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1.
Lab Chip ; 8(5): 678-88, 2008 May.
Article in English | MEDLINE | ID: mdl-18432336

ABSTRACT

The molecular mechanisms underlying odorant detection have been investigated using the chip based SPR technique by focusing on the dynamic interactions between transmembrane Olfactory Receptor OR1740, odorant ligands and soluble Odorant-Binding Protein (OBP-1F). The OR1740 present in the lipid bilayer of nanosomes derived from transformed yeasts specifically bound OBP-1F. The receptor preferential odorant ligand helional released bound OBP-1F from the OR-OBP complex, while unrelated odorants failed to do so. OBP-1F modified the functional OR1740 dose-response to helional, from a bell-shaped to a saturation curve, thus preserving OR activity at high ligand concentration. This unravels an active role for OBPs in olfaction, in addition to passive transport or a scavenger role. This sensorchip technology was applied to assessing native OBP-1F in a biological sample: rat olfactory mucus also displayed significant binding to OR1740 nanosomes, and the addition of helional yielded the dissociation of mucus OBP from the receptor.


Subject(s)
Microfluidic Analytical Techniques/instrumentation , Microfluidic Analytical Techniques/methods , Receptors, Odorant/chemistry , Animals , Biosensing Techniques , Ligands , Male , Mucus/chemistry , Protein Binding , Rats , Rats, Wistar , Stimulation, Chemical , Time Factors
2.
PLoS Pathog ; 3(8): e125, 2007 Aug 31.
Article in English | MEDLINE | ID: mdl-17784787

ABSTRACT

The mechanisms underlying prion-linked neurodegeneration remain to be elucidated, despite several recent advances in this field. Herein, we show that soluble, low molecular weight oligomers of the full-length prion protein (PrP), which possess characteristics of PrP to PrPsc conversion intermediates such as partial protease resistance, are neurotoxic in vitro on primary cultures of neurons and in vivo after subcortical stereotaxic injection. Monomeric PrP was not toxic. Insoluble, fibrillar forms of PrP exhibited no toxicity in vitro and were less toxic than their oligomeric counterparts in vivo. The toxicity was independent of PrP expression in the neurons both in vitro and in vivo for the PrP oligomers and in vivo for the PrP fibrils. Rescue experiments with antibodies showed that the exposure of the hydrophobic stretch of PrP at the oligomeric surface was necessary for toxicity. This study identifies toxic PrP species in vivo. It shows that PrP-induced neurodegeneration shares common mechanisms with other brain amyloidoses like Alzheimer disease and opens new avenues for neuroprotective intervention strategies of prion diseases targeting PrP oligomers.


Subject(s)
Brain/drug effects , Neurons/drug effects , Prion Diseases/chemically induced , Prions/toxicity , Animals , Antibodies, Blocking/pharmacology , Antibodies, Monoclonal/pharmacology , Apoptosis/drug effects , Brain/metabolism , Brain/pathology , Cells, Cultured , Female , Intracellular Membranes/drug effects , Mice , Mice, Inbred C57BL , Mice, Knockout , Neurons/metabolism , Neurons/pathology , Prion Diseases/metabolism , Prion Diseases/pathology , Prions/chemistry , Prions/immunology , Prions/metabolism , Protein Isoforms , Protein Structure, Secondary
3.
Proc Natl Acad Sci U S A ; 104(18): 7414-9, 2007 May 01.
Article in English | MEDLINE | ID: mdl-17442756

ABSTRACT

The prion protein (PrP) propensity to adopt different structures is a clue to its biological role. PrP oligomers have been previously reported to bear prion infectivity or toxicity and were also found along the pathway of in vitro amyloid formation. In the present report, kinetic and structural analysis of ovine PrP (OvPrP) oligomerization showed that three distinct oligomeric species were formed in parallel, independent kinetic pathways. Only the largest oligomer gave rise to fibrillar structures at high concentration. The refolding of OvPrP into these different oligomers was investigated by analysis of hydrogen/deuterium exchange and introduction of disulfide bonds. These experiments revealed that, before oligomerization, separation of contacts in the globular part (residues 127-234) occurred between the S1-H1-S2 domain (residues 132-167) and the H2-H3 bundle (residues 174-230), implying a conformational change of the S2-H2 loop (residues 168-173). The type of oligomer to be formed depended on the site where the expansion of the OvPrP monomer was initiated. Our data bring a detailed insight into the earlier conformational changes during PrP oligomerization and account for the diversity of oligomeric entities. The kinetic and structural mechanisms proposed here might constitute a physicochemical basis of prion strain genesis.


