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1.
Oncogene ; 30(19): 2188-97, 2011 May 12.
Article in English | MEDLINE | ID: mdl-21242972

ABSTRACT

Initiation of centrosome duplication and DNA replication is coupled, which is primarily achieved by the late G1 phase-specific activation of cyclin-dependent kinase 2 (CDK2)-cyclin E, which triggers both centrosome duplication and DNA replication. Uncoupling of these two events contributes to overduplication of centrosomes, resulting in the presence of more than two centrosomes (centrosome amplification). Centrosome amplification, which is frequently observed in cancers, contributes to tumor development through destabilizing genomes. Nucleophosmin (NPM/B23) is one of the phosphorylation targets of CDK2-cyclin E for the initiation of centrosome duplication. It has been found that NPM/B23 phosphorylated on Thr199 by CDK2-cyclin E acquires a high binding affinity to ROCK II kinase. The Thr199-phosphorylated NPM/B23 physically interacts with and super-activates the centrosomally localized ROCK II, which is a critical event for centrosomes to initiate duplication. Here, we provide direct evidence for the activation of ROCK II as a primary and sufficient downstream event of CDK2-cyclin E for the initiation of centrosome duplication and for the induction of centrosome amplification.


Subject(s)
Centrosome , Cyclin-Dependent Kinase 2/metabolism , rho-Associated Kinases/metabolism , Animals , Base Sequence , Blotting, Western , Cells, Cultured , Cyclin-Dependent Kinase 2/genetics , DNA Primers , Fluorescent Antibody Technique, Indirect , Gene Silencing , Mice
2.
Oncogene ; 29(45): 6040-50, 2010 Nov 11.
Article in English | MEDLINE | ID: mdl-20697357

ABSTRACT

CDK2-cyclin E triggers centrosome duplication, and nucleophosmin (NPM/B23) is found to be one of its targets. NPM/B23 phosphorylated by CDK2-cyclin E acquires a high binding affinity to Rho-associated kinase (ROCK II), and physically associates with ROCK II. The NPM/B23-binding results in superactivation of ROCK II, which is a critical event for initiation of centrosome duplication. The activation of ROCK II also requires the binding of Rho small GTPase to the auto-inhibitory region; hence the availability of the active Rho protein is an important aspect of the centrosomally localized ROCK II to properly initiate centrosome duplication. There are three isoforms of Rho (RhoA, B and C), all of which are capable of binding to and priming the activation of ROCK II. Here, we investigated which Rho isoform(s) are involved in the activation of ROCK II in respect to the initiation of centrosome duplication. We found that both RhoA and RhoC, but not RhoB, were required for initiation of centrosome duplication, and overactivation of RhoA, as well as RhoC, but not RhoB, promoted centrosome duplication and centrosome amplification.


Subject(s)
Centrosome/physiology , ras Proteins/metabolism , rho GTP-Binding Proteins/metabolism , rho-Associated Kinases/metabolism , Animals , Mice , NIH 3T3 Cells , Up-Regulation , rhoA GTP-Binding Protein , rhoB GTP-Binding Protein/metabolism , rhoC GTP-Binding Protein
3.
J Pathol ; 216(3): 365-74, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18788085

ABSTRACT

Benzo[a]pyrene diol epoxide (B[a]PDE), the ultimate carcinogenic metabolite of benzo[a] pyrene, has been implicated in the mutagenesis of the p53 gene involved in smoking-associated lung cancer. To further understand the role of B[a]PDE in lung tumour progression, we investigated its effect on the numerical integrity of centrosomes and chromosome stability in lung cancer cells lacking p53. Exposure of p53-deficient H1299 lung cancer cells to B[a]PDE resulted in S-phase arrest, leading to abnormal centrosome amplification. Analysis of H1299 cells stably expressing fluorescence-tagged centrin (a known centriolar marker) revealed that the centrosome amplification was primarily attributable to excessive centrosome duplication rather than to centriole splitting. Forced expression of POLK DNA polymerase, which has the ability to bypass B[a]PDE-guanine lesions in an error-free manner, suppressed the B[a]PDE-induced centrosome amplification. Fluorescence in situ hybridization analyses with probes specific for chromosomes 2, 3, and 16 revealed that B[a]PDE exposure also led to chromosome instability, which was likely to have resulted from centrosome amplification. We extended these findings to primary lung carcinomas containing non-functional p53, and found a strong association between centrosome amplification and a high level of B[a]PDE-DNA accumulation. Therefore B[a]PDE contributes to neoplasia by inducing centrosome amplification and consequent chromosome destabilization as well as its mutagenic activity.


