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1.
Polymers (Basel) ; 16(10)2024 May 09.
Article in English | MEDLINE | ID: mdl-38794526

ABSTRACT

In this paper, the solid-state shear milling (S3M) strategy featuring a very strong three-dimensional shear stress field was adopted to prepare the high-performance polyoxymethylene (POM)/molybdenum disulfide (MoS2) functional nanocomposite. The transmission electron microscope and Raman measurement results confirmed that the bulk MoS2 particle was successfully exfoliated into few-layer MoS2 nanoplatelets by the above simple S3M physical method. The polarized optical microscope (PLM) observation indicated the pan-milled nanoscale MoS2 particles presented a better dispersion performance in the POM matrix. The results of the tribological test indicated that the incorporation of MoS2 could substantially improve the wear resistance performance of POM. Moreover, the pan-milled exfoliated MoS2 nanosheets could further substantially decrease the friction coefficient of POM. Scanning electron microscope observations on the worn scar revealed the tribological mechanism of the POM/MoS2 nanocomposite prepared by solid-state shear milling. The tensile test results showed that the pan-milled POM/MoS2 nanocomposite has much higher elongation at break than the conventionally melt-compounded material. The solid-state shear milling strategy shows a promising prospect in the preparation of functional nanocomposite with excellent comprehensive performance at a large scale.

2.
Article in English | MEDLINE | ID: mdl-38557612

ABSTRACT

Chronic ankle instability (CAI) is a major public health concern and adversely affects people's mobility and quality of life. Traditional assessment methods are subjective and qualitative by means of clinician observation and patient self-reporting, which may lead to inaccurate assessment and reduce the effectiveness of treatment in clinical practice. Gait analysis becomes a commonly used approach for monitoring human motion behaviors, which can be applied to specific diagnosis and assessment of CAI. However, it is still challenging to recognize the pathological gait pattern for CAI subjects. In this paper, we propose an integrated deep learning framework to solve the CAI recognition problem using kinematic data. Specifically, inspired by the biomechanics of human body system, we create a simple graph neural network (GNN), termed GaitNet, that operates on a spatial domain and exploits interactions among 3-D joint coordinates. We also develop an attention reinforcement learning (ARL) model that determines attention weights of frames on a temporal domain, which is combined with GaitNet for prediction. The effectiveness of our method is validated on the kinematic NEU-CAI dataset which is collected in our institution using a stereophotogrammetric system. According to extensive experiments, we demonstrate that the selected key phases (i.e., sequences of frames with high attentions) significantly increase the predictability of the proposed biomechanics-based GNN model to differentiate between CAI cohort and control cohort. Moreover, we show a significant prediction accuracy improvement (20%-25%) by our approach compared to state-of-the-art machine learning and deep learning methods.

3.
Sci Total Environ ; 922: 171269, 2024 Apr 20.
Article in English | MEDLINE | ID: mdl-38423323

ABSTRACT

Soil biogeochemical cycles are essential for regulating ecosystem functions and services. However, little knowledge has been revealed on microbe-driven biogeochemical processes and their coupling mechanisms in soil profiles. This study investigated the vertical distribution of soil functional composition and their contribution to carbon (C), nitrogen (N) and phosphorus (P) cycling in the humus horizons (A-horizons) and parent material horizons (C-horizons) in Udic and Ustic Isohumosols using shotgun sequencing. Results showed that the diversity and relative abundance of microbial functional genes was influenced by soil horizons and soil types. In A-horizons, the relative abundances of N mineralization and liable C decomposition genes were significantly greater, but the P cycle-related genes, recalcitrant C decomposition and denitrification genes were lower compared to C-horizons. While, Ustic Isohumosols had lower relative abundances of C decomposition genes but higher relative abundances of N mineralization and P cycling-related pathways compared to Udic Isohumosols. The network analysis revealed that C-horizons had more interactions and stronger stability of functional gene networks than in A-horizons. Importantly, our results provide new insights into the potential mechanisms for the coupling processes of soil biogeochemical cycles among C, N and P, which is mediated by specific microbial taxa. Soil pH and carbon quality index (CQI) were two sensitive indicators for regulating the relative abundances and the relationships of functional genes in biogeochemical cycles. This study contributes to a deeper understanding of the ecological functions of soil microorganisms, thus providing a theoretical basis for the exploration and utilization of soil microbial resources and the development of soil ecological control strategies.