Subject(s)
Disulfides/chemistry , Disulfides/metabolism , Prions/chemistry , Prions/metabolism , Animals , Deuterium Exchange Measurement , Hot Temperature , Kinetics , Microscopy, Electron , Models, Molecular , Prions/isolation & purification , Prions/ultrastructure , Protein Structure, Quaternary , Protein Structure, Tertiary , Sheep
4.
Anal Chem ; 79(9): 3280-90, 2007 May 01.
Article in English | MEDLINE | ID: mdl-17394286

ABSTRACT

There is substantial interest in engineering solid supports to achieve functional immobilization of membrane receptors both for investigation of their biological function and for the development of novel biosensors. Three simple and practical strategies for immobilization of a human olfactory receptor carried by nanosomes are presented. The basis of the functionalization of solid gold surfaces is a self-assembled monolayer (SAM) containing biotinyl groups. Biotinyl groups are subsequently used to attach neutravidin and then biotinylated monoclonal antibody directed against the receptor to allow its specific grafting. Surface plasmon resonance technique is implemented for real-time monitoring of step-by-step surface functionalization and, in addition, for testing the functional response of immobilized olfactory receptors. We show that OR1740 is functional when immobilized via a tag attached to its C-terminus, but not via its N-terminus. Finally, we demonstrate that gold surfaces can be patterned by the SAMs tested using microcontact printing. AFM images of immobilized nanosomes onto a patterned surface suggest that small nanosomes flatten and fuse into larger vesicles but do not merge into a continuous layer. The whole study emphasizes the outstanding performances of the BAT/PEGAT SAM, which could be useful for developing on-a-chip sensor formats for membrane receptor investigations and use.


Subject(s)
Biosensing Techniques/methods , Gold/chemistry , Nanoparticles/chemistry , Receptors, Odorant/chemistry , Antibodies, Monoclonal/chemistry , Avidin/chemistry , Humans , Membranes, Artificial , Microscopy, Atomic Force/methods , Nanoparticles/ultrastructure , Particle Size , Sensitivity and Specificity , Surface Plasmon Resonance/methods , Surface Properties , Time Factors
5.
Plant J ; 50(2): 197-206, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17376160

ABSTRACT

The phytohormone auxin has been known for >50 years to be required for entry into the cell cycle. Despite the critical effects exerted by auxin on the control of cell division, the molecular mechanism by which auxin controls this pathway is poorly understood, and how auxin is perceived upstream of any change in the cell cycle is unknown. Auxin Binding Protein 1 (ABP1) is considered to be a candidate auxin receptor, triggering early modification of ion fluxes across the plasma membrane in response to auxin. ABP1 has also been proposed to mediate auxin-dependent cell expansion, and is essential for early embryonic development. We investigated whether ABP1 has a role in the cell cycle. Functional inactivation of ABP1 in the model plant cell system BY2 was achieved through cellular immunization via the conditional expression of a single-chain fragment variable (scFv). This scFv was derived from a well characterized anti-ABP1 monoclonal antibody previously shown to block the activity of the protein. We demonstrate that functional inactivation of ABP1 results in cell-cycle arrest, and provide evidence that ABP1 plays a critical role in regulation of the cell cycle by acting at both the G1/S and G2/M checkpoints. We conclude that ABP1 is essential for the auxin control of cell division and is likely to constitute the first step of the auxin-signalling pathway mediating auxin effects on the cell cycle.


Subject(s)
Cell Cycle/physiology , Plant Proteins/physiology , Receptors, Cell Surface/physiology , Animals , Cell Division/physiology , Cells, Cultured , Flow Cytometry , G1 Phase/physiology , G2 Phase/physiology , Immunoglobulin Variable Region/genetics , Immunoglobulin Variable Region/immunology , Immunoglobulin Variable Region/metabolism , Immunoprecipitation , Mice , Plant Proteins/immunology , Plant Proteins/metabolism , Plants, Genetically Modified , Protein Binding , Receptors, Cell Surface/immunology , Receptors, Cell Surface/metabolism , Surface Plasmon Resonance , Nicotiana/cytology , Nicotiana/genetics , Nicotiana/metabolism
6.
J Gen Virol ; 88(Pt 1): 196-206, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17170452