Subject(s)
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide/toxicity , Centrosome/ultrastructure , Chromosomal Instability , Lung Neoplasms/ultrastructure , Mutagens/toxicity , Tumor Suppressor Protein p53/deficiency , Aged , Cell Cycle/drug effects , Cell Transformation, Neoplastic , Chi-Square Distribution , DNA Adducts/analysis , DNA-Directed DNA Polymerase/metabolism , Female , Flow Cytometry , Fluorescent Antibody Technique, Indirect , Gene Expression Profiling , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Male , Middle Aged , Oligonucleotide Array Sequence Analysis
4.
Oncogene ; 27(40): 5288-302, 2008 Sep 11.
Article in English | MEDLINE | ID: mdl-18490919

ABSTRACT

Abnormal amplification of centrosomes, which occurs frequently in cancers, leads to high frequencies of mitotic defect and chromosome segregation error, profoundly affecting the rate of tumor progression. Centrosome amplification results primarily from overduplication of centrosomes, and p53 is involved in the regulation of centrosome duplication partly through controlling the activity of cyclin-dependent kinase (CDK) 2-cyclin E, a kinase complex critical for the initiation of centrosome duplication. Thus, loss or mutational inactivation of p53 leads to an increased frequency of centrosome amplification. Moreover, the status of cyclin E greatly influences the frequency of centrosome amplification in cells lacking functional p53. Here, we dissected the roles of CDK2-associating cyclins, namely cyclins E and A, in centrosome amplification in the p53-negative cells. We found that loss of cyclin E was readily compensated by cyclin A for triggering the initiation of centrosome duplication, and thus the centrosome duplication kinetics was not significantly altered in cyclin E-deficient cells. It has been shown that cells lacking functional p53, when arrested in either early S-phase or late G(2) phase, continue to reduplicate centrosomes, resulting in centrosome amplification. In cells arrested in early S phase, cyclin E, but not cyclin A, is important in centrosome amplification, whereas in the absence of cyclin E, cyclin A is important for centrosome amplification. In late G(2)-arrested cells, cyclin A is important in centrosome amplification irrespective of the cyclin E status. These findings advance our understandings of the mechanisms underlying the numeral abnormality of centrosomes and consequential genomic instability associated with loss of p53 function and aberrant expression of cyclins E and A in cancer cells.


Subject(s)
Centrosome/physiology , Cyclin A/physiology , Cyclin E/physiology , Embryo, Mammalian/metabolism , Fibroblasts/metabolism , Tumor Suppressor Protein p53/genetics , Animals , Antibiotics, Antineoplastic/pharmacology , Antiviral Agents/pharmacology , Aphidicolin/pharmacology , Doxorubicin/pharmacology , Embryo, Mammalian/cytology , Embryo, Mammalian/drug effects , Fibroblasts/cytology , Fibroblasts/drug effects , Flow Cytometry , Fluorescent Antibody Technique, Indirect , G2 Phase/drug effects , G2 Phase/physiology , Gene Expression Regulation, Neoplastic , Genes, Dominant , Humans , Immunoblotting , Mice , Mice, Knockout , S Phase/drug effects , S Phase/physiology , Transfection , Tumor Suppressor Protein p53/deficiency
5.
J Environ Manage ; 87(4): 600-8, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18082931

ABSTRACT

Waters derived from remote 'wilderness' locations have been assumed to be largely free of bacterial contamination and thus such, near-pristine, protected catchments, unused for agriculture, have been first in the multiple line of protection (pristine catchment-long storage-treatment-disinfection) employed by the water industry. This assumption is challenged by a bacterial survey of the waters derived from the New Cairngorm National Park, Scotland. Over 480 spot samples were taken for 59 sites between March 2001 and October 2002 during nine field campaigns each of three to five days duration. Over 75% of samples tested positive for Escherichia coli (E. coli) and 85% for total coliforms. Concentrations displayed both temporal and spatial patterns. Largest values occurred over the summer months and particularly at weekends at sites frequented by visitors, either for 'wild' camping or day visits, or where water was drawn from the river for drinking. Overall the spatial and temporal variations in bacterial concentrations suggest a relationship with visitor numbers and in particular wild camping. The implications of the results for drinking water quality and visitors health are discussed along with possible management options for the area in terms of improving the disposal of human waste.


