Potential of acetic acid to restore methane production in anaerobic reactors critically intoxicated by ammonia as evidenced by metabolic and microbial monitoring.

BACKGROUND: Biogas and biomethane production from the on-farm anaerobic digestion (AD) of animal manure and agri-food wastes could play a key role in transforming Europe's energy system by mitigating its dependence on fossil fuels and tackling the climate crisis. Although ammonia is essential for microbial growth, it inhibits the AD process if present in high concentrations, especially under its free form, thus leading to economic losses. In this study, which includes both metabolic and microbial monitoring, we tested a strategy to restore substrate conversion to methane in AD reactors facing critical free ammonia intoxication. RESULTS: The AD process of three mesophilic semi-continuous 100L reactors critically intoxicated by free ammonia (> 3.5 g_N L-1; inhibited hydrolysis and heterotrophic acetogenesis; interrupted methanogenesis) was restored by applying a strategy that included reducing pH using acetic acid, washing out total ammonia with water, re-inoculation with active microbial flora and progressively re-introducing sugar beet pulp as a feed substrate. After 5 weeks, two reactors restarted to hydrolyse the pulp and produced CH4 from the methylotrophic methanogenesis pathway. The acetoclastic pathway remained inhibited due to the transient dominance of a strictly methylotrophic methanogen (Candidatus Methanoplasma genus) to the detriment of Methanosarcina. Concomitantly, the third reactor, in which Methanosarcina remained dominant, produced CH4 from the acetoclastic pathway but faced hydrolysis inhibition. After 11 weeks, the hydrolysis, the acetoclastic pathway and possibly the hydrogenotrophic pathway were functional in all reactors. The methylotrophic pathway was no longer favoured. Although syntrophic propionate oxidation remained suboptimal, the final pulp to CH4 conversion ratio (0.41 ± 0.10 LN_CH4 g_VS-1) was analogous to the pulp biochemical methane potential (0.38 ± 0.03 LN_CH4 g_VS-1). CONCLUSIONS: Despite an extreme free ammonia intoxication, the proposed process recovery strategy allowed CH4 production to be restored in three intoxicated reactors within 8 weeks, a period during which re-inoculation appeared to be crucial to sustain the process. Introducing acetic acid allowed substantial CH4 production during the recovery period. Furthermore, the initial pH reduction promoted ammonium capture in the slurry, which could allow the field application of the effluents produced by full-scale digesters recovering from ammonia intoxication.

A specific H2/CO2 consumption molar ratio of 3 as a signature for the chain elongation of carboxylates from brewer's spent grain acidogenesis.

Brewer's spent grain (BSG) is an undervalorized organic feedstock residue composed of fermentable macromolecules, such as proteins, starch, and residual soluble carbohydrates. It also contains at least 50% (as dry weight) of lignocellulose. Methane-arrested anaerobic digestion is one of the promising microbial technologies to valorize such complex organic feedstock into value-added metabolic intermediates, such as ethanol, H2, and short-chain carboxylates (SCC). Under specific fermentation conditions, these intermediates can be microbially transformed into medium-chain carboxylates through a chain elongation pathway. Medium-chain carboxylates are of great interest as they can be used as bio-based pesticides, food additives, or components of drug formulations. They can also be easily upgraded by classical organic chemistry into bio-based fuels and chemicals. This study investigates the production potential of medium-chain carboxylates driven by a mixed microbial culture in the presence of BSG as an organic substrate. Because the conversion of complex organic feedstock to medium-chain carboxylates is limited by the electron donor content, we assessed the supplementation of H2 in the headspace to improve the chain elongation yield and increase the production of medium-chain carboxylates. The supply of CO2 as a carbon source was tested as well. The additions of H2 alone, CO2 alone, and both H2 and CO2 were compared. The exogenous supply of H2 alone allowed CO2 produced during acidogenesis to be consumed and nearly doubled the medium-chain carboxylate production yield. The exogenous supply of CO2 alone inhibited the whole fermentation. The supplementation of both H2 and CO2 allowed a second elongation phase when the organic feedstock was exhausted, which increased the medium-chain carboxylate production by 285% compared to the N2 reference condition. Carbon- and electron-equivalent balances, and the stoichiometric ratio of 3 observed for the consumed H2/CO2, suggest an H2- and CO2-driven second elongation phase, converting SCC to medium-chain carboxylates without an organic electron donor. The thermodynamic assessment confirmed the feasibility of such elongation.