ABSTRACT

The respiratory syncytial virus (RSV) phosphoprotein (P) is a major polymerase co-factor that interacts with both the large polymerase fragment (L) and the nucleoprotein (N). The N-binding domain of RSV P has been investigated by co-expression of RSV P and N proteins in Escherichia coli. Pull-down assays performed with a series of truncated forms of P fused to glutathione S-transferase (GST) revealed that the region comprising the last nine C-terminal amino acid residues of P (233-DNDLSLEDF-241) is sufficient for efficient binding to N. Site-directed mutagenesis shows that the last four residues of this peptide are crucial for binding and must be present at the end of a flexible C-terminal tail. The presence of the P oligomerization domain (residues 100-160) was an important stabilizing factor for the interaction. The tetrameric full-length P fused to GST was able to pull down both helical and ring structures, whereas a monomeric C-terminal fragment of P (residues 161-241) fused to GST pulled down exclusively RNA-N rings. Electron-microscopy analysis of the purified rings showed the presence of two types of complex: undecamers (11N) and decamers (10N). Mass-spectrometry analysis of the RNA extracted from rings after RNase A treatment showed two peaks of 22,900 and 24,820 Da, corresponding to a mean RNA length of 67 and 73 bases, respectively. These results suggest strongly that each N subunit contacts 6 nt, with an extra three or four bases further protected from nuclease digestion by the ring structure at both the 5' and 3' ends.


Subject(s)
Phosphoproteins/metabolism , Promoter Regions, Genetic/physiology , Respiratory Syncytial Viruses/chemistry , Ribonucleoproteins/chemistry , Amino Acid Substitution , Mass Spectrometry , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Phosphoproteins/chemistry , RNA, Bacterial/analysis , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Ribonucleoproteins/metabolism
7.
Lab Chip ; 6(8): 1026-32, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16874373

ABSTRACT

We describe how mammalian olfactory receptors (ORs) could be used as sensing elements of highly specific and sensitive bioelectronic noses. An OR and an appropriate G(alpha) protein were co-expressed in Saccharomyces cerevisiae cells from which membrane nanosomes were prepared, and immobilized on a sensor chip. By Surface Plasmon Resonance, we were able to quantitatively evaluate OR stimulation by an odorant, and G protein activation. We demonstrate that ORs in nanosomes discriminate between odorant ligands and unrelated odorants, as in whole cells. This assay also provides the possibility for quantitative assessment of the coupling efficiency of the OR with different G(alpha) subunits, without the interference of the cellular transduction pathway. Our findings will be useful to develop a new generation of electronic noses for detection and discrimination of volatile compounds, particularly amenable to micro- and nano-sensor formats.


Subject(s)
Biosensing Techniques , Nanoparticles , Odorants/analysis , Receptors, Odorant/chemistry , Animals , Bioartificial Organs , Cells, Immobilized , GTP-Binding Protein alpha Subunits/chemistry , GTP-Binding Protein alpha Subunits/genetics , Humans , Mice , Rats , Receptors, Odorant/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Saccharomyces cerevisiae/genetics
8.
Biochim Biophys Acta ; 1764(7): 1218-26, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16777497

ABSTRACT

One of symptoms of transmissible spongiform encephalopathies is associated with the transformation of normal cellular prion protein, PrP, in its amyloid isoform resistant to proteolytic cleavage. The present study shows that interaction with copper ions converts both monomeric recombinant scrapie-susceptible PrP-VRQ and scrapie-resistant PrP-ARR variants into protease-resistant soluble oligomers with amyloid characteristics -- dominant beta-sheet secondary structure and interaction with thioflavine S. In contrast, binding of zinc ions resulting in the same resistance to proteolysis does not provoke transformation of alpha-helical monomeric structure of both PrP polymorphic variants. Cleavage of PrP N-terminus destabilises soluble form of such aggregates, and N-truncated PrPrec complexed with metal cations precipitate. N-truncated PrPrec complexed with Zn precipitated much faster than N-truncated PrPrec complexed with Cu. According to the hypothesis about the key role of small PrP oligomers in PrP(C)-PrP(Sc) transformation, formation of soluble oligomers of PrP complexed with Cu can constitute an additional element in TSE propagation. Identical metal-chelating behaviour of two studied polymorphic PrPrec variants conferring different susceptibilities of sheep to scrapie could indicate their different capabilities to form fibrils. This could imply also that other factors than physico-chemical differences between PrP-VRQ and PrP-ARR and the differences in PrP transformation are responsible for the onset of TSE.


