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1.
IEEE Trans Image Process ; 33: 2388-2403, 2024.
Article in English | MEDLINE | ID: mdl-38517716

ABSTRACT

This paper investigates a novel unpaired video dehazing framework, which can be a good candidate in practice by relieving pressure from collecting paired data. In such a paradigm, two key issues including 1) temporal consistency uninvolved in single image dehazing, and 2) better dehazing ability need to be considered for satisfied performance. To handle the mentioned problems, we alternatively resort to introducing depth information to construct additional regularization and supervision. Specifically, we attempt to synthesize realistic motions with depth information to improve the effectiveness and applicability of traditional temporal losses, and thus better regularizing the spatiotemporal consistency. Moreover, the depth information is also considered in terms of adversarial learning. For haze removal, the depth information guides the local discriminator to focus on regions where haze residuals are more likely to exist. The dehazing performance is consequently improved by more pertinent guidance from our depth-aware local discriminator. Extensive experiments are conducted to validate our effectiveness and superiority over other competitors. To the best of our knowledge, this study is the initial foray into the task of unpaired video dehazing. Our code is available at https://github.com/YaN9-Y/DUVD.

2.
Exp Eye Res ; 241: 109838, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38395213

ABSTRACT

Limbal niche cells (LNCs) are one of the most important supporting cells for corneal epithelial stem cells (CES), however, research on LNCs has been mostly limited to humans and rats previously. To expand the research work into the rabbit animal model, one of the most often used animals in stem cell study, this study was carried out for the in vitro isolation and identification of rabbit LNCs. Rabbit LNCs were isolated by collagenase A digestion method and single cells were obtained, the cells were then seeded on 5% Matrigel-coated plastic surface and cultured in modified embryonic stem cell medium (MESCM). Three biological replicates of the isolating and characterization were recorded from New Zealand White rabbits aged from 2.5 months to 5 months. LNC markers (VIM/CD90/CD105/SCF/PDGFRß) were analyzed using tyramide signal amplification (TSA) staining, immunohistochemical staining (IHC), western blotting (WB), and real-time reverse transcription polymerase chain reaction (qPCR). TSA staining suggested that VIM was highly expressed in rabbit limbus stroma, which was confirmed by WB, and P63α was expressed in the basal limbus epithelium. Pan-CK and CK12 were highly expressed in the central corneal epithelium but lightly expressed in the limbal epithelium. The WB result indicated that PDGFRß and VIM expressions in rabbit-LNCs P4 were higher than in P1 and P7. In addition, rabbit corneal epithelium highly expressed Paired Box 6 (PAX6) and Epidermal growth factor-like domain 6(EGFL6). For the three repeat experiments, the cell expansion activity of rabbit-LNC was highest at P4. Rabbit-LNCs were passaged from P0 to P7, and the number of cell doublings (NCD) of P4 for the three repeat experiments was 2.816, 2.737, and 2.849. qPCR showed that high mRNA expression levels of VIM, CD90, CD105, SCF, and PDGFRß in rabbit-LNCs P4. In conclusion, rabbit-LNCs could be successfully isolated by the collagenase A digestion method as used in human tissue. There were similar characteristics between rabbit and human LNCs (VIM+/CD90+/CD105+/SCF+/PAX6+/PDGFRß+).


Subject(s)
Epithelium, Corneal , Limbus Corneae , Rabbits , Rats , Humans , Animals , Stem Cells , Cornea , Cells, Cultured , Collagenases , Epithelial Cells , Stem Cell Niche
3.
Pain Physician ; 27(1): E109-E118, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38285043