Subject(s)
Ecosystem , Soil , Soil/chemistry , Soil Microbiology , Nitrogen/analysis , Carbon/metabolism , Phosphorus/metabolism , Hydrogen-Ion Concentration
4.
ISME J ; 17(11): 1872-1883, 2023 11.
Article in English | MEDLINE | ID: mdl-37607984

ABSTRACT

The microbiome function responses to land use change are important for the long-term prediction and management of soil ecological functions under human influence. However, it has remains uncertain how the biogeographic patterns of soil functional composition change when transitioning from natural steppe soils (NS) to agricultural soils (AS). We collected soil samples from adjacent pairs of AS and NS across 900 km of Mollisol areas in northeast China, and the soil functional composition was characterized using shotgun sequencing. AS had higher functional alpha-diversity indices with respect to KO trait richness and a higher Shannon index than NS. The distance-decay slopes of functional gene composition were steeper in AS than in NS along both spatial and environmental gradients. Land-use conversion from steppe to farmland diversified functional gene profiles both locally and spatially; it increased the abundances of functional genes related to labile carbon, but decreased those related to recalcitrant substrate mobilization (e.g., lignin), P cycling, and S cycling. The composition of gene functional traits was strongly driven by stochastic processes, while the degree of stochasticity was higher in NS than in AS, as revealed by the neutral community model and normalized stochasticity ratio analysis. Alpha-diversity of core functional genes was strongly related to multi-nutrient cycling in AS, suggesting a key relationship to soil fertility. The results of this study challenge the paradigm that the conversion of natural to agricultural habitat will homogenize soil properties and biology while reducing local and regional gene functional diversity.


Subject(s)
Microbiota , Soil , Humans , Soil Microbiology , Agriculture , China , Crops, Agricultural
5.
Viruses ; 15(5)2023 04 27.
Article in English | MEDLINE | ID: mdl-37243155

ABSTRACT

Upon viral entry, components of ND10 nuclear bodies converge with incoming DNA to repress viral expression. The infected cell protein 0 (ICP0) of herpes simplex virus 1 (HSV-1) contains a RING-type E3 ubiquitin ligase that targets the ND10 organizer, PML, for proteasomal degradation. Consequently, ND10 components are dispersed and viral genes are activated. Previously, we reported that ICP0 E3 differentiates two similar substrates, PML isoforms I and II, and demonstrated that SUMO-interaction has profound regulatory effects on PML II degradation. In the present study, we investigated elements that regulate the PML I degradation and found that: (i) two regions of ICP0 flanking the RING redundantly facilitate the degradation of PML I; (ii) downstream of the RING, the SUMO-interaction motif located at residues 362-364 (SIM362-364) targets the SUMOylated PML I in the same manner as that of PML II; (iii) upstream of the RING, the N-terminal residues 1-83 mediate PML I degradation regardless of its SUMOylation status or subcellular localization; (iv) the reposition of residues 1-83 to downstream of the RING does not affect its function in PML I degradation; and (v) the deletion of 1-83 allows the resurgence of PML I and reformation of ND10-like structures late in HSV-1 infection. Taken together, we identified a novel substrate recognition specific for PML I, by which ICP0 E3 enforces a continuous PML I degradation throughout the infection to prevent the ND10 reformation.


Subject(s)
Herpesvirus 1, Human , Immediate-Early Proteins , Herpesvirus 1, Human/physiology , Ubiquitin-Protein Ligases/metabolism , Promyelocytic Leukemia Protein/genetics , Promyelocytic Leukemia Protein/metabolism , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Transcription Factors/metabolism , Immediate-Early Proteins/genetics , Immediate-Early Proteins/metabolism , Protein Isoforms/genetics , Protein Isoforms/metabolism
6.
J Hazard Mater ; 451: 131097, 2023 06 05.
Article in English | MEDLINE | ID: mdl-36898310

ABSTRACT

Plastic mulching is one of the large contributors to microplastic (MP) accumulation in agricultural landscapes. However, the effects of conventional (PE-MPs) and biodegradable MPs (BMPs) on microbial functional and genomic information encoding nitrogen (N) cycling have yet to be addressed. Here, a soil microcosmic experiment was conducted by adding PE-MPs and BMPs to a Mollisol at dosage of 5% (w/w) followed by incubation for 90 days. The soils and MPs were examined by metagenomics and genome binning methods. The results revealed that BMPs harbored rougher surfaces and induced stronger alterations in microbial functional and taxonomic profiles in the soil and plastisphere than PE-MPs. In comparison to their respective soils, the plastispheres of PE-MPs and BMPs stimulated the processes of N fixation, N degradation and assimilatory nitrate reduction (ANRA) and reduced the gene abundances encoding nitrification and denitrification, in which BMPs induced stronger influences than PE-MPs. Ramlibacter mainly drove the differences in N cycling processes between the soils containing two types of MPs and was further enriched in the BMP plastisphere. Three high-quality genomes were identified as Ramlibacter stains with higher abundances in the plastisphere of BMP than that of PE-MP. These Ramlibacter strains had the metabolic capacities of N fixation, N degradation, ANRA and ammonium transport, which were potentially attributed to their biosynthesis and the accumulation of soil NH4+-N. Taken together, our results highlight the genetic mechanisms of soil N bioavailability in the presence of biodegradable MPs, which have important implications for maintaining sustainable agriculture and controlling microplastic risk.