Subject(s)
Alleles , Amyloid/chemistry , Copper/chemistry , PrPC Proteins/chemistry , Animals , Benzothiazoles , Cations, Divalent/chemistry , Circular Dichroism , Copper/pharmacology , Endopeptidase K/chemistry , Hot Temperature , Hydrolysis , Light , Particle Size , Peptide Fragments/analysis , Peptide Fragments/chemistry , Polymorphism, Genetic/genetics , PrPC Proteins/genetics , Protein Denaturation/drug effects , Protein Structure, Secondary/drug effects , Recombinant Proteins/chemistry , Scattering, Radiation , Sheep , Sodium Chloride/chemistry , Sodium Chloride/pharmacology , Spectrometry, Fluorescence , Thiazoles/chemistry , Zinc/chemistry
9.
Environ Sci Technol ; 40(5): 1497-503, 2006 Mar 01.
Article in English | MEDLINE | ID: mdl-16568762

ABSTRACT

Prions, the infectious agents thought to be responsible for transmissible spongiform encephalopathies, may contaminate soils and have been reported to persist there for years. We have studied the adsorption and desorption of a model recombinant prion protein on montmorillonite and natural soil samples in order to elucidate mechanisms of prion retention in soils. Clay minerals, such as montmorillonite, are known to be strong adsorbents for organic molecules, including proteins. Montmorillonite was found to have a large and selective adsorption capacity for both the normal and the aggregated prion protein. Adsorption occurred mainly via the N-terminal domain of the protein. Incubation with standard buffers and detergents did not desorb the full length protein from montmorillonite, emphasizing the largely irreversible trapping of prion protein by this soil constituent. An original electroelution method was developed to extract prion protein from both montmorillonite and natural soil samples, allowing quantification when coupled with rapid prion detection tests. This easy-to-perform method produced concentrated prion protein extracts and allowed detection of protein at levels as low as 0.2 ppb in natural soils.


Subject(s)
Bentonite/chemistry , Prions/isolation & purification , Soil/analysis , Adsorption , Animals , Blotting, Western , Recombinant Proteins/isolation & purification , Sensitivity and Specificity , Swine
10.
Biomacromolecules ; 6(6): 3425-32, 2005.
Article in English | MEDLINE | ID: mdl-16283775

ABSTRACT

Prions can be disseminated in soils. Their interaction with soil minerals is a key factor for the assessment of risks associated with the transport of their infectivity. We did not examine here the infectivity itself but the adsorption kinetics of an ovine recombinant prion protein (ovine PrPrec), as a noninfectious model protein, on muscovite mica, a phyllosilicate with surface properties analogous to soil clays, in conditions of laminar flow through a channel. The protein was labeled with (125)I, and its adsorption examined between pH 4.0 and 9.0. At wall shear rate 100 s(-1), we found the process to be controlled mainly by transport at the beginning of the adsorption process. Additional experiments at 1000 s(-1) (pH 5 and 6) determined that the diffusion coefficient was in accordance with the hydrodynamic radius measured by size exclusion chromatography. The pseudo-plateau of the interfacial concentration with time was compatible with more than a monolayer and suggests the presence of aggregates. Desorption was not observed in the presence of buffer between pH 4 and 9 and sheep plasma, while the addition of alkaline detergent or 10(-1) M NaOH allowed an almost complete removal from the interface. The ensemble of results suggests that the largely irreversible adsorption of the ovine PrPrec onto mica is mainly due to electrostatic attraction between the protein and the highly negatively charged mica surface. Possible consequences for the mode of dissemination of prion proteins in soils are indicated.


Subject(s)
Aluminum Silicates/chemistry , Prions/chemistry , Recombinant Proteins/chemistry , Soil , Adsorption , Animals , Buffers , Chromatography , Clay , Detergents/pharmacology , Dose-Response Relationship, Drug , Glycosylation , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Macromolecular Substances/chemistry , Sheep , Specimen Handling , Surface Properties , Time Factors
11.
Metabolism ; 54(8): 1087-94, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16092060