Subject(s)
Rivers/microbiology , Water Microbiology , Water Pollution , Wilderness , Conservation of Natural Resources , Enterobacteriaceae/isolation & purification , Environmental Monitoring , Escherichia coli/isolation & purification , Feces/microbiology , Humans , Scotland
6.
Oncogene ; 26(20): 2939-44, 2007 May 03.
Article in English | MEDLINE | ID: mdl-17072342

ABSTRACT

Abnormal amplification of centrosomes is the major cause of mitotic defects and chromosome instability in cancer cells. Centrosomes duplicate once in each cell cycle, and abrogation of the regulatory mechanism underlying centrosome duplication leads to centrosome amplification. p53 tumor suppressor protein is involved in the regulation of centrosome duplication: loss of p53 as well as expression of certain p53 mutants result in deregulated centrosome duplication and centrosome amplification. p53 at least in part depends on its transactivation function to control centrosome duplication, primarily via upregulation of p21 cyclin-dependent kinase (CDK) inhibitor, which prevents untimely activation of CDK2/cyclin E, a key initiator of centrosome duplication. However, numerous studies have shown the presence of p53 at centrosomes, yet the role of the centrosomally localized p53 in the regulation of centrosome duplication had been enigmatic. Here, we comparatively examined wild-type p53 and p53 mutants that are transactivation(+)/centrosome-binding(-), transactivation(-)/centrosome-binding(+) and transactivation(-)/centrosome-binding(-) for their abilities to control centrosome duplication. We found that the transactivation(+)/centrosome-binding(-) and transactivation(-)/centrosome-binding(+) mutants suppress centrosome duplication only partially compared with wild-type p53. Moreover, the transactivation(-)/centrosome-binding(-) mutant almost completely lost the ability to suppress centrosome duplication. These observations provide direct evidence for the centrosomally localized p53 to participate in the regulation of centrosome duplication in a manner independent of its transactivation function in addition to its transactivation-dependent regulation of centrosome duplication.


Subject(s)
Cell Division/physiology , Centrosome/metabolism , Tumor Suppressor Protein p53/metabolism , Tumor Suppressor Protein p53/physiology , Animals , Cells, Cultured , Centrosome/physiology , Mice , Mutant Proteins/metabolism , Mutation, Missense , Protein Binding , Protein Structure, Tertiary/genetics , Protein Structure, Tertiary/physiology , Transcriptional Activation/genetics , Tumor Suppressor Protein p53/genetics
7.
Oncogene ; 25(39): 5377-90, 2006 Aug 31.
Article in English | MEDLINE | ID: mdl-16619038

ABSTRACT

Abnormal amplification of centrosomes, commonly found in human cancer, is the major cause of mitotic defects and chromosome instability in cancer cells. Like DNA, centrosomes duplicate once in each cell cycle, hence the defect in the mechanism that ensures centrosome duplication to occur once and only once in each cell cycle results in abnormal amplification of centrosomes and mitotic defects. Centrosomes are non-membranous organelles, and undergo dynamic changes in its constituents during the centrosome duplication cycle. Through a comparative mass spectrometric analysis of unduplicated and duplicated centrosomes, we identified mortalin, a member of heat shock protein family, as a protein that associates preferentially with duplicated centrosomes. Further analysis revealed that mortalin localized to centrosomes in late G1 before centrosome duplication, remained at centrosomes during S and G2, and dissociated from centrosomes during mitosis. Overexpression of mortalin overrides the p53-dependent suppression of centrosome duplication, and mortalin-driven centrosome duplication requires physical interaction between mortalin and p53. Moreover, mortalin promotes dissociation of p53 from centrosomes through physical interaction. The p53 mutant that lacks the ability to bind to mortalin remains at centrosomes, and suppresses centrosome duplication in a transactivation function-independent manner. Thus, our present findings not only identify mortalin as an upstream molecule of p53 but also provide evidence for the involvement of centrosomally localized p53 in the regulation of centrosome duplication.


Subject(s)
Centrosome/ultrastructure , Genes, p53 , HSP70 Heat-Shock Proteins/physiology , Cell Cycle , Clone Cells , G1 Phase , G2 Phase , HeLa Cells , Humans , Mitosis , S Phase , Transcription, Genetic
8.
J Med Chem ; 44(26): 4615-27, 2001 Dec 20.
Article in English | MEDLINE | ID: mdl-11741479

ABSTRACT

As a first step in structure-based design of highly selective and potent Cdk4 inhibitors, we performed structure-based generation of a novel series of Cdk4 inhibitors. A Cdk4 homology model was constructed according to X-ray analysis of an activated form of Cdk2. Using this model, we applied a new de novo design strategy which combined the de novo design program LEGEND with our in-house structure selection supporting system SEEDS to generate new scaffold candidates. In this way, four classes of scaffold candidates including diarylurea were identified. By constructing diarylurea informer libraries based on the structural requirements of Cdk inhibitors in the ATP binding pocket of the Cdk4 model, we were able to identify a potent Cdk4 inhibitor N-(9-oxo-9H-fluoren-4-yl)-N'-pyridin-2-ylurea 15 (IC(50) = 0.10 microM), together with preliminary SAR. We performed a docking study between 15 and the Cdk4 model and selected a reasonable binding mode which is consistent with the SAR. Further modification based on the proposed binding mode provided a more potent compound, N-[(9bR)-5-oxo-2,3,5,9b-tetrahydro-1H-pyrrolo[2,1-a]isoindol-9-yl]-N'-pyridin-2-ylurea 26a (IC(50) = 0.042 microM), X-ray analysis of which was accomplished by the soaking method. The predicted binding mode of 15 in Cdk4 was validated by X-ray analysis of the Cdk2-26a complex.