ABSTRACT

BACKGROUND: Generalized pain is the core symptom of fibromyalgia (FM). Few studies have described FM's different pain characteristics under various conditions. OBJECTIVE: To explore the pain characteristics of patients with FM of different gender and emotional states. STUDY DESIGN: A cross-sectional study. SETTING: A medical center in Beijing, People's Republic of China. METHODS: A total of 197 patients with FM were recruited from an outpatient clinic. Three distinct instruments were used to assess their pain characteristics: the Numeric Rating Scale (NRS-11) to assess pain severity, the Widespread Pain Index (WPI) to assess the number of pain regions, and the Short Form-McGill Pain Questionnaire-2 (SF-MPQ-2) to assess pain qualities. The Zung Self-Rating Anxiety Scale and Zung Self-Rating Depression Scale were used to assess patients' emotional states. An independent 2-sample t test, chi-squared test, and Mann-Whitney U test were used to analyze gender pain characteristics differences and different emotional states (with/without anxiety, with/without depression). RESULTS: Pain severity on the NRS-11 was 7 (5-8), the number of pain regions determined by WPI was 13 (10-16), and the total score of different pain qualities from the SF-MPQ-2 was 2.36 (1.68-3.73) in all patients with FM. The most frequently reported regions of pain were the right shoulder girdle (89.34%), left shoulder girdle (88.32%), upper back (85.28%), and neck (81.73%). The most frequently reported pain qualities were tiredness/exhaustion (97.46%), aching pain (94.42%), numbness (78.68%), cold/freezing pain (75.63%), and tenderness (75.13%). Women patients reported more severe pain and numbness, less frequent chest pain, and shooting pain than men patients did. Patients with FM and anxiety experienced more frequent and more severe feelings of punishing/cruel thoughts, fearfulness, sickening, and tenderness; more frequent jaw pain and cold-freezing pain; more severe pain caused by light touch and tiredness/exhaustion; less frequent lower leg pain than those without anxiety did. Patients with FM and depression reported more frequent and more severe pain caused by light touch; more frequent tenderness; more severe feelings of tiredness/exhaustion, sickening,fearfulness, and punishing/cruel thoughts; and less frequent and less severe piercing pain than those without depression did. LIMITATIONS: The limitations of this study are its single-center design and lack of objective pain indicators. CONCLUSION: Gender significantly affected pain severity, chest pain, numbness, and shooting pain. Jaw pain, lower leg pain, cold/freezing pain, tenderness, pain caused by light touch, piercing pain, and pain-affective descriptors are closely related to emotional states in FM. A comprehensive understanding of pain characteristics in patients with FM would be helpful for disease education, diagnosis, and treatment.


Subject(s)
Fibromyalgia , Male , Humans , Female , Cross-Sectional Studies , Hypesthesia , Anxiety/etiology , Chest Pain
4.
ACS Omega ; 8(42): 39154-39167, 2023 Oct 24.
Article in English | MEDLINE | ID: mdl-37901580

ABSTRACT

The flattening of nanoscale pores is a crucial step in the process of anthracite graphitization, which primarily occurs due to lithostatic pressure or tectonic stress. Anthracite, a highly metamorphosed form of carbonaceous material, is a primary component of artificial graphite, but its availability is limited in China. Therefore, it is necessary to investigate the graphitization of low metamorphic coal. Note that the pores of deformed coal are substantially compressed, and the evolution of macromolecular structure is accelerated owing to strong tectonic extrusion and shearing action. Herein, the feasibility analysis of coal-based graphite at temperatures of 2200 and 2600 °C was investigated using mylonitized meager coal (YA-M; Ro,max = 2.34%), which exhibits the most intense deformation intensity, and it was compared with undeformed coal (YA-U; Ro,max = 1.87%) from the same coal seam. Results indicate that YA-U primarily consists of cylindrical pores with an average pore diameter of 10 nm, while YA-M exhibits extensive fine bottleneck and parallel plate pores with an average pore size of ∼4 nm. Additionally, interlayer spacing decreases from 0.3592 nm in YA-U to 0.3575 nm in YA-M, while crystallite height increases from 1.9633 nm in YA-U to 2.1424 nm in YA-M. The undeformed coal YA-U exhibits short and disordered aromatic fringes with a localized turbostratic structure that hinders graphitization. In contrast, YA-M exhibits more and longer localized fringe pairs arranged in parallel with improved structural ordering, indicating a favorable environment for graphitization. Ductile deformation narrows the pore diameter distribution, causing deformation pores on the mylonitic granules' surface to close, shrink directionally, collapse, or connect, resulting in obvious flattening characteristics of nanoscale. Based on these results, the graphitization degree of the graphitized products YA-GM-2200 and YA-GM-2600 was 80.23% and 88.37%, respectively, with interlayer spacings of 0.3371 and 0.3364 nm, indicating that these products have entered the semigraphite (medium graphitization) and graphite range, respectively. In contrast, the graphitization degree of YA-GU-2200 and YA-GU-2600 was only 51.16% and 56.98%, respectively, indicating that they have only progressed from anthracite to meta-anthracite (the preliminary graphitization stage). These findings confirm the view that the shear stress generated by the geological age flattens the pores of mylonitized meager coal and optimizes the aromatic lattice arrangement and orientation, facilitating graphitization and lowering the graphitization temperature (from 2800 to 2200 °C). Deformed coal is soft and can be easily crushed into powdered form using the human hand, making it less suitable for transportation. Additionally, owing to the unfavorable separation of minerals and lower hydrocarbon-generating potential, deformed coal application potential and price are consistently lower than those of undeformed coal. However, deformed coal is widely distributed in various coal measures in China, making these research findings valuable in promoting the high value-added utilization of low-rank deformed coal resources and expanding the carbon source of coal-based graphite materials.