ABSTRACT

The prevention of atherosclerosis depends on the high-density lipoprotein (HDL) capacity to stimulate the efflux of unesterified cholesterol (UC). We tested here the effects of 2 HDL apolipoproteins, apo A-I and the 7-kd anionic peptide factor (APF), on the UC efflux by human endothelial ECV 304 cells in culture. Apolipoprotein A-I (10 micromol/L) or APF (3.5 micromol/L) in lipid-free forms or small particles (13 nm with apo A-I or 19 nm with APF) were incubated in the presence of [4-14C]UC. The phosphatidylcholines (PCs) were present either at a low level (0.35 mmol/L with apo A-I or 0.20 mmol/L with APF) or at a high level (1 mmol/L with apo A-I). We also tested either large 53-nm bile lipoprotein complex-like particles (3.5 micromol/L APF [13 microg/500 microL]) with a high PC level (0.65 mmol/L) or a 9-residue synthetic peptide (13 microg/500 microL), derived from the NH2-terminal domain of HDL3-APF, in a lipid-free or low-lipidated (0.20 mmol/L PCs) form. A control was developed in absence of the added compounds. A rapid [4-14C]UC efflux mediated by APF added in free form or in 19-nm complexes was 2.2- to 2.3-fold higher than that mediated by apo A-I in free form or in 13-nm particles (P < .05). The level of this high APF-related efflux was comparable with that obtained with the 12-nm native HDLs (10 micromol/L apo A-I) or free PCs (1 mmol/L). The increase in the UC efflux was much more limited (1.4-fold) in the presence of the 53-nm APF/high-PC particles, but it was higher than that mediated by apo A-I. In addition, the efflux mediated by the synthetic peptide, in lipid-free or low-lipidated form, constituted the major part of that related to the full-length APF. Thus, all these particles are very active HDL components, able to act as cholesterol acceptors. Interestingly, we further showed a new anti-atherogenic property of APF as well as its metabolic importance and clinical relevance. By its involvement in the first step of the reverse cholesterol transport, APF could reduce the risk of cardiovascular disease.


Subject(s)
Apoproteins/metabolism , Calcium-Binding Proteins/metabolism , Cholesterol/pharmacokinetics , Endothelium, Vascular/metabolism , Lipoproteins, HDL/pharmacokinetics , Apoproteins/chemistry , Calcium-Binding Proteins/chemistry , Carbon Radioisotopes , Cells, Cultured , Endothelium, Vascular/cytology , Humans , Lipoproteins, LDL/pharmacokinetics , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Protein Structure, Tertiary
12.
Biochim Biophys Acta ; 1724(3): 324-32, 2005 Aug 05.
Article in English | MEDLINE | ID: mdl-15927400

ABSTRACT

In this paper, we evaluated the grafting of G-protein-coupled receptors (GPCRs) onto functionalized surfaces, which is a primary requirement to elaborate receptor-based biosensors, or to develop novel GPCR assays. Bovine rhodopsin, a prototypical GPCR, was used in the form of receptor-enriched membrane fraction. Quantitative immobilization of the membrane-bound rhodopsin either non-specifically on a carboxylated dextran surface grafted with long alkyl groups, or specifically on a surface coated with anti-rhodopsin antibody was demonstrated by surface plasmon resonance. In addition, a new substrate based on mixed self-assembled multilayer that anchors specific anti-receptor antibodies was developed. Electrochemical impedance spectroscopy performed upon deposition of membrane-bound rhodopsin of increasing concentration exhibited a significant change, until a saturation level was reached, indicating optimum receptor immobilization on the substrate. The structures obtained with this new immobilization procedure of the rhodopsin in its native membrane environment are stable, with a controlled density of specific anchoring sites. Therefore, such receptor immobilization method is attractive for a range of applications, especially in the field of GPCR biosensors.


Subject(s)
Biosensing Techniques , Rhodopsin/ultrastructure , Animals , Binding Sites, Antibody , Blotting, Western , Cattle , Cell Membrane/chemistry , Cell Membrane/ultrastructure , Electrophoresis, Polyacrylamide Gel , Microscopy, Atomic Force , Negative Staining , Protein Binding , Rhodopsin/chemistry , Rhodopsin/immunology , Rod Cell Outer Segment/chemistry , Rod Cell Outer Segment/ultrastructure , Rosaniline Dyes , Surface Plasmon Resonance
13.
J Mol Biol ; 347(3): 665-79, 2005 Apr 01.
Article in English | MEDLINE | ID: mdl-15755458