Subject(s)
CDC2-CDC28 Kinases , Cyclin-Dependent Kinases/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Fluorenes/chemistry , Proto-Oncogene Proteins , Pyridines/chemistry , Urea/analogs & derivatives , Urea/chemistry , Combinatorial Chemistry Techniques , Crystallography, X-Ray , Cyclin-Dependent Kinase 2 , Cyclin-Dependent Kinase 4 , Cyclin-Dependent Kinases/chemistry , Drug Design , Enzyme Inhibitors/chemical synthesis , Fluorenes/chemical synthesis , Isoindoles , Magnetic Resonance Spectroscopy , Models, Molecular , Protein Binding , Protein Serine-Threonine Kinases/chemistry , Pyridines/chemical synthesis , Structure-Activity Relationship , Urea/chemical synthesis
9.
J Med Chem ; 44(26): 4628-40, 2001 Dec 20.
Article in English | MEDLINE | ID: mdl-11741480

ABSTRACT

Identification of a selective inhibitor for a particular protein kinase without inhibition of other kinases is critical for use as a biological tool or drug. However, this is very difficult because there are hundreds of homologous kinases and their kinase domains including the ATP binding pocket have a common folding pattern. To address this issue, we applied the following structure-based approach for designing selective Cdk4 inhibitors: (1) identification of specifically altered amino acid residues around the ATP binding pocket in Cdk4 by comparison of 390 representative kinases, (2) prediction of appropriate positions to introduce substituents in lead compounds based on the locations of the altered amino acid residues and the binding modes of lead compounds, and (3) library design to interact with the altered amino acid residues supported by de novo design programs. Accordingly, Asp99, Thr102, and Gln98 of Cdk4, which are located in the p16 binding region, were selected as first target residues for specific interactions with Cdk4. Subsequently, the 5-position of the pyrazole ring in the pyrazol-3-ylurea class of lead compound (2a) was predicted to be a suitable position to introduce substituents. We then designed a chemical library of pyrazol-3-ylurea substituted with alkylaminomethyl groups based on the output structures of de novo design programs. Thus we identified a highly selective and potent Cdk4 inhibitor, 15b, substituted with a 5-chloroindan-2-ylaminomethyl group. Compound 15b showed higher selectivity on Cdk4 over those on not only Cdk1/2 (780-fold/190-fold) but also many other kinases (>430-fold) that have been tested thus far. The structural basis for Cdk4 selective inhibition by 15b was analyzed by combining molecular modeling and the X-ray analysis of the Cdk4 mimic Cdk2-inhibitor complex. The results suggest that the hydrogen bond with the carboxyl group of Asp99 and hydrophobic van der Waals contact with the side chains of Thr102 and Gln98 are important. Compound 15b was found to cause cell cycle arrest of the Rb(+) cancer cell line in the G(1) phase, indicating that it is a good biological tool.


Subject(s)
Cyclin-Dependent Kinases/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Proto-Oncogene Proteins , Pyrazoles/chemistry , Urea/analogs & derivatives , Urea/chemistry , Adenosine Triphosphate/chemistry , Amino Acid Sequence , Combinatorial Chemistry Techniques , Crystallography, X-Ray , Cyclin-Dependent Kinase 4 , Cyclin-Dependent Kinases/chemistry , Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , G1 Phase/drug effects , Isoindoles , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Protein Binding , Pyrazoles/chemical synthesis , Pyrazoles/pharmacology , Structure-Activity Relationship , Tumor Cells, Cultured , Urea/chemical synthesis , Urea/pharmacology
10.
Oncogene ; 20(47): 6851-63, 2001 Oct 18.
Article in English | MEDLINE | ID: mdl-11687964