5.
Article in English | MEDLINE | ID: mdl-37777608

ABSTRACT

The "brain-cognition-behavior" process is an important pathological pathway in children with attention-deficit/hyperactivity disorder (ADHD). Symptom guided multimodal neuroimaging fusion can capture behaviorally relevant and intrinsically linked structural and functional features, which can help to construct a systematic model of the pathology. Analyzing the multimodal neuroimage fusion pattern and exploring how these brain features affect executive function (EF) and leads to behavioral impairment is the focus of this study. Based on gray matter volume (GMV) and fractional amplitude of low frequency fluctuation (fALFF) for 152 ADHD and 102 healthy controls (HC), the total symptom score (TO) was set as a reference to identify co-varying components. Based on the correlation between the identified co-varying components and EF, further mediation analysis was used to explore the relationship between brain image features, EF and clinical symptoms. This study found that the abnormalities of GMV and fALFF in ADHD are mainly located in the default mode network (DMN) and prefrontal-striatal-cerebellar circuits, respectively. GMV in ADHD influences the TO through Metacognition Index, while fALFF in HC mediates the TO through behavior regulation index (BRI). Further analysis revealed that GMV in HC influences fALFF, which further modulates BRI and subsequently affects hyperactivity-impulsivity score. To conclude, structural brain abnormalities in the DMN in ADHD may affect local brain function in the prefrontal-striatal-cerebellar circuit, making it difficult to regulate EF in terms of inhibit, shift, and emotional control, and ultimately leading to hyperactive-impulsive behavior.

6.
J Psychiatr Res ; 166: 17-24, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37660405

ABSTRACT

Previous studies reported that the inferior parietal lobule (IPL) had lower activation during visuospatial attention in children with attention-deficit/hyperactivity disorder (ADHD), while the functional connectivity (FC) between the IPL and other brain regions and how cognitive demand might modulate IPL's FC remain unclear. We performed a functional magnetic resonance imaging experiment recruiting two task conditions with relatively low and high cognitive demand of visuospatial attention. Forty-four children with ADHD and 36 age- and sex-matched healthy controls were included. IPL's regional activation and FC intensities were compared between groups and correlated with clinical measurements. We found that the IPL had significantly reduced activation in children with ADHD compared to healthy controls and this abnormal activation was not modulated by the cognitive demand of visuospatial attention. Importantly, further analysis revealed that the functional connectivity between IPL and inferior frontal gyrus was modulated by the cognitive demand of visuospatial attention in children with ADHD. These results revealed a modulatory effect of cognitive demand of visuospatial attention on IPL's functional connectivity but not IPL's activation in children with ADHD. More generally, these results highlight the functional reorganization of the brain activity as a possible compensatory strategy in response to the symptoms of ADHD.

7.
J Atten Disord ; 27(14): 1638-1649, 2023 12.
Article in English | MEDLINE | ID: mdl-37688472

ABSTRACT

OBJECTIVE: Exploring how abnormal brain function in children with ADHD affects executive function and ultimately leads to behavioral impairment provides a theoretical basis for clinically targeted neurotherapy and cognitive training. METHOD: Amplitude of low frequency fluctuations (ALFF), regional homogeneity (ReHo), and seed-based FC were analyzed in 53 ADHD and 52 healthy controls. The "brain-cognition-behavior" relationship was further explored using mediation analysis. RESULTS: ADHD showed abnormal local activation in the middle temporal gyrus (MTG), inferior occipital gyrus and inferior frontal gyrus (IFG) and reduced FC between the IFG and the cerebellum. ADHD diagnosis may affect ALFF of MTG and further modulate shift and finally affect inattentive symptoms. It may also affect the total symptoms through the FC of the IFG with the cerebellum. CONCLUSION: ADHD showed extensive spontaneous activity abnormalities and frontal-cerebellar FC impairments. Localized functional abnormalities in the MTG may affect the shift in EF, resulting in attention deficit behavior.