Toward a Hydrogen-Free Reductive Catalytic Fractionation of Wheat Straw Biomass.

The reductive catalytic fractionation (RCF) of lignocellulosic biomass is an attractive method for the conversion of lignin toward valuable low-molecular weight aromatics. A limitation to the upscaling of such technology is represented by the use ofpressurized hydrogen gas. Here, the role of hydrogen gas within the RCF of wheat straw biomass is investigated. The use of H2 is shown to enhance lignin depolymerization, by virtue of an improved hydrogenolysis and hydrogenation of lignin fragments, with a yield of phenolic monomers that increased from ca. 12 wt % of acid-insoluble lignin in the initial biomass under inert atmosphere to up to ca. 25 wt % under H2 (in methanol, at 250 °C, with Ru/C). The adoption of methanol, ethanol or isopropanol as hydrogen-donor solvents was also investigated in the absence of H2 . Ethanol was found to give the highest yield of monophenolic compounds (up to ≈20 wt %) owing to a better balance between solvolysis, hydrogenolysis, and hydrogenation of lignin. Nevertheless, a substantial loss of the carbohydrate fraction was observed. The use of a lower temperature (200 °C) in combination with H3 PO4 resulted in an improved recovery of cellulose in the pulp and in the solubilization of hemicellulose and lignin, with the formation of monosaccharides (≈14 wt % of polysaccharides in the initial biomass) and phenolic monomers (up to 18 wt %, in the absence of H2 ). Overall, a tradeoff exists between the removal of H2 from the process and the production of low-molecular weight phenolics during RCF.

Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes.

Miscanthus sp. biomass could satisfy future biorefinery value chains. However, its use is largely untapped due to high recalcitrance. The termite and its gut microbiome are considered the most efficient lignocellulose degrading system in nature. Here, we investigate at holobiont level the dynamic adaptation of Cortaritermes sp. to imposed Miscanthus diet, with a long-term objective of overcoming lignocellulose recalcitrance. We use an integrative omics approach combined with enzymatic characterisation of carbohydrate active enzymes from termite gut Fibrobacteres and Spirochaetae. Modified gene expression profiles of gut bacteria suggest a shift towards utilisation of cellulose and arabinoxylan, two main components of Miscanthus lignocellulose. Low identity of reconstructed microbial genomes to closely related species supports the hypothesis of a strong phylogenetic relationship between host and its gut microbiome. This study provides a framework for better understanding the complex lignocellulose degradation by the higher termite gut system and paves a road towards its future bioprospecting.

Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics.