ABSTRACT

The p53 tumor suppressor protein regulates centrosome duplication through multiple pathways, and p21(Waf1/Cip1) (Waf1), a major target of p53's transactivation function, has been shown to be one of the effectors. However, it had been unclear whether the p53's Waf1-independent centrosome duplication regulatory pathways require its transactivation function. In human cancers, specific residues of p53 are mutated at a high frequency. These 'hot spot' mutations abrogate p53's transactivation function. If p53 regulates centrosome duplication in a transactivation-independent manner, different 'hot spot' mutants may regulate centrosome duplication differently. To test this, we examined the effect of two 'hot spot' mutants (R175H and R249S) for their centrosome duplication regulatory activities. We found that R175H lost the ability to regulate centrosome duplication, while R249S partially retained it. Moreover, R249S associates with both unduplicated and duplicated centrosomes similar to wild-type p53, while R175H only associates with duplicated, but not unduplicated centrosomes. Since cyclin-dependent kinase 2 (CDK2) triggers initiation of centrosome duplication, and p53 is phosphorylated on Ser 315 by CDK2, we examined the p53 mutants with a replacement of Ser 315 to Ala (A) and Asp (D), both of which retain the transactivation function. We found that S315D retained a complete centrosome duplication activity, while S315A only partially retained it. Moreover, S315D associates with both unduplicated and duplicated centrosomes, while S315A associates with only duplicated, but not unduplicated centrosomes. Thus, p53 controls the centrosome duplication cycle both in transactivation-dependent and transactivation-independent manners, and the ability to bind to unduplicated centrosomes, which is controlled by phosphorylation on Ser 315, may be important for the overall p53-mediated regulation of centrosome duplication.


Subject(s)
Centrosome/metabolism , Phosphoserine/metabolism , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Protein p53/metabolism , Aneuploidy , Animals , Cell Line , Centrosome/ultrastructure , Cyclin-Dependent Kinases/physiology , Gene Deletion , Mice , Mutation , Neoplasms/genetics , Phosphorylation , Spindle Apparatus/ultrastructure , Trans-Activators/genetics , Trans-Activators/metabolism , Trans-Activators/physiology , Transfection , Tumor Suppressor Protein p53/physiology
11.
Biochemistry ; 40(39): 11860-5, 2001 Oct 02.
Article in English | MEDLINE | ID: mdl-11570886

ABSTRACT

Dipeptidyl peptidase III (DPP III) (EC 3.4.14.4), which has a HELLGH-E (residues 450-455, 508) motif as the zinc binding site, is classified as a zinc metallopeptidase. The zinc dissociation constants of the wild type, Leu(453)-deleted, and E508D mutant of DPP III at pH 7.4 were 4.5 (+/-0.7) x 10(-13), 5.8 (+/-0.7) x 10(-12), and 3.2 (+/-0.9) x 10(-10) M, respectively. The recoveries of the enzyme activities by the addition of various metal ions to apo-DPP III were also measured, and Co(2+), Ni(2+), and Cu(2+) ions completely recovered the enzyme activities as did Zn(2+). The dissociation constants of Co(2+), Ni(2+), and Cu(2+) ions for apo-DPP III at pH 7.4 were 8.2 (+/-0.9) x 10(-13), 2.7 (+/-0.3) x 10(-12), and 1.1 (+/-0.1) x 10(-14) M, respectively. The shape of the absorption spectrum of Co(2+)-DPP III was very similar to that of Co(2+)-carboxypeptidase A or Co(2+)-thermolysin, in which the Co(2+) is bound to two histidyl nitrogens, a water molecule, and a glutamate residue. The absorption spectrum of Cu(2+)-DPP III is also very similar to that of Cu(2+)-thermolysin. The EPR spectrum and the EPR parameters of Cu(2+)-DPP III were very similar to those of Cu(2+)-thermolysin but slightly different from those of Cu(2+)-carboxypeptidase A. The five lines of the superfine structure in the perpendicular region of the EPR spectrum in Cu(2+)-DPP III suggest that nitrogen atoms should coordinate to the cupric ion in Cu(2+)-DPP III. All of these data suggest that the donor set and the coordination geometry of the metal ions in DPP III, which has the HExxxH motif as the metal binding site, are very similar to those of the metal ions in thermolysin, which has the HExxH motif.


Subject(s)
Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , Liver/enzymology , Zinc/metabolism , Animals , Electron Spin Resonance Spectroscopy , Kinetics , Rats , Recombinant Proteins/metabolism
12.
Eur J Biochem ; 268(18): 4940-9, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11559363

ABSTRACT

Two proctolin-binding proteins solubilized from 1600 cockroach hindgut membranes were purified 1000-fold using five chromatography steps. Twenty-five micrograms of protein were recovered from the final size-exclusion chromatography as a single peak eluting at 74 kDa, whereas two major bands at 80 and 76 kDa were identified after silver staining of electrophoresis gels. The fragments, sequenced by tandem mass spectrometry and the Edman method, revealed a high homology with rat liver dipeptidyl aminopeptidase (DPP) III and a significant homology between the cockroach-purified proteins. From analysis of the Drosophila genome sequence database, it was possible to identify a putative DPP sharing high homology with the sequences obtained from the cockroach purified proteins and with the rat DPP III. Anti-(rat liver DPP III) Ig reacted specifically with both cockroach-purified proteins in Western blot analysis. The purified proteins removed the N-terminal dipeptide from the insect myotropic neuropeptide proctolin (Arg-Tyr-Leu-Pro-Thr) with a Km value of 3.8 +/- 1.1 microM. The specific DPP III inhibitor tynorphin prevented the degradation of proctolin by the purified insect DPP (IC50 = 0.68 microM). These results provide strong evidence that the cockroach-purified proteins represent an insect membrane DPP, presumably present in Drosophila, and that it is closely related to vertebrate DPP III.