Subject(s)
Microplastics , Soil , Plastics/toxicity , Metagenomics , Soil Microbiology , Nitrogen
7.
Front Microbiol ; 13: 944373, 2022.
Article in English | MEDLINE | ID: mdl-35958136

ABSTRACT

Comammox, as a newly discovered ammonia oxidizer, urgently needs highly efficient and specific primers to detect its community structure and diversity. In this study, the performance of widely used primer set Ntsp-amoA 162F/359R and newly designed primer sets comamoA F/R, CA377f/C576r, and CB377f/C576r were evaluated, for high-throughput sequencing of comammox amoA genes in natural and arable soils sampled from two locations in the black soil region of northeast China. Results showed that, compared with the primer set comamoA F/R, primers Ntsp-amoA 162F/359R had more advantages in detecting comammox operational taxonomic unit (OTU) numbers, diversity, and community structure. The primer sets CA377f/C576r and CB377f/C576r had an advantage in detecting comammox sequences with low relative abundance. In addition, the results of the phylogenetic tree and the relative abundance of dominant OTUs showed that the comammox in the black soils of northeast China was dominated by Nitrospira Clade B. Furthermore, our study found that long-term land use reduced the alpha diversity of the comammox community, but lead to the convergent evolution of community structure. The Mantel test and canonical correspondence analysis indicated that soil NO3 --N content was the most important factor affecting the community structure of comammox. Our study provided experience accumulation for the selection of comammox primers for high-throughput sequencing in the black soil of northeast China.

8.
J Hazard Mater ; 436: 129218, 2022 08 15.
Article in English | MEDLINE | ID: mdl-35739740

ABSTRACT

Significant soil contamination of microplastics (MPs) by the application of agricultural mulching films has aroused global concern, however, the effects of conventional and biodegradable MPs on the dynamics of soil microbial communities and network patterns have not been sufficiently reported. In this study, we conducted a soil microcosmic experiment by adding low-density polyethylene and biodegradable MPs (PE and BD) into a black soil at the dosages of 0 % (CK), 0.1 % (low-dose, w/w), 1 % (medium-dose, w/w) and 5 % (high-dose, w/w), and soils were sampled on the 15th, 30th, 60th and 90th day of soil incubation for high-throughput sequencing. The results showed that the incubation time was the most influential factor driving the variations in bacterial community structures, and significant effects of MP dosages and types were also detected. With the increase in MP dosage, bacterial diversity markedly increased and decreased at the beginning (D15) and end of sampling day (D90), respectively. Compared to CK, BD induced a larger community dissimilarity than PE and tended to enrich environmentally friendly taxa, while PE likely promoted the growth of hazardous taxa. Moreover, BD simplified interspecies interactions compared to the networks of PE and CK, and Nitrospira was identified as a keystone species in both PE and BD networks. These findings provide new insights into the influences of conventional and biodegradable MPs on the succession patterns of soil bacterial communities, and further studies are needed to explore the soil metabolic potentials affected by the presence of MPs.


Subject(s)
Soil Pollutants , Soil , Bacteria/genetics , Microplastics/toxicity , Plastics , Polyethylene , Soil/chemistry , Soil Microbiology , Soil Pollutants/analysis
9.
Sci Total Environ ; 838(Pt 3): 156413, 2022 Sep 10.
Article in English | MEDLINE | ID: mdl-35660449

