulation, Plant , Osmotic Pressure , Phylogeny , Plant Leaves/metabolism , Plant Proteins/genetics , Stress, Physiological , Nicotiana/metabolism , Transcription Factors/genetics
15.
BMC Bioinformatics ; 10: 194, 2009 Jun 25.
Article in English | MEDLINE | ID: mdl-19555482

ABSTRACT

BACKGROUND: Protein secretion is a cell translocation process of major biological and technological significance. The secretion and downstream processing of proteins by recombinant cells is of great commercial interest. The yeast Kluyveromyces lactis is considered a promising host for heterologous protein production. Because yeasts naturally do not secrete as many proteins as filamentous fungi, they can produce secreted recombinant proteins with few contaminants in the medium. An ideal system to address the secretion of a desired protein could be exploited among the native proteins in certain physiological conditions. By applying algorithms to the completed K. lactis genome sequence, such a system could be selected. To this end, we predicted protein subcellular locations and correlated the resulting extracellular secretome with the transcription factors that modulate the cellular response to a particular environmental stimulus. RESULTS: To explore the potential Kluyveromyces lactis extracellular secretome, four computational prediction algorithms were applied to 5076 predicted K. lactis proteins from the genome database. SignalP v3 identified 418 proteins with N-terminal signal peptides. From these 418 proteins, the Phobius algorithm predicted that 176 proteins have no transmembrane domains, and the big-PI Predictor identified 150 proteins as having no glycosylphosphatidylinositol (GPI) modification sites. WoLF PSORT predicted that the K. lactis secretome consists of 109 putative proteins, excluding subcellular targeting. The transcription regulators of the putative extracellular proteins were investigated by searching for DNA binding sites in their putative promoters. The conditions to favor expression were obtained by searching Gene Ontology terms and using graph theory. CONCLUSION: A public database of K. lactis secreted proteins and their transcription factors are presented. It consists of 109 ORFs and 23 transcription factors. A graph created from this database shows 134 nodes and 884 edges, suggesting a vast number of relationships to be validated experimentally. Most of the transcription factors are related to responses to stress such as drug, acid and heat resistance, as well as nitrogen limitation, and may be useful for inducing maximal expression of potential extracellular proteins.


Subject(s)
Computational Biology/methods , Fungal Proteins/chemistry , Kluyveromyces/metabolism , Proteome/chemistry , Transcription Factors/chemistry , Algorithms , Genome, Fungal
16.
J Exp Bot ; 60(2): 533-46, 2009.
Article in English | MEDLINE | ID: mdl-19052255

ABSTRACT

The ER-resident molecular chaperone BiP (binding protein) was overexpressed in soybean. When plants growing in soil were exposed to drought (by reducing or completely withholding watering) the wild-type lines showed a large decrease in leaf water potential and leaf wilting, but the leaves in the transgenic lines did not wilt and exhibited only a small decrease in water potential. During exposure to drought the stomata of the transgenic lines did not close as much as in the wild type, and the rates of photosynthesis and transpiration became less inhibited than in the wild type. These parameters of drought resistance in the BiP overexpressing lines were not associated with a higher level of the osmolytes proline, sucrose, and glucose. It was also not associated with the typical drought-induced increase in root dry weight. Rather, at the end of the drought period, the BiP overexpressing lines had a lower level of the osmolytes and root weight than the wild type. The mRNA abundance of several typical drought-induced genes [NAC2, a seed maturation protein (SMP), a glutathione-S-transferase (GST), antiquitin, and protein disulphide isomerase 3 (PDI-3)] increased in the drought-stressed wild-type plants. Compared with the wild type, the increase in mRNA abundance of these genes was less (in some genes much less) in the BiP overexpressing lines that were exposed to drought. The effect of drought on leaf senescence was investigated in soybean and tobacco. It had previously been reported that tobacco BiP overexpression or repression reduced or accentuated the effects of drought. BiP overexpressing tobacco and soybean showed delayed leaf senescence during drought. BiP antisense tobacco plants, conversely, showed advanced leaf senescence. It is concluded that BiP overexpression confers resistance to drought, through an as yet unknown mechanism that is related to ER functioning. The delay in leaf senescence by BiP overexpression might relate to the absence of the response to drought.