Subject(s)
Cockroaches/enzymology , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/isolation & purification , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , Neuropeptides , Oligopeptides/metabolism , Amino Acid Sequence , Animals , Blotting, Western , Cockroaches/cytology , Cockroaches/genetics , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/chemistry , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/genetics , Drosophila melanogaster/enzymology , Drosophila melanogaster/genetics , Expressed Sequence Tags , Membrane Proteins/chemistry , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Membrane Proteins/metabolism , Molecular Sequence Data , Protein Binding , Rats , Sequence Analysis, Protein
13.
Rinsho Byori ; 49(7): 711-5, 2001 Jul.
Article in Japanese | MEDLINE | ID: mdl-11519137

ABSTRACT

Highly conserved sequence in the 5' untranslated region(UTR) of hepatitis C virus(HCV) genome have been targeted by most nucleic acid amplification-based detection assays, such as Amplicor HCV test, a commercially available assay kit. In this study, we classified HCV genotypes by direct sequencing determination for 5' UTR of nested-PCR after Amplicor HCV test. Then, based on the results of sequence, RFLP analysis after digestion of the nested PCR fragments with Hae III or Sau 3AI to classify HCV genotype was evaluated. RFLP analysis distinguished the type 1, 2a and 2b. Only one of 29 samples was not classified by RFLP analysis due to the point mutation of Hae III recognition site. HCV genotypes commonly found in JAPAN were classified into three types, 1b, 2a, and 2b. Also, RFLP analysis requires fewer resources than serotype grouping test. Hence, the present method provides an adaptable and rapid HCV genotyping in clinical laboratory in JAPAN.


Subject(s)
Genotype , Hepacivirus/genetics , Polymorphism, Restriction Fragment Length , Base Sequence , Hepacivirus/isolation & purification , Humans , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Alignment
14.
Oncogene ; 20(25): 3173-84, 2001 May 31.
Article in English | MEDLINE | ID: mdl-11423967

ABSTRACT

The function of the centrosomes to direct mitotic spindles is critical for accurate chromosome transmission to daughter cells. Since each daughter cell inherits one centrosome, each centrosome must duplicate prior to the next mitosis, and do so only once. Thus, there are control mechanism(s) that ensure the coordinated progression of centrosome duplication and other cell cycle events (i.e. DNA synthesis), and limit centrosome duplication to once per cell cycle. Deregulation of the centrosome duplication cycle results in abnormal amplification of centrosomes, leading to aberrant mitoses and increased chromosome transmission errors. This has been found to be the case for cells lacking functional p53 tumor suppressor protein. However, it had remained to be determined whether the deregulation of the centrosome duplication cycle is the direct or indirect effect of loss/mutational inactivation of p53. Here, we found that the normal centrosome duplication cycle is almost completely restored in p53(-/-) cells by re-introduction of wild-type p53 at a physiologically relevant level, demonstrating that p53 is directly involved in the regulation of centrosome duplication. Since cyclin dependent kinase 2 (CDK2)/cyclin E triggers DNA synthesis as well as centrosome duplication, we tested whether Waf1, a CDK inhibitor and a major target of p53's transactivation function, is an effector of p53-mediated regulation of centrosome duplication. We found that induced expression of Waf1 in p53(-/-) cells only partially restored the centrosome duplication control, suggesting that Waf1 comprises one of the multiple effector pathways of the p53-mediated regulation of the centrosome duplication cycle.


Subject(s)
CDC2-CDC28 Kinases , Centrosome/physiology , Cyclins/metabolism , Tumor Suppressor Protein p53/metabolism , Animals , Aphidicolin/pharmacology , Cell Cycle , Cell Line , Cyclin E/metabolism , Cyclin-Dependent Kinase 2 , Cyclin-Dependent Kinase Inhibitor p21 , Cyclin-Dependent Kinases/metabolism , Cyclins/genetics , Enzyme Inhibitors , Fibroblasts/cytology , Mice , Mice, Mutant Strains , Protein Serine-Threonine Kinases/metabolism
15.
J Biol Chem ; 276(29): 27548-54, 2001 Jul 20.
Article in English | MEDLINE | ID: mdl-11335721