ABSTRACT

Long-term continuous cropping of soybean can generate the development of disease-suppressive soils. However, whether the changes in microbial communities, especially for archaea, contribute to controlling soil sickness and improving crop yields remains poorly understood. Here, real-time PCR and high-throughput sequencing were employed to investigate the changes in soil archaeal communities in both bulk and rhizosphere soils under four cropping systems, including the continuous cropping of soybeans for a short-term of 3 and 5 years (CC3 and CC5, respectively) and for a long-term of 13 years (CC13), as well as a soybean-maize rotation for 5 years (CR5). The results showed that CC13 and CR5 significantly increased archaeal abundance, reduced the alpha-diversity of archaeal communities, and changed soil archaeal community structures compared to CC3 and CC5. Microbial co-occurrence network analysis revealed that CC13 led to the higher resistant microbial community and lower the relative abundance of potential plant pathogens in the network compared to CC3 and CC5. Correlation analysis showed that the microbial resistance index was negatively correlated with the relative abundance of potential plant pathogens and positively correlated with soybean yields in both bulk and rhizosphere soils. Intriguingly, the random forest (RF) analysis showed that archaea contributed the most to soil microbial resistance even though they were not at the core positions of the network. Overall, structural equation models (SEMs) revealed that high resistant microbial community could directly or indirectly improved soybean yields by regulating the relative abundance of plant pathogens and the soil nutrients, suggesting that the regulation of soil microbial taxa may play an important role in maintaining agricultural productivity under continuous cropping of soybean.


Subject(s)
Archaea , Microbiota , Rhizosphere , Soil/chemistry , Soil Microbiology , Glycine max
10.
Annu Int Conf IEEE Eng Med Biol Soc ; 2021: 1690-1693, 2021 11.
Article in English | MEDLINE | ID: mdl-34891611

ABSTRACT

Efficient real-time detection of epileptic seizures remains a challenging task in clinical practice. In this study, we introduce a new thresholding method to monitor brain activities via a non-uniform multivariate (NUM) embedding of multi-channel electroencephalogram (EEG) signals. Specifically, we present a NUM embedding optimization problem to identify the best embedding parameters. We originate one feature, named non-uniform multivariate multiscale entropy (NUMME), which is extracted from the NUM embedded EEG data. Finally, the extracted feature, compared to an individualized threshold, is used for monitoring and detecting seizure onsets. Experimental results on the real CHB-MIT Scalp EEG database show that our approach achieves a comparable performance to the state-of-art methods. Moreover, it is important to note that we accomplish this without using any sophisticated machine learning algorithms.


Subject(s)
Epilepsy , Signal Processing, Computer-Assisted , Algorithms , Electroencephalography , Epilepsy/diagnosis , Humans , Seizures/diagnosis
11.
Viruses ; 13(2)2021 02 03.
Article in English | MEDLINE | ID: mdl-33546431

ABSTRACT

Nuclear domains 10 (ND10), a.k.a. promyelocytic leukemia nuclear bodies (PML-NBs), are membraneless subnuclear domains that are highly dynamic in their protein composition in response to cellular cues. They are known to be involved in many key cellular processes including DNA damage response, transcription regulation, apoptosis, oncogenesis, and antiviral defenses. The diversity and dynamics of ND10 residents enable them to play seemingly opposite roles under different physiological conditions. Although the molecular mechanisms are not completely clear, the pro- and anti-cancer effects of ND10 have been well established in tumorigenesis. However, in herpesvirus research, until the recently emerged evidence of pro-viral contributions, ND10 nuclear bodies have been generally recognized as part of the intrinsic antiviral defenses that converge to the incoming viral DNA to inhibit the viral gene expression. In this review, we evaluate the newly discovered pro-infection influences of ND10 in various human herpesviruses and analyze their molecular foundation along with the traditional antiviral functions of ND10. We hope to shed light on the explicit role of ND10 in both the lytic and latent cycles of herpesvirus infection, which is imperative to the delineation of herpes pathogenesis and the development of prophylactic/therapeutic treatments for herpetic diseases.


Subject(s)
Herpes Simplex/metabolism , Herpesviridae/physiology , Nuclear Proteins/metabolism , Carcinogenesis , Herpes Simplex/virology , Herpesviridae/classification , Herpesviridae/metabolism , Host-Pathogen Interactions , Humans , Viral Proteins/metabolism , Virus Latency , Virus Replication
12.
Int J Mol Sci ; 21(11)2020 Jun 08.
Article in English | MEDLINE | ID: mdl-32521668

ABSTRACT

Ubiquitination is a prominent posttranslational modification, in which the ubiquitin moiety is covalently attached to a target protein to influence protein stability, interaction partner and biological function. All seven lysine residues of ubiquitin, along with the N-terminal methionine, can each serve as a substrate for further ubiquitination, which effectuates a diverse combination of mono- or poly-ubiquitinated proteins with linear or branched ubiquitin chains. The intricately composed ubiquitin codes are then recognized by a large variety of ubiquitin binding domain (UBD)-containing proteins to participate in the regulation of various pathways to modulate the cell behavior. Viruses, as obligate parasites, involve many aspects of the cell pathways to overcome host defenses and subjugate cellular machineries. In the virus-host interactions, both the virus and the host tap into the rich source of versatile ubiquitination code in order to compete, combat, and co-evolve. Here, we review the recent literature to discuss the role of ubiquitin system as the infection progresses in virus life cycle and the importance of ubiquitin specificity in the regulation of virus-host relation.