Subject(s)
Attention Deficit Disorder with Hyperactivity , Humans , Child , Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Cognition , Executive Function , Brain Mapping/methods
8.
Quant Imaging Med Surg ; 13(5): 2807-2821, 2023 May 01.
Article in English | MEDLINE | ID: mdl-37179932

ABSTRACT

Background: T2* relaxation times in the spinal cartilage endplate (CEP) measured using ultra-short echo time magnetic resonance imaging (UTE MRI) reflect aspects of biochemical composition that influence the CEP's permeability to nutrients. Deficits in CEP composition measured using T2* biomarkers from UTE MRI are associated with more severe intervertebral disc degeneration in patients with chronic low back pain (cLBP). The goal of this study was to develop an objective, accurate, and efficient deep-learning-based method for calculating biomarkers of CEP health using UTE images. Methods: Multi-echo UTE MRI of the lumbar spine was acquired from a prospectively enrolled cross-sectional and consecutive cohort of 83 subjects spanning a wide range of ages and cLBP-related conditions. CEPs from the L4-S1 levels were manually segmented on 6,972 UTE images and used to train neural networks utilizing the u-net architecture. CEP segmentations and mean CEP T2* values derived from manually- and model-generated segmentations were compared using Dice scores, sensitivity, specificity, Bland-Altman, and receiver-operator characteristic (ROC) analysis. Signal-to-noise (SNR) and contrast-to-noise (CNR) ratios were calculated and related to model performance. Results: Compared with manual CEP segmentations, model-generated segmentations achieved sensitives of 0.80-0.91, specificities of 0.99, Dice scores of 0.77-0.85, area under the receiver-operating characteristic curve values of 0.99, and precision-recall (PR) AUC values of 0.56-0.77, depending on spinal level and sagittal image position. Mean CEP T2* values and principal CEP angles derived from the model-predicted segmentations had low bias in an unseen test dataset (T2* bias =0.33±2.37 ms, angle bias =0.36±2.65°). To simulate a hypothetical clinical scenario, the predicted segmentations were used to stratify CEPs into high, medium, and low T2* groups. Group predictions had diagnostic sensitivities of 0.77-0.86 and specificities of 0.86-0.95. Model performance was positively associated with image SNR and CNR. Conclusions: The trained deep learning models enable accurate, automated CEP segmentations and T2* biomarker computations that are statistically similar to those from manual segmentations. These models address limitations with inefficiency and subjectivity associated with manual methods. Such techniques could be used to elucidate the role of CEP composition in disc degeneration etiology and guide emerging therapies for cLBP.

9.
Opt Lett ; 48(7): 1694-1697, 2023 Apr 01.
Article in English | MEDLINE | ID: mdl-37221743

ABSTRACT

We report ultralow-noise transmission over a 102-km single-mode fiber using a purely nonlinear amplification scheme consisting of a second-order distributed Raman amplifier (DRA) and a phase-sensitive amplifier (PSA) based on periodically poled LiNbO3 waveguides. The hybrid DRA/PSA features a broadband gain over the C and L bands and an ultralow-noise advantage, with a less than -6.3 dB effective noise figure in the DRA stage and a 1.6 dB optical signal-to-noise ratio (OSNR) improvement in the PSA stage. Compared with the unamplified link, the OSNR is improved by 10.2 dB for a 20-Gbaud 16QAM signal in the C band, resulting in error-free detection (a bit-error rate of less than 3.8 × 10-3) for the signal with a low link input power of -25 dBm. Mitigation of nonlinear distortion is also achieved by the proposed nonlinear amplified system due to the subsequent PSA.