ABSTRACT

Genetic alteration of one or more components of the p16(INK4A)-CDK4,6/cyclin D-retinoblastoma pathway is found in more than half of all human cancers. Therefore, CDK4 is an attractive target for the development of a novel anticancer agent. However, it is difficult to make CDK4-specific inhibitors that do not possess activity for other kinases, especially CDK2, because the CDK family has high structural homology. The three-dimensional structure of CDK2, particularly that bound with the inhibitor, has provided useful information for the synthesis of CDK2-specific inhibitors. The same approach used to make CDK4-specific inhibitors was hindered by the failure to obtain a crystal structure of CDK4. To overcome this problem, we synthesized a CDK4 mimic CDK2 protein in which the ATP binding pocket of CDK2 was replaced with that of CDK4. This CDK4 mimic CDK2 was crystallized both in the free and inhibitor-bound form. The structural information thus obtained was found to be useful for synthesis of a CDK4-specific inhibitor that does not have substantial CDK2 activity. Namely, the data suggest that CDK4 has additional space that will accommodate a large substituent such as the CDK4 selective inhibitor. Inhibitors designed to bind into this large cavity should be selective for CDK4 without having substantial CDK2 activity. This design principle was confirmed in the x-ray crystal structure of the CDK4 mimic CDK2 with a new CDK4 selective inhibitor bound.


Subject(s)
Cyclin-Dependent Kinases/antagonists & inhibitors , Enzyme Inhibitors/chemistry , Proto-Oncogene Proteins , Crystallography, X-Ray , Cyclin-Dependent Kinase 4 , Enzyme Inhibitors/pharmacology , Hydrogen Bonding , Models, Molecular , Molecular Conformation
16.
J Biol Chem ; 276(24): 21529-37, 2001 Jun 15.
Article in English | MEDLINE | ID: mdl-11278991

ABSTRACT

The kinase activity of cyclin-dependent kinase 2 (CDK2)-cyclin E is required for centrosomes to initiate duplication. We have recently found that nucleophosmin (NPM/B23), a phosphoprotein primarily found in nucleolus, associates with unduplicated centrosomes and is a direct substrate of CDK2-cyclin E in centrosome duplication. Upon phosphorylation by CDK2-cyclin E, NPM/B23 dissociates from centrosomes, which is a prerequisite step for centrosomes to initiate duplication. Here, we identified that threonine 199 (Thr(199)) of NPM/B23 is the major phosphorylation target site of CDK2-cyclin E in vitro, and the same site is phosphorylated in vivo. NPM/T199A, a nonphosphorylatable NPM/B23 substitution mutant (Thr(199) --> Ala) acts as dominant negative when expressed in cells, resulting in specific inhibition of centrosome duplication. As expected, NPM/T199A remains associated with the centrosomes. These observations provide direct evidence that the CDK2-cyclin E-mediated phosphorylation on Thr(199) determines association and dissociation of NPM/B23 to the centrosomes, which is a critical control for the centrosome to initiate duplication.


Subject(s)
CDC2-CDC28 Kinases , Centrosome/physiology , Cyclin E/metabolism , Cyclin-Dependent Kinases/metabolism , Nuclear Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , 3T3 Cells , Animals , Cell Nucleus/metabolism , Cyclin E/genetics , Cyclin-Dependent Kinase 2 , Cyclin-Dependent Kinases/genetics , HeLa Cells , Humans , Kinetics , Mice , Nuclear Proteins/chemistry , Nuclear Proteins/genetics , Nucleophosmin , Phosphorylation , Protein Serine-Threonine Kinases/genetics , Recombinant Proteins/metabolism , Substrate Specificity , Threonine , Transfection
17.
Biochem J ; 353(Pt 2): 283-90, 2001 Jan 15.
Article in English | MEDLINE | ID: mdl-11139392

ABSTRACT

Dipeptidyl peptidase II (DPP II; EC 3.4.14.2) from rat kidney was purified to a specific activity of 65.4 micromol/min per mg of protein for Lys-Ala-beta-naphthylamide. The N-terminal and partial amino acid sequences of the enzyme were determined. The peptide sequences were used to identify expressed sequence tag (EST) clones. By using the cDNA fragment of one of the EST clones as a probe, we isolated a cDNA clone with 1710 bp encoding DPP II from a rat kidney cDNA library. The cDNA of rat DPP II contained an open reading frame of 1500 bp, coding for a protein of 500 amino acids. The first 10 residues of the purified enzyme matched the deduced protein sequence starting with residue 37, suggesting the presence of a signal peptide. The mature enzyme (464 residues) had a calculated molecular mass of 51400 Da, which was lower than the value (about 60000 Da) determined by SDS/PAGE; and the deduced amino acid sequence showed six potential N-glycosylation sites. The deduced amino acid sequence of rat DPP II shared high similarity with quiescent-cell proline dipeptidase (78% identity) and prolyl carboxypeptidase (38% identity) and bore the putative catalytic triad (Ser, Asp, His) conserved in serine peptidase families. We transiently transfected COS-7 cells with pcDNA3.1 containing the cloned cDNA and obtained the overexpression of an immunoreactive protein (of about 60000 Da). The transfected cells showed Lys-Ala-methylcoumarinamide-hydrolysing activity that was 50 times higher than the control cells.


