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1.
Sci Rep ; 8(1): 6125, 2018 Apr 12.
Article in English | MEDLINE | ID: mdl-29651004

ABSTRACT

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.

2.
Sci Rep ; 8(1): 3872, 2018 03 01.
Article in English | MEDLINE | ID: mdl-29497098

ABSTRACT

Disturbances control rainforest dynamics, and, according to the intermediate disturbance hypothesis (IDH), disturbance regime is a key driver of local diversity. Variations in disturbance regimes and their consequences on regional diversity at broad spatiotemporal scales are still poorly understood. Using multidisciplinary large-scale inventories and LiDAR acquisitions, we developed a robust indicator of disturbance regimes based on the frequency of a few early successional and widely distributed pioneer species. We demonstrate at the landscape scale that tree-species diversity and disturbance regimes vary with climate and relief. Significant relationships between the disturbance indicator, tree-species diversity and soil phosphorus content agree with the hypothesis that rainforest diversity is controlled both by disturbance regimes and long-term ecosystem stability. These effects explain the broad-scale patterns of floristic diversity observed between landscapes. In fact, species-rich forests in highlands, which have benefited from long-term stability combined with a moderate and regular regime of local disturbances, contrast with less diversified forests on recently shaped lowlands, which have undergone more recent changes and irregular dynamics. These results suggest that taking the current disturbance regime into account and including geomorphological stratifications in climate-vegetation models may be an effective way to improve the prediction of changes in species diversity under climate change.


Subject(s)
Biodiversity , Trees/growth & development , Climate Change , Conservation of Natural Resources , Ecosystem , Forests , Guyana , Models, Biological , Rainforest , Seasons , Soil , Time Factors , Tropical Climate
3.
Environ Microbiol ; 16(7): 2099-111, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24131520

ABSTRACT

Variations in the patterns of diversity of symbionts have been described worldwide on Mimosa pudica, a pan-tropical invasive species that interacts with both α and ß-rhizobia. In this study, we investigated if symbiont competitiveness can explain these variations and the apparent prevalence of ß- over α-rhizobia. We developed an indirect method to measure the proportion of nodulation against a GFP reference strain and tested its reproducibility and efficiency. We estimated the competitiveness of 54 strains belonging to four species of ß-rhizobia and four of α-rhizobia, and the influence of the host genotype on their competitiveness. Our results were compared with biogeographical patterns of symbionts and host varieties. We found: (i) a strong strain effect on competitiveness largely explained by the rhizobial species, with Burkholderia phymatum being the most competitive species, followed by B. tuberum, whereas all other species shared similar and reduced levels of competitiveness; (ii) plant genotype can increase the competitiveness of Cupriavidus taiwanensis. The latter data support the likelihood of the strong adaptation of C. taiwanensis with the M. pudica var. unijuga and help explain its prevalence as a symbiont of this variety over Burkholderia species in some environments, most notably in Taiwan.


Subject(s)
Burkholderia/classification , Cupriavidus/classification , Mimosa/microbiology , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhizobium/classification , Symbiosis , Burkholderia/genetics , Cupriavidus/genetics , Genotype , Introduced Species , Mimosa/physiology , Molecular Sequence Data , Phylogeography , Plant Root Nodulation/physiology , Reproducibility of Results , Rhizobium/genetics , Taiwan
4.
FEMS Microbiol Ecol ; 79(2): 487-503, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22093060

ABSTRACT

The genetic diversity of 221 Mimosa pudica bacterial symbionts trapped from eight soils from diverse environments in French Guiana was assessed by 16S rRNA PCR-RFLP, REP-PCR fingerprints, as well as by phylogenies of their 16S rRNA and recA housekeeping genes, and by their nifH, nodA and nodC symbiotic genes. Interestingly, we found a large diversity of beta-rhizobia, with Burkholderia phymatum and Burkholderia tuberum being the most frequent and diverse symbiotic species. Other species were also found, such as Burkholderia mimosarum, an unnamed Burkholderia species and, for the first time in South America, Cupriavidus taiwanensis. The sampling site had a strong influence on the diversity of the symbionts sampled, and the specific distributions of symbiotic populations between the soils were related to soil composition in some cases. Some alpha-rhizobial strains taxonomically close to Rhizobium endophyticum were also trapped in one soil, and these carried two copies of the nodA gene, a feature not previously reported. Phylogenies of nodA, nodC and nifH genes showed a monophyly of symbiotic genes for beta-rhizobia isolated from Mimosa spp., indicative of a long history of interaction between beta-rhizobia and Mimosa species. Based on their symbiotic gene phylogenies and legume hosts, B. tuberum was shown to contain two large biovars: one specific to the mimosoid genus Mimosa and one to South African papilionoid legumes.