10.
Vox Sang ; 118(5): 357-366, 2023 May.
Article in English | MEDLINE | ID: mdl-36896482

ABSTRACT

BACKGROUND AND OBJECTIVES: No systematic study has measured the incidence of adverse reactions (ARs) to blood donation at the national level in China before 2019. The objective of this study was to establish an effective reporting system to collect information on ARs to blood donation in China. MATERIALS AND METHODS: The status of donor haemovigilance (DHV) in blood collection facilities in China was evaluated, and an online DHV system was established to collect data on ARs to blood donation in July 2019. The definitions of ARs were based on the International Society of Blood Transfusion (ISBT) standards. The prevalence and data quality of ARs from 2019 to 2021 were analysed. RESULTS: A standard online reporting system has been established for ARs to blood donation. In total, 61, 62 and 81 participating sites were included in this pilot study in 2019, 2020 and 2021, respectively. From July 2019 to December 2021, 21,502 cases of whole-blood-related ARs and 1114 cases of apheresis platelet-related ARs were reported, with an incidence of 3.8‰ and 2.2‰, respectively. Data completeness for key reporting elements improved from 41.7% (15/36) in 2019 to 74.4% (29/39) in 2020. Data quality analysis for the year 2021 yielded similar results as for 2020. CONCLUSION: The construction and continuous improvement of the blood donor safety monitoring system prompted the establishment of the DHV system. Improvements have been made to the DHV system in China, with a significant increase in sentinels and higher data quality.


Subject(s)
Blood Safety , Blood Transfusion , Humans , Pilot Projects , Blood Safety/methods , Blood Donors , Blood Platelets
11.
Free Radic Biol Med ; 201: 98-110, 2023 05 20.
Article in English | MEDLINE | ID: mdl-36940733

ABSTRACT

Irisin is an exercise-induced myokine that alleviates inflammation and obesity. The induction of anti-inflammatory (M2) macrophage is facilitated for treatment of sepsis and associated lung damage. However, whether irisin drives macrophage M2 polarization remains unclear. Here, we found that irisin induced-macrophage anti-inflammatory differentiation in vivo using an LPS-induced septic mice model and in vitro using RAW64.7 cells and bone marrow-derived macrophages (BMDMs). Irisin also promoted the expression, phosphorylation, and nuclear translocation of peroxisome proliferator-activated receptor gamma (PPAR-γ) and nuclear factor-erythroid 2-related factor 2 (Nrf2). Inhibition or knockdown of PPAR-γ and Nrf2 abolished irisin-induced accumulation of M2 macrophage markers, such as interleukin (IL)-10 and Arginase 1. Furthermore, dual-luciferase reporter and chromatin immunoprecipitation-quantitative PCR (ChIP-qPCR) assays confirmed that STAT6 boosts PPAR-γ and Nrf2 transcription by binding to their DNA promoters in irisin-stimulated macrophages. In contrast, STAT6 shRNA blocked the irisin-induced activation of Pparγ, Nrf2, and related downstream genes. Moreover, the interaction of irisin with its ligand integrin αVß5 remarkably promoted Janus kinase 2 (JAK2) phosphorylation, while inhibition or knockdown of integrin αVß5 and JAK2 attenuated the activation of STAT6, PPAR-γ, and Nrf2 signaling. Interestingly, co-immunoprecipitation (Co-IP) assay also revealed that the binding between JAK2 and integrin αVß5 is critical for irisin-induced macrophage anti-inflammatory differentiation by enhancing the activation of the JAK2-STAT6 pathway. In conclusion, irisin boosted M2 macrophage differentiation by inducing JAK2-STAT6-dependent transcriptional activation of the PPAR-γ-related anti-inflammatory system and Nrf2-related antioxidant genes. The findings of this study suggest that the administration of irisin is a novel and promising therapeutic strategy for infectious and inflammatory diseases.