Subject(s)
Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/genetics , Kidney/enzymology , Amino Acid Sequence , Animals , Base Sequence , COS Cells , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/isolation & purification , DNA, Complementary/metabolism , Dipeptidases/metabolism , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/isolation & purification , Dipeptidyl-Peptidases and Tripeptidyl-Peptidases/metabolism , Female , Hydrogen-Ion Concentration , Kinetics , Molecular Sequence Data , RNA, Messenger/chemistry , RNA, Messenger/isolation & purification , RNA, Messenger/metabolism , Rats , Rats, Wistar , Sequence Alignment , Transfection
19.
Laryngoscope ; 110(11): 1798-801, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11081587

ABSTRACT

OBJECTIVES/HYPOTHESIS: There is currently no single histological or genotypic marker that reliably predicts the biological behavior of head and neck squamous cell carcinoma (HNSCC). While multiple genetic mutations have been investigated, no single genotypic alteration has consistently correlated with tumor aggressiveness. Phenotypic markers may prove more predictive, because they can represent many different genetic alterations. We investigated the frequency of centrosome hyperamplification in HNSCC and examined its usefulness as a marker for tumor recurrence. STUDY DESIGN: Analysis of archived paraffin blocks using immunohistochemistry. METHODS: Eighteen patients who underwent resection of oral cavity squamous cell carcinoma were reviewed. Ten patients had cancers that recurred locally within 1 year of resection, and 8 patients were tumor free at 5 years. The amount of centrosome hyperamplification in the cancer specimens and all surgical margins was graded as follows: 0, none; 1+, rare hyperamplification; 2+, greater than 10% of cells per high-powered field; and 3 +, greater than 20% of cells per high-powered field. RESULTS: Centrosome hyperamplification was found in 17 of 18 tumors (94%). Grade 2+ or 3+ hyperamplification was found more in cancers that recurred (9 of 10) than in those that did not (3 of 8) and was more prevalent in the histologically normal margins of patients with recurrence (8 of 10) than in those without recurrent cancer (3 of 8). CONCLUSIONS: Our results demonstrate the extremely frequent occurrence of centrosome hyperamplification in HNSCC. Centrosome hyperamplification is a phenotypic marker for HNSCC and can reflect multiple genotypic changes. Its presence in histologically normal margins suggests that it may be useful for analysis of primary tumors and tumor margins.


Subject(s)
Carcinoma, Squamous Cell/ultrastructure , Centrosome/pathology , Mouth Neoplasms/ultrastructure , Adult , Aged , Aged, 80 and over , Carcinoma, Squamous Cell/mortality , Female , Humans , Immunohistochemistry , Male , Middle Aged , Mouth Neoplasms/mortality , Neoplasm Staging , Phenotype , Prognosis
20.
Cell ; 103(1): 127-40, 2000 Sep 29.
Article in English | MEDLINE | ID: mdl-11051553

ABSTRACT

In animal cells, duplication of centrosomes and DNA is coordinated. Since CDK2/cyclin E triggers initiation of both events, activation of CDK2/cyclin E is thought to link these two events. We identified nucleophosmin (NPM/B23) as a substrate of CDK2/cyclin E in centrosome duplication. NPM/B23 associates specifically with unduplicated centrosomes, and NPM/B23 dissociates from centrosomes by CDK2/cyclin E-mediated phosphorylation. An anti-NPM/B23 antibody, which blocks this phosphorylation, suppresses the initiation of centrosome duplication in vivo. Moreover, expression of a nonphosphorylatable mutant NPM/ B23 in cells effectively blocks centrosome duplication. Thus, NPM/B23 is a target of CDK2/cyclin E in the initiation of centrosome duplication.


Subject(s)
CDC2-CDC28 Kinases , Centrosome/metabolism , Cyclin E/genetics , Cyclin-Dependent Kinases/genetics , Nuclear Proteins/genetics , Protein Serine-Threonine Kinases/genetics , 3T3 Cells , Animals , Antibodies/pharmacology , Cyclin E/metabolism , Cyclin-Dependent Kinase 2 , Cyclin-Dependent Kinases/metabolism , Gene Deletion , Gene Expression Regulation/physiology , Mice , Microinjections , Mutation/genetics , Nuclear Proteins/deficiency , Nuclear Proteins/isolation & purification , Nucleophosmin , Phosphorylation , Protein Serine-Threonine Kinases/metabolism
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