Subject(s)
Adaptation, Physiological , Droughts , Endoplasmic Reticulum/metabolism , Glycine max/physiology , Nicotiana/physiology , Plant Leaves/physiology , Plant Proteins/metabolism , Adaptation, Physiological/drug effects , Biomarkers/metabolism , Calnexin/genetics , Calnexin/metabolism , Down-Regulation/drug effects , Endoplasmic Reticulum/drug effects , Gene Expression Regulation, Plant/drug effects , Plant Leaves/drug effects , Plant Proteins/genetics , Plant Roots/drug effects , Plant Roots/growth & development , Plants, Genetically Modified , Seedlings/drug effects , Seedlings/growth & development , Glycine max/drug effects , Glycine max/genetics , Stress, Physiological/drug effects , Time Factors , Nicotiana/drug effects , Nicotiana/genetics , Transgenes , Water/pharmacology
17.
PLoS Pathog ; 4(12): e1000247, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19112492

ABSTRACT

The NSP-interacting kinase (NIK) receptor-mediated defense pathway has been identified recently as a virulence target of the geminivirus nuclear shuttle protein (NSP). However, the NIK1-NSP interaction does not fit into the elicitor-receptor model of resistance, and hence the molecular mechanism that links this antiviral response to receptor activation remains obscure. Here, we identified a ribosomal protein, rpL10A, as a specific partner and substrate of NIK1 that functions as an immediate downstream effector of NIK1-mediated response. Phosphorylation of cytosolic rpL10A by NIK1 redirects the protein to the nucleus where it may act to modulate viral infection. While ectopic expression of normal NIK1 or a hyperactive NIK1 mutant promotes the accumulation of phosphorylated rpL10A within the nuclei, an inactive NIK1 mutant fails to redirect the protein to the nuclei of co-transfected cells. Likewise, a mutant rpL10A defective for NIK1 phosphorylation is not redirected to the nucleus. Furthermore, loss of rpL10A function enhances susceptibility to geminivirus infection, resembling the phenotype of nik1 null alleles. We also provide evidence that geminivirus infection directly interferes with NIK1-mediated nuclear relocalization of rpL10A as a counterdefensive measure. However, the NIK1-mediated defense signaling neither activates RNA silencing nor promotes a hypersensitive response but inhibits plant growth and development. Although the virulence function of the particular geminivirus NSP studied here overcomes this layer of defense in Arabidopsis, the NIK1-mediated signaling response may be involved in restricting the host range of other viruses.


Subject(s)
Arabidopsis Proteins/metabolism , Cell Nucleus/metabolism , Immunity, Innate/physiology , Nuclear Proteins/physiology , Plant Viruses/immunology , Protein Serine-Threonine Kinases/metabolism , Ribosomal Proteins/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/physiology , Begomovirus/immunology , Cells, Cultured , Cytosol/metabolism , Geminiviridae/immunology , Solanum lycopersicum/genetics , Solanum lycopersicum/immunology , Solanum lycopersicum/metabolism , Models, Biological , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Phosphorylation , Plant Diseases/immunology , Plant Diseases/virology , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Proteins/physiology , Plants, Genetically Modified , Protein Binding , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/physiology , Protein Transport , Ribosomal Protein L10 , Ribosomal Proteins/genetics , Ribosomal Proteins/physiology , Substrate Specificity , Transfection
18.
J Biol Chem ; 283(29): 20209-19, 2008 Jul 18.
Article in English | MEDLINE | ID: mdl-18490446

ABSTRACT

NRPs (N-rich proteins) were identified as targets of a novel adaptive pathway that integrates endoplasmic reticulum (ER) and osmotic stress signals based on coordinate regulation and synergistic up-regulation by tunicamycin and polyethylene glycol treatments. This integrated pathway diverges from the molecular chaperone-inducing branch of the unfolded protein response (UPR) in several ways. While UPR-specific targets were inversely regulated by ER and osmotic stresses, NRPs required both signals for full activation. Furthermore, BiP (binding protein) overexpression in soybean prevented activation of the UPR by ER stress inducers, but did not affect activation of NRPs. We also found that this integrated pathway transduces a PCD signal generated by ER and osmotic stresses that result in the appearance of markers associated with leaf senescence. Overexpression of NRPs in soybean protoplasts induced caspase-3-like activity and promoted extensive DNA fragmentation. Furthermore, transient expression of NRPs in planta caused leaf yellowing, chlorophyll loss, malondialdehyde production, ethylene evolution, and induction of the senescence marker gene CP1. This phenotype was alleviated by the cytokinin zeatin, a potent senescence inhibitor. Collectively, these results indicate that ER stress induces leaf senescence through activation of plant-specific NRPs via a novel branch of the ER stress response.