Subject(s)
Burkholderia/genetics , Mimosa/microbiology , Base Sequence , Burkholderia/classification , Burkholderia/isolation & purification , Cupriavidus/classification , Cupriavidus/growth & development , French Guiana , Genetic Variation , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics , Soil , South America , Symbiosis
5.
PLoS One ; 6(10): e25850, 2011.
Article in English | MEDLINE | ID: mdl-21991372

ABSTRACT

While the populations of large herbivores are being depleted in many tropical rainforests, the importance of their trophic role in the ecological functioning and biodiversity of these ecosystems is still not well evaluated. This is due to the outstanding plant diversity that they feed upon and the inherent difficulties involved in observing their elusive behaviour. Classically, the diet of elusive tropical herbivores is studied through the observation of browsing signs and macroscopic analysis of faeces or stomach contents. In this study, we illustrate that the original coupling of classic methods with genetic and ethnobotanical approaches yields information both about the diet diversity, the foraging modalities and the potential impact on vegetation of the largest terrestrial mammal of Amazonia, the lowland tapir. The study was conducted in the Guianan shield, where the ecology of tapirs has been less investigated. We identified 92 new species, 51 new genera and 13 new families of plants eaten by tapirs. We discuss the relative contribution of our different approaches, notably the contribution of genetic barcoding, used for the first time to investigate the diet of a large tropical mammal, and how local traditional ecological knowledge is accredited and valuable for research on the ecology of elusive animals.


Subject(s)
Diet , Perissodactyla/physiology , Plants/genetics , Animals , Biodiversity , Ethnobotany , Feces , French Guiana , Fruit , Geography , Herbivory/physiology , Seasons , Species Specificity
6.
Plant Cell Environ ; 34(8): 1332-44, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21486302

ABSTRACT

We assessed the extent of recent environmental changes on leaf morphological (stomatal density, stomatal surface, leaf mass per unit area) and physiological traits (carbon isotope composition, δ(13)C(leaf) , and discrimination, Δ(13)C(leaf) , oxygen isotope composition, δ(18)O(leaf) ) of two tropical rainforest species (Dicorynia guianensis; Humiria balsamifera) that are abundant in the Guiana shield (Northern Amazonia). Leaf samples were collected in different international herbariums to cover a 200 year time-period (1790-2004) and the whole Guiana shield. Using models describing carbon and oxygen isotope fractionations during photosynthesis, different scenarios of change in intercellular CO(2) concentrations inside the leaf (C(i)), stomatal conductance (g), and photosynthesis (A) were tested in order to understand leaf physiological response to increasing air CO(2) concentrations (C(a)). Our results confirmed that both species displayed physiological response to changing C(a) . For both species, we observed a decrease of about 1.7‰ in δ(13)C(leaf) since 1950, without significant change in Δ(13)C(leaf) and leaf morphological traits. Furthermore, there was no clear change in δ(18)O(leaf) for Humiria over this period. Our simulation approach revealed that an increase in A, rather than a decrease in g, explained the observed trends for these tropical rainforest species, allowing them to maintain a constant ratio of C(i)/C(a) .


Subject(s)
Carbon Dioxide , Plant Leaves/physiology , Plant Stomata/physiology , Trees/physiology , Carbon Isotopes , Cellulose/chemistry , Computer Simulation , French Guiana , History, 18th Century , History, 19th Century , History, 20th Century , History, 21st Century , Oxygen Isotopes , Photosynthesis/physiology , Plant Transpiration/physiology , Tropical Climate
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