Subject(s)
Fibronectins , PPAR gamma , Animals , Mice , Cell Differentiation , Fibronectins/genetics , Fibronectins/metabolism , Janus Kinase 2/genetics , Janus Kinase 2/metabolism , Macrophage Activation , Macrophages/metabolism , NF-E2-Related Factor 2/genetics , NF-E2-Related Factor 2/metabolism , PPAR gamma/genetics , PPAR gamma/metabolism , STAT6 Transcription Factor/genetics , STAT6 Transcription Factor/metabolism
12.
PLoS One ; 18(3): e0282419, 2023.
Article in English | MEDLINE | ID: mdl-36928443

ABSTRACT

Chronic pain affects more than 30% of the general population. The 9-item Central Sensitization Inventory (CSI-9) is a shortened version of the CSI-25, which is a patient-reported instrument used to screen people at risk of central sensitization (CS). The aim of this study was to cross-culturally adapt and validate a Chinese version of the CSI-9. The Chinese CSI-9 was generated by translation of the original English version, back-translation, cultural adaptation, and revision using the Delphi method. The Chinese CSI-9 was administered to 235 patients with chronic pain and 55 healthy controls. Structural validity (confirmatory factor analysis), construct validity (correlations with other scales), test-retest reliability (intraclass correlation coefficient, ICC), and internal consistency (Cronbach's α) were evaluated. Confirmatory factor analysis was performed using one factor. The Chinese CSI-9 score was positively correlated with the Pain Catastrophic Scale (PCS) total score (r = 0.463), PCS subscale scores (r = 0.347-0.463), Brief Pain Inventory (BPI) mean item score (r = 0.524), BPI total score (r = 0.773), and the number of painful sites (r = 0.451). The Chinese CSI-9 had excellent test-retest reliability (ICC = 0.958) and excellent internal consistency (Cronbach's α = 0.902 in the overall sample and 0.828 in the chronic pain population). The optimal cut-off value for the Chinese CSI-9 was 18 points. The Chinese CSI-9 had excellent test-retest reliability and satisfactory structural validity and construct validity. The CSI-9 could potentially be utilized in China as a self-report questionnaire in both clinical practice and research settings.


Subject(s)
Chronic Pain , Humans , Chronic Pain/diagnosis , Central Nervous System Sensitization , Cross-Cultural Comparison , Reproducibility of Results , Psychometrics/methods , Surveys and Questionnaires
13.
Eur Spine J ; 32(5): 1517-1524, 2023 05.
Article in English | MEDLINE | ID: mdl-36805320

ABSTRACT

PURPOSE: Clinical management of disc degeneration in patients with chronic low back pain (cLBP) is hampered by the challenge of distinguishing pathologic changes relating to pain from physiologic changes related to aging. The goal of this study was to use imaging biomarkers of disc biochemical composition to distinguish degenerative changes associated with cLBP from normal aging. METHODS: T1ρ MRI data were acquired from 133 prospectively enrolled subjects for this observational study (80 cLBP, 53 controls; mean ± SD age = 43.9 ± 13.4 years; 61 females, 72 males). The mean T1ρ relaxation time in the nucleus pulposus (NP-T1ρ; n = 650 discs) was used as a quantitative biomarker of disc biochemical composition. Linear regression was used to assess associations between NP-T1ρ and age, sex, spinal level, and study group, and their interactions. RESULTS: NP-T1ρ values were lower in cLBP patients than controls (70.8 ± 22.8 vs. 76.4 ± 22.2 ms, p = 0.009). Group differences were largest at L5-S1 (ΔT1ρcLBP-control = -11.3 ms, p < 0.0001), representing biochemical deterioration typically observed over a 9-12 year period (NP-T1ρ declined by 0.8-1.1 ms per year [95% CI]). Group differences were large in younger patients and diminished with age. Finally, the age-dependence of disc degeneration was stronger in controls than cLBP patients. CONCLUSION: Aging effects on the biochemical composition of the L5-S1 disc may involve a relatively uniform set of factors from which many cLBP patients deviate. NP-T1ρ values at L5-S1 may be highly relevant to clinical phenotyping, particularly in younger individuals.