Increased hydrolysis of easily digestible biomass may lead to acidosis of anaerobic reactors and decreased methane production. Previously, it was shown that the structure of microbial communities changed during acidosis; however, once the conditions are back to optimal, biogas (initially CO2) production quickly restarts. This suggests the retention of the community functional redundancy during the process failure. In this study, with the use of metagenomics and downstream bioinformatics analyses, we characterize the carbohydrate hydrolytic potential of the microbial community, with a special focus on acidosis. To that purpose, carbohydrate-active enzymes were identified, and to further link the community hydrolytic potential with key microbes, bacterial genomes were reconstructed. In addition, we characterized biochemically the specificity and activity of selected enzymes, thus verifying the accuracy of the in silico predictions. The results confirm the retention of the community hydrolytic potential during acidosis and indicate Bacteroidetes to be largely involved in biomass degradation. Bacteroidetes showed higher diversity and genomic content of carbohydrate hydrolytic enzymes that might favor the dominance of this phylum over other bacteria in some anaerobic reactors. The combination of bioinformatic analyses and activity tests enabled us to propose a model of acetylated glucomannan degradation by BacteroidetesIMPORTANCE The enzymatic hydrolysis of lignocellulosic biomass is mainly driven by the action of carbohydrate-active enzymes. By characterizing the gene profiles at the different stages of the anaerobic digestion experiment, we showed that the microbiome retains its hydrolytic functional redundancy even during severe acidosis, despite significant changes in taxonomic composition. By analyzing reconstructed bacterial genomes, we demonstrate that Bacteroidetes hydrolytic gene diversity likely favors the abundance of this phylum in some anaerobic digestion systems. Further, we observe genetic redundancy within the Bacteroidetes group, which accounts for the preserved hydrolytic potential during acidosis. This work also uncovers new polysaccharide utilization loci involved in the deconstruction of various biomasses and proposes the model of acetylated glucomannan degradation by Bacteroidetes Acetylated glucomannan-enriched biomass is a common substrate for many industries, including pulp and paper production. Using naturally evolved cocktails of enzymes for biomass pretreatment could be an interesting alternative to the commonly used chemical pretreatments.

Comparison of the acidogenic and methanogenic potential of agroindustrial residues.

The methanogenic and acidogenic potentials of six different agroindustrial residues, i.e. of fruit pulps and brewery residues, were determined. For all substrates, the methanogenic conversion yield was systematically higher than the acidogenic one in Chemical Oxygen Demand (COD) terms, ranging from 0.46 to 0.87 gCOD_CH4/gCOD_substrate_fed and from 0.24 to 0.56 gCOD_tVFA/gCOD_substrate_fed, respectively. During methanogenic conversion, brewery trub exhibited the highest methane potential (304mlCH4/gCOD_substrate). Trub also exhibited the highest total volatile fatty acids (tVFA) concentrations in the mixed liquor (ML) during acidogenic conversion (29.7 gCOD_tVFA/kgML). Acetic, butyric and caproic acids were the main carboxylates produced by the different substrates. Despite the lower conversion yields, the economic value of the acidogenic product (carboxylate streams) is higher than that of methanogenic conversion (methane) due to the higher value of carboxylates and their potential use in finer applications (e.g. bio-based products) compared to energy production form methane.

Anaerobic biodegradability of fish remains: experimental investigation and parameter estimation.

The generation of organic waste associated with aquaculture fish processing has increased significantly in recent decades. The objective of this study is to evaluate the anaerobic biodegradability of several fish processing fractions, as well as water treatment sludge, for tilapia and sturgeon species cultured in recirculated aquaculture systems. After substrate characterization, the ultimate biodegradability and the hydrolytic rate were estimated by fitting a first-order kinetic model with the biogas production profiles. In general, the first-order model was able to reproduce the biogas profiles properly with a high correlation coefficient. In the case of tilapia, the skin/fin, viscera, head and flesh presented a high level of biodegradability, above 310 mLCH4gCOD⁻¹, whereas the head and bones showed a low hydrolytic rate. For sturgeon, the results for all fractions were quite similar in terms of both parameters, although viscera presented the lowest values. Both the substrate characterization and the kinetic analysis of the anaerobic degradation may be used as design criteria for implementing anaerobic digestion in a recirculating aquaculture system.

Biochemical methane potential prediction of plant biomasses: Comparing chemical composition versus near infrared methods and linear versus non-linear models.

The reliability of different models to predict the biochemical methane potential (BMP) of various plant biomasses using a multispecies dataset was compared. The most reliable prediction models of the BMP were those based on the near infrared (NIR) spectrum compared to those based on the chemical composition. The NIR predictions of local (specific regression and non-linear) models were able to estimate quantitatively, rapidly, cheaply and easily the BMP. Such a model could be further used for biomethanation plant management and optimization. The predictions of non-linear models were more reliable compared to those of linear models. The presentation form (green-dried, silage-dried and silage-wet form) of biomasses to the NIR spectrometer did not influence the performances of the NIR prediction models. The accuracy of the BMP method should be improved to enhance further the BMP prediction models.