Subject(s)
Endoplasmic Reticulum/metabolism , Glycine max/cytology , Glycine max/metabolism , Plant Proteins/metabolism , Signal Transduction , Asparagine/metabolism , Cell Death , Cells, Cultured , Gene Expression Regulation, Plant , Genes, Reporter/genetics , Osmosis , Plant Leaves/cytology , Plant Leaves/genetics , Plant Leaves/growth & development , Plant Leaves/metabolism , Plant Proteins/genetics , Protein Folding , Glycine max/genetics , Glycine max/growth & development , Up-Regulation
19.
FEMS Yeast Res ; 8(4): 622-30, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18399987

ABSTRACT

The plasma membrane H(+)-ATPase from Saccharomyces cerevisiae is an enzyme that plays a very important role in the yeast physiology. The addition of protonophores, such as 2,4-dinitrophenol (DNP) and carbonyl cyanide m-chlorophenylhydrazone (CCCP), also triggers a clear in vivo activation of this enzyme. Here, we demonstrate that CCCP-induced activation of the plasma membrane H(+)-ATPase shares some similarities with the sugar-induced activation of the enzyme. Phospholipase C and protein kinase C activities are essential for this activation process while Gpa2p, a G protein involved in the glucose-induced activation of the ATPase, is not required. CCCP also induces a phospholipase C-dependent increase in intracellular calcium. Moreover, we show that the availability of extracellular calcium is required for CCCP stimulation of H(+)-ATPase, suggesting a possible connection between calcium signaling and activation of ATPase.


Subject(s)
Calcium Signaling/drug effects , Carbonyl Cyanide m-Chlorophenyl Hydrazone/analogs & derivatives , Cell Membrane/enzymology , Ionophores/pharmacology , Proton-Translocating ATPases/metabolism , Saccharomyces cerevisiae/metabolism , Calcium/analysis , Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology , Cytosol/chemistry , GTP-Binding Protein alpha Subunits/metabolism , Protein Kinase C/metabolism , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae Proteins/metabolism , Type C Phospholipases/metabolism
20.
Gene ; 411(1-2): 59-68, 2008 Mar 31.
Article in English | MEDLINE | ID: mdl-18281163

ABSTRACT

HSP90 proteins are important molecular chaperones involved in multiple cellular processes. This work reports the characterization of cDNAs encoding two distinct HSP90 proteins (named HSP90A and HSP90B) from the chytridiomycete Blastocladiella emersonii. Deduced amino acid sequences of HSP90A and HSP90B exhibit signatures of the cytosolic and endoplasmic reticulum (ER) HSP90 proteins, respectively. A genomic clone encoding HSP90A was also characterized indicating the presence of a single intron of 184 bp interrupting the coding region, located near the amino-terminus of the protein. Expression of both HSP90A and HSP90B genes increases significantly during heat shock at 38 degrees C, with highest induction ratios observed in cells stressed during germination of the fungus. Changes in the amount of HSP90A transcript were also evaluated during B. emersonii life cycle at physiological temperature (27 degrees C), and its levels were found to increase both during germination and sporulation of the fungus. HSP90A protein levels were analyzed during B. emersonii life cycle and significant changes were observed only during sporulation. Furthermore, during heat stress a large increase in the amount of HSP90A protein was observed. Induction of HSP90A and HSP90B genes during heat stress indicates the importance of both genes in the response to high temperature in B. emersonii.


Subject(s)
Blastocladiella/genetics , Cytosol/metabolism , Endoplasmic Reticulum/metabolism , HSP90 Heat-Shock Proteins/genetics , Amino Acid Sequence , Blastocladiella/growth & development , Cloning, Molecular , DNA, Complementary , Gene Expression , Genes, Fungal , Hot Temperature , Molecular Sequence Data , Regulatory Elements, Transcriptional , Transcription Initiation Site
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