Subject(s)
Host-Pathogen Interactions , Ubiquitin/metabolism , Virus Diseases/metabolism , Virus Diseases/virology , Virus Physiological Phenomena , Animals , Biomarkers , Humans , Ubiquitin/genetics , Ubiquitination , Virus Replication
13.
J Virol ; 94(12)2020 06 01.
Article in English | MEDLINE | ID: mdl-32295906

ABSTRACT

ND10 nuclear bodies, as part of the intrinsic defenses, impose repression on incoming DNA. Infected cell protein 0 (ICP0), an E3 ubiquitin ligase of herpes simplex virus 1 (HSV-1), can derepress viral genes by degrading ND10 organizers to disrupt ND10. These events are part of the initial tug of war between HSV-1 and host, which determines the ultimate outcome of infection. Previously, we reported that ICP0 differentially recognizes promyelocytic leukemia (PML) isoforms. ICP0 depends on a SUMO-interaction motif located at residues 362 to 364 (SIM362-364) to trigger the degradation of PML isoforms II, IV, and VI, while using a bipartite sequence flanking the RING domain to degrade PML I. In this study, we investigated how the SUMO-SIM interaction regulates the degradation of PML II and PML II-associated proteins in ND10. We found that (i) the same regulatory mechanism for PML II degradation was detected in cells permissive or nonpermissive to the ICP0-null virus; (ii) the loss of a single SIM362-364 motif was restored by the presence of four consecutive SIMs from RNF4, but was not rescued by only two of the RNF4 SIMs; (iii) the loss of three C-terminal SIMs of ICP0 was fully restored by four RNF4 SIMs and also partially rescued by two RNF4 SIMs; and (iv) a PML II mutant lacking both lysine SUMOylation and SIM was not recognized by ICP0 for degradation, but was localized to ND10 and mitigated the degradation of other ND10 components, leading to delayed viral production. Taken together, SUMO regulates ICP0 substrate recognition via multiple fine-tuned mechanisms in HSV-1 infection.IMPORTANCE HSV-1 ICP0 is a multifunctional immediate early protein key to effective replication in the HSV-1 lytic cycle and reactivation in the latent cycle. ICP0 transactivates gene expression by orchestrating an overall mitigation in host intrinsic/innate restrictions. How ICP0 coordinates its multiple active domains and its diverse protein-protein interactions is a key question in understanding the HSV-1 life cycle and pathogenesis. The present study focuses on delineating the regulatory effects of the SUMO-SIM interaction on ICP0 E3 ubiquitin ligase activity regarding PML II degradation. For the first time, we discovered the importance of multivalency in the PML II-ICP0 interaction network and report the involvement of different regulatory mechanisms in PML II recognition by ICP0 in HSV-1 infection.


Subject(s)
Herpesvirus 1, Human/immunology , Host-Pathogen Interactions/immunology , Immediate-Early Proteins/immunology , Nuclear Proteins/immunology , Promyelocytic Leukemia Protein/immunology , Protein Processing, Post-Translational , Transcription Factors/immunology , Ubiquitin-Protein Ligases/immunology , Cell Line, Tumor , Epithelial Cells/immunology , Epithelial Cells/virology , Gene Expression Regulation , Herpesvirus 1, Human/genetics , Host-Pathogen Interactions/genetics , Humans , Immediate-Early Proteins/genetics , Mutation , Nuclear Proteins/genetics , Promyelocytic Leukemia Protein/genetics , Protein Binding , Protein Isoforms/genetics , Protein Isoforms/immunology , Proteolysis , Signal Transduction , Sumoylation , Transcription Factors/genetics , Ubiquitin-Protein Ligases/genetics
14.
J Vis Exp ; (141)2018 11 04.
Article in English | MEDLINE | ID: mdl-30451237