ABSTRACT

In pathologies due to protein misassembly, low oligomeric states of the misfolded proteins rather than large aggregates play an important biological role. In prion diseases the lethal evolution is associated with formation of PrP(Sc), a misfolded and amyloid form of the normal cellular prion protein PrP. Although several molecular mechanisms were proposed to account for the propagation of the infectious agent, the events responsible for cell death are still unclear. The correlation between PrP(C) expression level and the rate of disease evolution on one side, and the fact that PrP(Sc) deposition in brain did not strictly correlate with the apparition of clinical symptoms on the other side, suggested a potential role for diffusible oligomers in neuronal death. To get better insight into the molecular mechanisms of PrP(C) oligomerization, we studied the heat-induced oligomerization pathway of the full-length recombinant ovine PrP at acidic pH. This led to the irreversible formation of two well-identified soluble oligomers that could be recovered by size-exclusion chromatography. Both oligomers displayed higher beta-sheet content when compared to the monomer. A sequential two-step multimolecular process accounted for the rate of their formation and their ratio partition, both depending on the initial protein concentration. Small-angle X-ray scattering allowed the determination of the molecular masses for each oligomer, 12mer and 36mer, as well as their distinct oblate shapes. The two species differed in accessibility of polypeptide chain epitopes and of pepsin-sensitive bonds, in a way suggesting distinct conformations for their monomeric unit. The conversion pathway leading to these novel oligomers, displaying contrasted biochemical reactivities, might be a clue to unravel their biological roles.


Subject(s)
Prions/chemistry , Protein Conformation , Animals , Epitope Mapping , Models, Molecular , Polymers/chemistry , Sheep , Thermodynamics
14.
J Agric Food Chem ; 52(20): 6353-60, 2004 Oct 06.
Article in English | MEDLINE | ID: mdl-15453713

ABSTRACT

Transmissible spongiform encephalopathies are caused by accumulation of highly resistant misfolded amyloid prion protein PrPres and can be initiated by penetration of such pathogen molecules from infected tissue to intact organism. Decontamination of animal meal containing amyloid prion protein is proposed thanks to the use of proteolytic enzymes secreted by thermophilic bacteria Thermoanaerobacter, Thermosipho, and Thermococcus subsp. and mesophilic soil bacteria Streptomyces subsp. Keratins alpha and beta, which resemble amyloid structures, were used as the substrates for the screening for microorganisms able to grow on keratins and producing efficient proteases specific for hydrolysis of beta-sheeted proteic structures, hence amyloids. Secretion of keratin-degrading proteases was evidenced by a zymogram method. Enzymes from thermophilic strains VC13, VC15, and S290 and Streptomyces subsp. S6 were strongly active against amyloid recombinant ovine prion protein and animal meal proteins. The studied proteases displayed broad primary specificities hydrolyzing low molecular mass peptide model substrates. Strong amyloidolytic activity of detected proteases was confirmed by experiments of hydrolysis of PrPres in SAFs produced from brain homogenates of mice infected with the 6PB1 BSE strain. The proteases from Thermoanaerobacter subsp. S290 and Streptomyces subsp. S6 are the best candidates for neutralization/elimination of amyloids in meat and bone meal and other protein-containing substances and materials.


Subject(s)
Amyloid/metabolism , Bacteria/enzymology , Meat , Minerals/metabolism , Peptide Hydrolases/metabolism , Prions/metabolism , Animals , Biological Products , Brain Chemistry , Cattle , Encephalopathy, Bovine Spongiform/metabolism , Hydrolysis , Keratins/metabolism , Mice , Streptomyces/enzymology , Thermococcus/enzymology
15.
J Virol ; 78(17): 9270-6, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15308721

ABSTRACT

A key feature of prion encephalopathies is the accumulation of a misfolded form of the host glycoprotein PrP. Cell-free and cell culture studies have shown that the efficiency of conversion of PrP into the disease-associated form is influenced by its amino acid sequence and also by its carbohydrate moiety. Here, we characterize four novel glycoform-dependent monoclonal antibodies raised against prokaryotic recombinant sheep PrP. We demonstrate that these antibodies discriminate the PrP monoglycosylated species, since two of them recognize molecules that have the first Asn glycosylation site occupied (mono1) while the other two recognize molecules glycosylated at the second site (mono2). Remarkably, the recognition of PrP by the anti-mono2 antibodies was strongly influenced by the amino acid present at position 171, i.e., either Gln or Arg. This polymorphism is known to be the main determinant of susceptibility and resistance to scrapie in sheep. Altogether, our findings lead us to propose that each glycan chain controls the accessibility of PrP determinants located close upstream from their attachment site. The monoglycoform-assigned and the allotype-restricted antibodies described here, the first to date, should provide further opportunities to investigate the involvement of each glycan chain in PrP conversion in relation to prion strain diversity and the basis of the resistance conferred by the Arg-171 amino acid.