Subject(s)
Intervertebral Disc Degeneration , Intervertebral Disc , Low Back Pain , Male , Female , Humans , Adult , Middle Aged , Intervertebral Disc Degeneration/diagnostic imaging , Intervertebral Disc Degeneration/pathology , Low Back Pain/pathology , Intervertebral Disc/diagnostic imaging , Intervertebral Disc/pathology , Magnetic Resonance Imaging/methods , Lumbar Vertebrae/diagnostic imaging , Lumbar Vertebrae/pathology , Bioengineering
14.
IEEE Trans Pattern Anal Mach Intell ; 45(5): 5370-5390, 2023 May.
Article in English | MEDLINE | ID: mdl-36251910

ABSTRACT

Graphs are important data representations for describing objects and their relationships, which appear in a wide diversity of real-world scenarios. As one of a critical problem in this area, graph generation considers learning the distributions of given graphs and generating more novel graphs. Owing to their wide range of applications, generative models for graphs, which have a rich history, however, are traditionally hand-crafted and only capable of modeling a few statistical properties of graphs. Recent advances in deep generative models for graph generation is an important step towards improving the fidelity of generated graphs and paves the way for new kinds of applications. This article provides an extensive overview of the literature in the field of deep generative models for graph generation. First, the formal definition of deep generative models for the graph generation and the preliminary knowledge are provided. Second, taxonomies of deep generative models for both unconditional and conditional graph generation are proposed respectively; the existing works of each are compared and analyzed. After that, an overview of the evaluation metrics in this specific domain is provided. Finally, the applications that deep graph generation enables are summarized and five promising future research directions are highlighted.

15.
Biotechnol Bioeng ; 120(3): 778-792, 2023 03.
Article in English | MEDLINE | ID: mdl-36477904

ABSTRACT

Solid plates have been used for microbial monoclonal isolation, cultivation, and colony picking since 1881. However, the process is labor- and resource-intensive for high-throughput requirements. Currently, several instruments have been integrated for automated and high-throughput picking, but complicated and expensive. To address these issues, we report a novel integrated platform, the single-cell microliter-droplet screening system (MISS Cell), for automated, high-throughput microbial monoclonal colony cultivation and picking. We verified the monoclonality of droplet cultures in the MISS Cell and characterized culture performance. Compared with solid plates, the MISS Cell generated a larger number of monoclonal colonies with higher initial growth rates using fewer resources. Finally, we established a workflow for automated high-throughput screening of Corynebacterium glutamicum using the MISS Cell and identified high glutamate-producing strains. The MISS Cell can serve as a universal platform to efficiently produce monoclonal colonies in high-throughput applications, overcoming the limitations of solid plates to promote rapid development in biotechnology.


Subject(s)
Biotechnology , Corynebacterium glutamicum , High-Throughput Screening Assays
16.
Eur Child Adolesc Psychiatry ; 32(8): 1475-1486, 2023 Aug.
Article in English | MEDLINE | ID: mdl-35182242

ABSTRACT

There is an increasing interest in non-pharmacological treatments for children with attention-deficit/hyperactivity disorder (AD/HD), especially digital techniques that can be remotely delivered, such as neurofeedback (NFT) and computerized cognitive training (CCT). In this study, a randomized controlled design was used to compare training outcomes between remotely delivered NFT, CCT, and combined NFT/CCT training approaches. A total of 121 children with AD/HD were randomly assigned to the NFT, CCT, or NFT/CCT training groups, with 80 children completing the training program. Pre- and post-training symptoms (primary outcome), executive and daily functions were measured using questionnaires as well as resting EEG during eyes-closed (EC) and eyes-open (EO) conditions. After 3 months of training, the inattentive and hyperactive/impulsive symptoms, inhibition, working memory, learning and life skills of the three groups of children were significantly improved. The objective EEG activity showed a consistent increase in the relative alpha power in the EO condition among the three training groups. Training differences were not observed between groups. There was a positive correlation between pre-training EO relative alpha power and symptom improvement scores of inattention and hyperactivity/impulsivity, as well as a negative correlation between pre-training inattention scores and change in EO relative alpha. This study verified the training effects of NFT, CCT, and combined NFT/CCT training in children with AD/HD and revealed an objective therapeutic role for individual relative alpha activity. The verified feasibility and effectiveness of home-based digital training support promotion and application of digital remote training.