ABSTRACT

Infected cell protein 0 (ICP0) of herpes simplex virus 1 (HSV-1) is an immediate early protein containing a RING-type E3 ubiquitin ligase. It is responsible for the proteasomal degradation of host restrictive factors and the subsequent viral gene activation. ICP0 contains a canonical nuclear localization sequence (NLS). It enters the nucleus immediately after de novo synthesis and executes its anti-host defense functions mainly in the nucleus. However, later in infection, ICP0 is found solely in the cytoplasm, suggesting the occurrence of a nuclear-to-cytoplasmic translocation during HSV-1 infection. Presumably ICP0 translocation enables ICP0 to modulate its functions according to its subcellular locations at different infection phases. In order to delineate the biological function and regulatory mechanism of ICP0 nuclear-to-cytoplasmic translocation, we modified an immunofluorescent microscopy method to monitor ICP0 trafficking during HSV-1 infection. This protocol involves immunofluorescent staining, confocal microscope imaging, and nuclear vs. cytoplasmic distribution analysis. The goal of this protocol is to adapt the steady state confocal images taken in a time course into a quantitative documentation of ICP0 movement throughout the lytic infection. We propose that this method can be generalized to quantitatively analyze nuclear vs. cytoplasmic localization of other viral or cellular proteins without involving live imaging technology.


Subject(s)
Herpesvirus 1, Human/genetics , Microscopy, Confocal/methods , Protein Transport/genetics , Humans
15.
J Chromatogr A ; 1575: 1-10, 2018 Nov 09.
Article in English | MEDLINE | ID: mdl-30228009

ABSTRACT

A magnetic nano-adsorbent material was prepared by functionalizing carboxylic group onto the granule surface of magnetic graphene oxide nanoparticles (CMGO), using in-situ co-precipitating method. The surface morphology was characterized by SEM and TEM. The CMGO was selected as the adsorbent for the magnetic solid phase extraction (MSPE) of sulfonamides (SAs) from environmental water samples, and the eluted analytes were determined by ultra high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS). A series of experimental parameters were optimized to improve the extraction efficiency such as amount of CMGO, extraction time, pH, ionic strength of the sample solution and desorption conditions. When the pH of water sample was 4.00, the extraction recoveries (ERs) for SAs were over 82.0% with 15.0 mg CMGO adsorption for 20 min. Under the optimized extraction conditions, linear range was obtained with coefficients of determination (R2)≥0.9983. The limits of detection for this proposed method were in the range of 0.49-1.59 ng/L, and the enrichment factors were 1320-1702 for eight SAs. The newly developed method was successfully applied to the analysis of trace SAs in real-world water samples, which provided satisfactory ERs in the range of 82.0-106.2% with RSDs less than 7.2%. Overall, it shows a great potential for the concentration of trace amine organic pollutions in complex matrices.


Subject(s)
Environmental Monitoring/methods , Graphite/chemistry , Nanoparticles/chemistry , Oxides/chemistry , Solid Phase Extraction , Sulfonamides/isolation & purification , Water/chemistry , Adsorption , Chromatography, High Pressure Liquid , Limit of Detection , Magnetics , Sulfonamides/analysis , Tandem Mass Spectrometry , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/isolation & purification
16.
Ecotoxicol Environ Saf ; 164: 243-252, 2018 Nov 30.
Article in English | MEDLINE | ID: mdl-30121499

ABSTRACT

ß-Diketone antibiotics (DKAs) are widely used in human and veterinary medicine to prevent and treat a large variety of infectious diseases. Long-term DKA exposure to zebrafish can result in lipid metabolism disorders and liver function abnormalities. Based on our previous miRNA-seq analyses, miR-144 and miR-125b were identified as target genes regulating lipid metabolism. DKA-exposure at 12.5 and 25 mg/L significantly increased the expressions of miR-144 and miR-125b. The expression levels for the two miRNAs exhibited an inverse relationship with their lipid-metabolism-related target genes (ppardb, bcl2a, pparaa and pparda). Over-expression and inhibition of miR-144 and miR-125b were observed by micro-injection of agomir-144, agomir-125b, antagomir-144 and antagomir-125b. The over-expression of miR-144 and miR-125b enhanced lipid accumulation and further induced lipid-metabolism-disorder syndrome in F1-zebrafish. The expression of ppardb and bcl2a in whole-mount in situ hybridization was in general agreement with results from qRT-PCR and was concentration-dependent. Oil red O and H&E staining, as well as related physiological and biochemical indexes, showed that chronic DKA exposure resulted in lipid-metabolism-disorder in F0-adults, and in F1-larvae fat accumulation, increased lipid content, abnormal liver function and obesity. The abnormal levels of triglyceride (TG) and total cholesterol (TCH) in DKA-exposed zebrafish increased the risk of hyperlipidemia, atherosclerosis and coronary heart disease. These observations improve our understanding of mechanisms leading to liver disease from exposure to environmental pollution, thereby having relevant practical significance in health prevention, early intervention, and gene therapy for drug-induced diseases.