Subject(s)
Epitopes/chemistry , Epitopes/immunology , Polysaccharides/physiology , PrPC Proteins/chemistry , PrPC Proteins/physiology , Scrapie/etiology , Scrapie/metabolism , Animals , Antibodies, Monoclonal/immunology , Antibody Specificity , Brain/immunology , Brain/metabolism , Epitopes/physiology , Glycosylation , Mice , Polysaccharides/immunology , PrPC Proteins/genetics , PrPC Proteins/immunology , Protein Isoforms/chemistry , Protein Isoforms/immunology , Protein Isoforms/physiology , Scrapie/immunology , Sheep
16.
Proc Natl Acad Sci U S A ; 101(28): 10254-9, 2004 Jul 13.
Article in English | MEDLINE | ID: mdl-15240887

ABSTRACT

Prion diseases are associated with the conversion of the alpha-helix rich prion protein (PrPC) into a beta-structure-rich insoluble conformer (PrPSc) that is thought to be infectious. The mechanism for the PrPC-->PrPSc conversion and its relationship with the pathological effects of prion diseases are poorly understood, partly because of our limited knowledge of the structure of PrPSc. In particular, the way in which mutations in the PRNP gene yield variants that confer different susceptibilities to disease needs to be clarified. We report here the 2.5-A-resolution crystal structures of three scrapie-susceptibility ovine PrP variants complexed with an antibody that binds to PrPC and to PrPSc; they identify two important features of the PrPC-->PrPSc conversion. First, the epitope of the antibody mainly consists of the last two turns of ovine PrP second alpha-helix. We show that this is a structural invariant in the PrPC-->PrPSc conversion; taken together with biochemical data, this leads to a model of the conformational change in which the two PrPC C-terminal alpha-helices are conserved in PrPSc, whereas secondary structure changes are located in the N-terminal alpha-helix. Second, comparison of the structures of scrapie-sensitivity variants defines local changes in distant parts of the protein that account for the observed differences of PrPC stability, resistant variants being destabilized compared with sensitive ones. Additive contributions of these sensitivity-modulating mutations to resistance suggest a possible causal relationship between scrapie resistance and lowered stability of the PrP protein.


Subject(s)
Epitopes/immunology , PrPC Proteins/chemistry , PrPC Proteins/immunology , PrPSc Proteins/chemistry , PrPSc Proteins/immunology , Scrapie/immunology , Animals , Antibody Specificity , Antigen-Antibody Reactions , Crystallography , Mice , Mutation , PrPC Proteins/genetics , PrPSc Proteins/genetics , Protein Structure, Secondary , Protein Structure, Tertiary , Sheep
17.
Protein Sci ; 13(4): 1100-7, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15010548

ABSTRACT

The prion protein occurs as a globular domain and a leading fragment whose structure is not well-defined. For the ovine species, all of the tryptophan residues are in the initial fragment, while the globular domain is rich in tyrosine residues. Using heme as a spectroscopic probe, we have studied the recombinant prion protein before and after a temperature-induced conformational change. As for most heme proteins, the absorption spectrum of heme-CO displays a red shift upon binding to the protein, and both the Y and W fluorescence are highly quenched. Flash photolysis kinetics of the PrP-heme-CO complex shows a low yield for the bimolecular phase, indicating a pocket around the hemes. By comparing the holoprotein and the truncated sequence corresponding to the globular domain, the stoichiometry was determined to be five hemes for the globular domain and two hemes for the leading fragment. At high temperature, the hemes are released; upon cooling, only two hemes bind, and only the tryptophan fluorescence is quenched; this would indicate that the globular domain has formed a more compact structure, which is inert with respect to the hydrophobic probe. The final state of polymerization is perturbed if the synthetic peptide "N3" (PrP residues 142-166, which include the first helix) is added to the prion protein solution; the temperature cycle no longer reduces the number of heme binding sites. This would indicate that the peptide may alter or inhibit the polymer formation.


Subject(s)
Fluorescent Dyes , Heme , Peptides/chemistry , Prions/chemistry , Animals , Carbon Monoxide/metabolism , Prions/genetics , Prions/metabolism , Protein Binding , Protein Structure, Tertiary/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sheep , Spectrometry, Fluorescence , Temperature , Tryptophan/chemistry , Tyrosine/chemistry
18.
Biochem Biophys Res Commun ; 305(3): 518-22, 2003 Jun 06.
Article in English | MEDLINE | ID: mdl-12763023

ABSTRACT

The cellular prion protein (PrP(c)) forms complexes with plasminogen. Here, we show that the PrP(c) in this complex is cleaved to yield fragments of PrP(c). The cleavage is accelerated by plasmin but does not appear to be dependent on it.