Assessment of energy crops alternative to maize for biogas production in the Greater Region.

The biomethane yield of various energy crops, selected among potential alternatives to maize in the Greater Region, was assessed. The biomass yield, the volatile solids (VS) content and the biochemical methane potential (BMP) were measured to calculate the biomethane yield per hectare of all plant species. For all species, the dry matter biomass yield and the VS content were the main factors that influence, respectively, the biomethane yield and the BMP. Both values were predicted with good accuracy by linear regressions using the biomass yield and the VS as independent variable. The perennial crop miscanthus appeared to be the most promising alternative to maize when harvested as green matter in autumn and ensiled. Miscanthus reached a biomethane yield of 5.5 ± 1 × 10(3)m(3)ha(-1) during the second year after the establishment, as compared to 5.3 ± 1 × 10(3)m(3)ha(-1) for maize under similar crop conditions.

Structural carbohydrates in a plant biomass: correlations between the detergent fiber and dietary fiber methods.

We compared the detergent fiber and dietary fiber methods to analyze the cellulose and hemicellulose contents of commelinid and non-commelinid magnoliophyta biomass. A good linear correlation was found between both methods. Compared to the more accurate dietary fiber method, the detergent fiber method overestimates the content of cellulose, whereas the detergent fiber method, as compared to the dietary fiber method, overestimates and underestimates the hemicellulose content in commelinid and non-commelinid magnoliophyta biomass, respectively. Because of the good linear correlations, conversion factors were determined to predict the cellulose, hemicellulose, and xylan contents to be expected from the dietary fiber method, on the basis of analyses made by the faster, cheaper, and more commonly practiced detergent fiber method. Nevertheless, the dietary fiber method offers the advantage of providing the detailed composition of the hemicelluloses (xylan, arabinan, hemicellulosic glucan, galactan, and mannan), and that is of interest for biorefining purposes.

Assessment of factors influencing the biomethane yield of maize silages.

A large set of maize silage samples was produced to assess the major traits influencing the biomethane production of this crop. The biomass yield, the volatile solids contents and the biochemical methane potential (BMP) were measured to calculate the biomethane yield per hectare (average=7266m(3)ha(-1)). The most influential factor controlling the biomethane yield was the cropping environment. The biomass yield had more impact than the anaerobic digestibility. Nevertheless, the anaerobic digestibility of maize silages was negatively affected by high VS content in mature maize. Late maturing maize varieties produced high biomass yield with high digestibility resulting in high biomethane yield per hectare. The BMP was predicted with good accuracy using solely the VS content.

Chemical characteristics and biofuels potentials of various plant biomasses: influence of the harvesting date.

BACKGROUND: An optimal valorization of plant biomasses to produce biofuels requires a good knowledge of the available contents and molecular composition of the main chemical components, which changes with the harvesting date. Therefore, we assessed the influence of harvesting date on the chemical characteristics of various energy crops in the context of their conversion to biofuels. RESULTS: We showed that the biomass chemical composition, enzymatic digestible organic matter, bioethanol and thermal energy production potential for each species are impacted by the harvesting date. The proportion of enzymatically digestible organic matter decreases as the harvesting date is delayed. This is related to the increase in cellulose and lignin contents. The suitability of the biomasses for bioethanol production increases with harvest stage, as the total carbohydrates content increases. The suitability of the biomasses as a source of thermal energy increases according to the harvesting date as the proportion of organic matter increases and the content of mineral compounds decreases. For all investigated energy conversions, the best harvesting period is autumn, because the significantly higher crop dry matter yield largely compensates for the sometimes slightly less favorable chemical characteristics. CONCLUSION: While the biomass composition of energy crops changes with harvest stage, the dry biomass yield per unit area is the main factor that controls the total amount of chemical components, digestible organic matter, bioethanol and thermal energy that can be expected to be harvested per unit area. The biomass compositions presented in this paper are essential to investigate their suitability for bioenergy conversion.