Subject(s)
Anti-Bacterial Agents/toxicity , Lipid Metabolism/drug effects , MicroRNAs/genetics , Zebrafish/genetics , Animals , Atherosclerosis/chemically induced , Atherosclerosis/pathology , Chlortetracycline/toxicity , Cholesterol/blood , Ciprofloxacin/toxicity , Computational Biology , Disease Models, Animal , Doxycycline/toxicity , Enrofloxacin/toxicity , Female , Hyperlipidemias/chemically induced , Hyperlipidemias/pathology , Larva/drug effects , Larva/metabolism , Male , MicroRNAs/metabolism , Ofloxacin/toxicity , Oxytetracycline/toxicity , Peroxisome Proliferator-Activated Receptors/genetics , Peroxisome Proliferator-Activated Receptors/metabolism , Triglycerides/blood , Up-Regulation , Zebrafish/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
17.
Huan Jing Ke Xue ; 39(4): 1544-1551, 2018 Apr 08.
Article in Chinese | MEDLINE | ID: mdl-29964979

ABSTRACT

Eight polybrominated diphenyl ether (PBDE) congeners in indoor and outdoor air particles were collected using higher-volume active sampling techniques from different functional areas, including an industrial workplace, office, domestic area, and scenic area in an industrial zone, in Suzhou city, and the samples were analyzed by GC-MS. The total concentration of PBDEs ranged from 9.22-64.15 pg·m-3 (average 20.93 pg·m-3), and 1.06-8.44 pg·m-3(average 5.11 pg·m-3)in indoor and outdoor air, respectively. The results showed that the concentrations of PBDEs in indoor PM10 was significantly higher than that in the outdoor PM10. The average concentrations of PBDEs in the air of the different sampling areas were in the order:industrial workplace

Subject(s)
Air Pollutants/analysis , Air Pollution, Indoor/analysis , Environmental Monitoring , Halogenated Diphenyl Ethers/analysis , China , Dust , Humans , Inhalation Exposure
18.
Huan Jing Ke Xue ; 39(5): 2230-2238, 2018 May 08.
Article in Chinese | MEDLINE | ID: mdl-29965523

ABSTRACT

Sewage water, the influent of the secondary sedimentation tanks, the final effluent, sludge from biological pools, and dewatered excess sludge samples from eight wastewater treatment plants (WWPTs) in Suzhou, including those from seven A2/O processes and one oxidation ditch process, were collected in 2017 to study the pollution characteristics of organophosphorus flame retardants (OPFRs) in WWPTs. Accelerated solvent extraction (ASE) combined with a solid-phase extraction method was used to detect the concentration of 10 organic phosphorus flame retardant (OPFRs). The removal efficiency of OPFRs was compared and final daily emissions were estimated. The results showed seven kinds of OPFRs were detected in the influent, final effluent, and sludge. The total content of OPFRs in the influent ranged from 0.74 to 222.65 µg ·L-1 (average 65.56 µg ·L-1), while the content in the final effluent was between 0.46 and 175.41 µg ·L-1 (average 22.99 µg ·L-1). The concentration in the effluent of the secondary sedimentation tank was between 0.48 and 178.14 µg ·L-1 (average 43.14 µg ·L-1). The daily emission of OPFRs in final effluent was 36.69-2177.12 g ·d-1. The content in the dewatered excess sludge was between 89.32 and 596.24 µg ·g-1 dw (average 249.35 µg ·g-1 dw), the minimum daily emission was 3.57-7.15 kg ·d-1, and the maximum was 47.70-95.40 kg ·d-1. The oxidation ditch process has a good removal rate of OPFRs, at 92%, while the A2/O process removal rate covered a large range from 11%-99%. Three chlorinated OPFRs, TCEP, TCPP, and TDCPP, were the main components in the influent and final effluent, mainly because of the large consumption of OPFRs and also because the removal rate by the traditional wastewater treatment technology was low.