Subject(s)
Plasminogen/metabolism , PrPC Proteins/metabolism , Animals , Electrophoresis, Polyacrylamide Gel , Fibrinolysin/metabolism , Humans , Macromolecular Substances , Peptide Fragments/metabolism , Sheep , Tissue Plasminogen Activator/metabolism
19.
J Mol Biol ; 322(4): 799-814, 2002 Sep 27.
Article in English | MEDLINE | ID: mdl-12270715

ABSTRACT

Sheep is a unique example among mammalian species to present a strong correlation between genotype and prion disease susceptibility phenotype. Indeed a well-defined set of PrP polymorphisms at positions 136, 154 and 171 (sheep numbering) govern scrapie susceptibility, ranging from very high susceptibility for V136-R154-Q171 variant (VRQ) to resistance for A136-R154-R171 variant (ARR). To get better insight into the molecular mechanisms of scrapie susceptibility/resistance, the unfolding pathways of the different full-length recombinant sheep prion protein variants were analysed by differential scanning calorimetry in a wide range of pH. In the pH range 4.5-6.0, thermal unfolding occurs through a reversible one-step process while at pH <4.5 and >6.0 unfolding intermediates are formed, which are stable in the temperature range 65-80 degrees C. While these general behaviours are shared by all variants, VRQ and ARQ (susceptibility variants) show higher thermal stability than AHQ and ARR (resistance variants) and the formation of their unfolding intermediates requires higher activation energy than in the case of AHQ and ARR. Furthermore, secondary structures of the unfolding intermediates differentiate variants: ARR unfolding intermediate exhibits random coil structure, contrasting with the beta-sheet structure of VRQ and ARQ unfolding intermediates. The rate of the unfolding intermediate formation allows us to classify genetic variants along increasing scrapie susceptibility at pH 4.0, VRQ and ARQ rates being the highest. Rather poor correlation is observed at pH 7.2. Upon cooling, these intermediates refold into stable species, which are rich in beta-type secondary structures and, as revealed by thioflavin T fluorescence and electron microscopy, share amyloid characteristics. These results highlight the prion protein plasticity genetically modulated in sheep, and might provide a molecular basis for sheep predisposition to scrapie taking into account both thermodynamic stability and transconformation rate of prion protein.


Subject(s)
Prions/chemistry , Protein Folding , Amyloid , Animals , Cattle , Genetic Variation , Hydrogen-Ion Concentration , Kinetics , Prions/genetics , Protein Structure, Quaternary , Protein Structure, Secondary , Sheep , Temperature
20.
J Gen Virol ; 81(Pt 12): 3115-3126, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11086143

ABSTRACT

The immune system is known to be involved in the early phase of scrapie pathogenesis. However, the infection route of naturally occurring scrapie and its spread within the host are not entirely known. In this study, the pathogenesis of scrapie was investigated in sheep of three PrP genotypes, from 2 to 9 months of age, which were born and raised together in a naturally scrapie-affected Romanov flock. The kinetics of PrP(Sc) accumulation in sheep organs were determined by immunohistochemistry. PrP(Sc) was detected only in susceptible VRQ/VRQ sheep, from 2 months of age, with an apparent entry site at the ileal Peyer's patch as well as its draining mesenteric lymph node. At the cellular level, PrP(Sc) deposits were associated with CD68-positive cells of the dome area and B follicles before being detected in follicular dendritic cells. In 3- to 6-month-old sheep, PrP(Sc) was detected in most of the gut-associated lymphoid tissues (GALT) and to a lesser extent in more systemic lymphoid formations such as the spleen or the mediastinal lymph node. All secondary lymphoid organs showed a similar intensity of PrP(Sc)-immunolabelling at 9 months of age. At this time-point, PrP(Sc) was also detected in the autonomic myenteric nervous plexus and in the nucleus parasympathicus nervi X of the brain stem. These data suggest that natural scrapie infection occurs by the oral route via infection of the Peyer's patches followed by replication in the GALT. It may then spread to the central nervous system through the autonomic nervous fibres innervating the digestive tract.


Subject(s)
Digestive System/metabolism , Lymphoid Tissue/metabolism , Nervous System/metabolism , PrPSc Proteins/metabolism , Scrapie/metabolism , Sheep/metabolism , Aging , Animals , Digestive System/immunology , Genetic Predisposition to Disease/genetics , Genotype , Immunohistochemistry , PrPSc Proteins/analysis , Scrapie/pathology , Sheep/genetics , Time Factors
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