Monitoring the active conformation of green fluorescent protein (GFP) and ß-glucosidase adsorbed on soil particles.

In order to determine the effect of various soil components on the activity of proteins, we monitored the fluorescence and the enzymatic activity of, respectively, green fluorescent protein (GFP) and ß-glucosidase adsorbed on fine soil particles. We also monitored the activity of these proteins in the presence of components that are representative of soil colloids: a montmorillonite clay, goethite and organic matter extracted from soil. Upon adsorption on clay and goethite, GFP lost its fluorescence properties while ß-glucosidase suffered only a partial loss of its catalytic activity. Extractable organic matter had an inactivating role on GFP while it did not cause inactivation of ß-glucosidase. When GFP and ß-glucosidase adsorbed on particles from natural soil samples, their behaviour was consistent with the behaviour observed for these proteins in the presence of the separate components, suggesting that the macroscopic activity of proteins adsorbed on soil particles corresponds to an average of the activities of proteins adsorbed on a mixture of surfaces. The monitoring of the proteins on soil particles with different organic matter contents has also shown that organic matter can have different effects (protecting or inactivating) on different proteins.

Composition of structural carbohydrates in biomass: precision of a liquid chromatography method using a neutral detergent extraction and a charged aerosol detector.

We adapted and optimized a method to quantify the cellulose, hemicellulose, xylan, arabinan, mannan, galactan contents in lignocellulosic biomass. This method is based on a neutral detergent extraction (NDE) of the interfering biomass components, followed by a sulfuric acid hydrolysis (SAH) of the structural polysaccharides, and a liquid chromatography with charged aerosol detection (LC-CAD) to analyze the released monosaccharides. The first step of this NDE-SAH-LC-CAD method aims at removing all compounds that interfere with the subsequent sulphuric acid hydrolysis or with the subsequent chromatographic quantification of the cellulosic and hemicellulosic monosaccharides. This step includes starch hydrolysis with an analytical thermostable α-amylase followed by an extraction of soluble compounds by a Van Soest neutral detergent solution (NDE). The aim of this paper was to assess the precision of this method when choosing fiber sorghum (Sorghum bicolor (L.) Moench), tall fescue (Festuca arundinacea Schreb.) and fiber hemp (Cannabis sativa L.) as representative lignocellulosic biomass. The cellulose content of fiber sorghum, tall fescue and fiber hemp determined by the NDE-SAH-LC-CAD method were 28.7 ± 1.0, 29.7 ± 1.0 and 43.6 ± 1.2g/100g dry matter, respectively, and their hemicellulose content were 18.6 ± 0.5, 16.5 ± 0.5 and 14.5 ± 0.2g/100g dry matter, respectively. Cellulose, mannan and galactan contents were higher in fiber hemp (dicotyledon) as compared to tall fescue and fiber sorghum (monocotyledons). The xylan, arabinan and total hemicellulose contents were higher in tall fescue and fiber sorghum as compared to fiber hemp. The precision of the NDE-SAH-LC-CAD method was better for polysaccharide concentration levels above 1g/100g dry matter. Galactan analysis offered a lower precision, due to a lower CAD response intensity to galactose as compared to the other monosaccharides. The dispersions of the results (expanded uncertainty) of the NDE-SAH-LC-CAD method were smaller as compared to the Van Soest (VS) method. In addition, the NDE-SAH-LC-CAD method was able to provide additional information on the composition of the hemicellulose (xylan, arabinan, mannan and galactan content) that is not provided by the Van Soest method. The NDE-SAH-LC-CAD method offers also the advantage of a better specificity for hemicellulose and cellulose, as compared to the NREL and Uppsala methods.

Fate of amyloid fibrils introduced in wastewater sludge.