19.
Ultrason Sonochem ; 47: 57-67, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29908607

ABSTRACT

A microextraction method was developed based on utilization of a novel ionic liquid (IL) [C4MIM][NCA] as disperser and conventional ILs as extractor (IL-IL-DLLME). This method was integrated with an in-situ metathesis reaction to achieve high extraction efficiency by eliminating the loss of analytes in the discarded disperser after microextraction. Ultrasonic energy was compared to traditional mechanical shaking to accelerate the in-situ metathesis reaction. A 3-min ultrasonic treatment provided similar extraction efficiency as a 120-min mechanical shaking. Due to their strong acidity and lower solubility than traditional hydrophilic ILs, utilization of [C4MIM][NCA] in the IL-IL-DLLME procedure increased extraction recoveries (ERs) for triclosan (TCS) and methyltriclosan (MTCS) by 10-12% and also avoided an extra pH adjustment step. A series of operational parameters were optimized using single-factor screening and central composite design as follows: 65 µL extraction solvent, 150 µL [C4MIM][BF4] and [C4MIM][NCA] (132/18, v/v, µL) as dispersive solvent, 0.16 g NH4PF6 and 3.3 min ultrasonic time. Under optimized conditions with a fortification of 100 µg kg-1, ERs were 92.6-93.4% for TCS and 92.7-94.2% for MTCS in bovine milk and chicken egg samples. LODs for TCS and MTCS were 0.16-0.24 µg kg-1 and the enrichment factors were 21.8-23.1. Inter- and intra-day precisions had relative standard deviations of 3.3-5.4% for the optimized method. Overall, this newly developed IL-IL-DLLME method was effective for detecting trace levels of TCS and MTCS in real-world, animal-based foods. Prominent advantages of the new method include high precision and accuracy, high extraction efficiency, simple analytical operations, and no use of organic solvents making the procedure environmentally benign.


Subject(s)
Carboxylic Acids/chemistry , Eggs/analysis , Ionic Liquids , Milk/chemistry , Naphthalenes/chemistry , Sonication , Triclosan/analogs & derivatives , Triclosan/chemistry , Animals , Anti-Infective Agents, Local , Chromatography, High Pressure Liquid , Hydrogen-Ion Concentration , Kinetics , Limit of Detection , Reference Standards , Reproducibility of Results , Spectrophotometry, Ultraviolet
20.
J Virol ; 92(2)2018 01 15.
Article in English | MEDLINE | ID: mdl-29093084

ABSTRACT

Infected cell protein 0 (ICP0) of herpes simplex virus 1 (HSV-1) is an immediate early protein containing a RING-type E3 ubiquitin ligase. It targets several host factors for proteasomal degradation and subsequently activates viral expression. ICP0 has a nuclear localization sequence and functions in the nucleus early during infection. However, later in infection, ICP0 is found solely in the cytoplasm. The molecular mechanism and biological function of the ICP0 nuclear-to-cytoplasmic translocation are not well understood. In this study, we sought to characterize elements important for this translocation. We found that (i) in human embryonic lung fibroblast (HEL) cells, ICP0 C-terminal residues 741 to 775 were necessary but not sufficient for the nuclear-to-cytoplasmic translocation; (ii) the loss of ICP0 E3 ubiquitin ligase activity, which led to defective viral replication in nonpermissive cells, also caused mutant ICP0 to be retained in the nucleus of HEL cells; (iii) in permissive U2OS cells, however, ICP0 lacking E3 ligase activity was translocated to the cytoplasm at a pace faster than that of wild-type ICP0, suggesting that nuclear retention of ICP0 occurs in an ICP0 E3 ligase-dependent manner; and (iv) the ICP0 C terminus and late viral proteins cooperate in order to overcome nuclear retention and stimulate ICP0 cytoplasmic translocation. Taken together, less ICP0 nuclear retention may contribute to the permissiveness of U2OS cells to HSV-1 in the absence of functional ICP0.IMPORTANCE A distinct characteristic for eukaryotes is the compartmentalization of cell metabolic pathways, which allows greater efficiency and specificity of cellular functions. ICP0 of HSV-1 is a multifunctional viral protein that travels through different compartments as infection progresses. Its main regulatory functions are carried out in the nucleus, but it is translocated to the cytoplasm late during HSV-1 infection. To understand the biological significance of cytoplasmic ICP0 in HSV-1 infection, we investigated the potential players involved in this nuclear-to-cytoplasmic translocation. We found that there is a nuclear retention force in an ICP0 E3 ubiquitin ligase-dependent manner. In addition, we identified the C terminus of ICP0 as a cis element cooperating with late viral proteins to overcome the nuclear retention and stimulate the nuclear-to-cytoplasmic translocation of ICP0.


Subject(s)
Herpes Simplex/virology , Herpesvirus 1, Human/physiology , Host-Pathogen Interactions , Immediate-Early Proteins/metabolism , Ubiquitin-Protein Ligases/metabolism , Amino Acid Sequence , Cell Line , Cell Nucleus/metabolism , Cytoplasm/metabolism , Gene Expression Regulation, Viral , Humans , Immediate-Early Proteins/chemistry , Immediate-Early Proteins/genetics , Mutation , Protein Binding , Protein Interaction Domains and Motifs , Protein Transport , Ubiquitin-Protein Ligases/chemistry , Ubiquitin-Protein Ligases/genetics
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