Laboratory data on the behaviour of the pathogenic form of the prion protein (PrP(Sc)) in environmental matrices such as sewage sludge is scarce. Direct experiments with this misfolded protein require strict safety measures, pathogen class-3 facilities and costly reagents. However, preliminary data can be generated by non-pathogenic model systems that involve lower costs and simpler manipulation. We chose amyloid-like fibrils formed from the well-studied protein lysozyme as a model because, in the case of an accidental contamination of sewage sludge, PrP(Sc) would most likely be in the form of amyloid fibrils. All amyloid fibrils have similar structural features and tend to bind to thioflavin-T, thereby enhancing the fluorescence yield of the dye. We used this fluorescence enhancement to monitor amyloid fibrils introduced into activated sludge. We observed that, in the presence of sludge flocs, the concentration of amyloid fibrils that are detectable through the enhancement of thioflavin-T fluorescence decreased as a function of time, most likely due to hydrolysis of the fibrils by sludge proteases. Some of the fluorescence loss seems also due to the binding of sludge exopolymers to amyloid fibrils.

Energy and CO2 balance of maize and grass as energy crops for anaerobic digestion.

Energy crops can be used to feed anaerobic digesters and produce renewable energy. However, sustainability of this option requires that it contributes to a net production of renewable energy and a net reduction of fossil CO2 emission. In this paper, the net balance of CO2 emission and renewable energy production is assessed for maize and grass energy crops produced in several agricultural systems relevant for Southern Belgium and surrounding areas. The calculated net energy yields are 8-25 (maize) and 7.4-15.5 (grass) MWh of renewable CH4 per MWh of fossil energy invested, depending on the agricultural option considered. After conversion to electricity, the specific CO2 emissions range from 31 to 104 kg(CO2)MWhelectricity(-1), depending on the case considered. This corresponds to a significant reduction in CO2 emissions compared to the current reference gas-steam turbine technology which produces 456 kg(CO2)MWhelectricity(-1).

Factors affecting the fate of active proteins introduced in wastewater sludges: investigation with green fluorescent protein.

Green fluorescent protein (GFP) was used as a reporter protein to investigate the interactions and fate of the active conformation of proteins in wastewater sludge. GFP was chosen because its fluorescence is dependent on the integrity of its native conformation. We identified factors that cause the loss of GFP fluorescence when this protein is introduced in aerobic or anaerobic sludge. In both systems, soluble polymers present in the liquid fraction caused an initial loss of fluorescence, but stabilized the remaining fluorescent GFP molecules. In aerobic sludge, interaction of GFP with the sludge solids initially caused an additional loss of fluorescence but the remaining fluorescence kept fairly constant over the following hours. In anaerobic sludge, on the contrary, interaction of GFP with the sludge solids caused a temperature dependent loss of fluorescence, probably related to the presence of precipitated ferrous sulfide. No direct relationship was found between sludge protease activity and loss of GFP fluorescence, suggesting that proteases are not the primary factor controlling the fate of the active form of proteins in wastewater sludges.

Method for monitoring the fate of green fluorescent protein added to aerobic and anaerobic wastewater sludge.

The fate of active proteins in environmental matrices such as wastewater sludge, soil, and organic amendments is not well understood . In the present paper, we report the use of green fluorescent protein (GFP) as a probe protein to investigate the behaviour of proteins in wastewater sludge. We developed a procedure to quantitatively detect the active form of this protein in such a matrix. The procedure is based on the fluorimetric analysis of GFP in the separated liquid and solid fractions of sludge. We then tested the suitability of the approach by monitoring GFP added to aerobic and anaerobic sludge. Under aerobic conditions at 20 degrees C, most GFP immediately associated with the sludge solid fraction. About 20% of the fluorescence due to solid fraction associated GFP was still present after 72 h, which suggests a relative persistence of proteins in this system. Under anaerobic conditions at 35 degrees C, fluorescence signal due to GFP was reduced by 90% after only 6 h.