Subject(s)
Attention Deficit Disorder with Hyperactivity , Neurofeedback , Humans , Child , Neurofeedback/methods , Attention Deficit Disorder with Hyperactivity/psychology , Learning , Cognition , Research Design , Electroencephalography
17.
IEEE Trans Neural Netw Learn Syst ; 34(11): 8225-8234, 2023 Nov.
Article in English | MEDLINE | ID: mdl-35298382

ABSTRACT

Deep generative models for graphs have recently achieved great successes in modeling and generating graphs for studying networks in biology, engineering, and social sciences. However, they are typically unconditioned generative models that have no control over the target graphs given a source graph. In this article, we propose a novel graph-translation-generative-adversarial-nets (GT-GAN) model that transforms the source graphs into their target output graphs. GT-GAN consists of a graph translator equipped with innovative graph convolution and deconvolution layers to learn the translation mapping considering both global and local features. A new conditional graph discriminator is proposed to classify the target graphs by conditioning on source graphs while training. Extensive experiments on multiple synthetic and real-world datasets in the domain of cybernetworks, the Internet of Things, and neuroscience demonstrate that the proposed GT-GAN model significantly outperforms other baseline methods in terms of both effectiveness and scalability. For instance, GT-GAN outperforms the classical state-of-the-art (SOTA) methods in functional connectivity (FC) prediction of brain networks by at least 32.5%.

18.
Langmuir ; 38(45): 13753-13762, 2022 11 15.
Article in English | MEDLINE | ID: mdl-36331054

ABSTRACT

It is very important to build uniform large-area dense hotspots to improve the surface-enhanced Raman scattering (SERS) detection limit. In our research, we designed and prepared a new flexibile SERS substrate with ultradense hot spots that has the advantages of high sensitivity, good repeatability, easy fabrication, and low cost. Due to the special dense hot spot structure, the substrate reaches a SERS enhancement factor of 2.1 × 1011. Because of the excellent physical stability of polydimethylsiloxane, the substrate can be bent at will, and the SERS performance will not change with bending. This is very important to extract effective detection objects on complex surfaces. The substrate has good light transmittance and softness and can be directly attached to the detected agricultural products to realize real-time and rapid SERS monitoring. This structure exhibits extraordinary performance for thiram detection in the ultralow concentration range of 10-13 M.


Subject(s)
Metal Nanoparticles , Thiram , Silver/chemistry , Silicon Dioxide , Metal Nanoparticles/chemistry , Spectrum Analysis, Raman
19.
Article in English | MEDLINE | ID: mdl-36305677

ABSTRACT

Based on etched PS sphere arrays, the different growths of Ag nanoparticles with tunable LSPR are designed when SiO2-25 nm/Ag-30 nm/SiO2-100 nm sandwich nanocavity structures are annealed at 500 °C, including the hexagonal silver nanoparticle rings, circular silver nanoparticle rings, and aggregated silver nanoparticles. The uniformity of particle size and regularity of position generate enhanced electromagnetic field and good surface-enhanced Raman spectroscopy signals as confirmed by UV-vis observation and finite difference time domain method simulation. The developed nanostructures are effectively used as stable, nonreproducible, and markable anti-counterfeiting signs.

20.
Front Immunol ; 13: 1000681, 2022.
Article in English | MEDLINE | ID: mdl-36248865

ABSTRACT

Background: The safety and immunogenicity of a personalized neoantigen-based peptide vaccine, iNeo-Vac-P01, was reported previously in patients with a variety of cancer types. The current study investigated the synergistic effects of radiofrequency ablation (RFA) and neoantigen vaccination in cancer patients and tumor-bearing mice. Methods: Twenty-eight cancer patients were enrolled in this study, including 10 patients who had received RFA treatment within 6 months before vaccination (Cohort 1), and 18 patients who had not (Cohort 2). Individualized neoantigen peptide vaccines were designed, manufactured, and subcutaneously administrated with GM-CSF as an adjuvant for all patients. Mouse models were employed to validate the synergistic efficacy of combination treatment of RFA and neoantigen vaccination. Results: Longer median progression free survival (mPFS) and median overall survival (mOS) were observed in patients in Cohort 1 compared to patients in Cohort 2 (4.42 and 20.18 months vs. 2.82 and 10.94 months). The results of ex vivo IFN-γ ELISpot assay showed that patients in Cohort 1 had stronger neoantigen-specific immune responses at baseline and post vaccination. Mice receiving combination treatment of RFA and neoantigen vaccines displayed higher antitumor immune responses than mice receiving single modality. The combination of PD-1 blockage with RFA and neoantigen vaccines further enhanced the antitumor response in mice. Conclusion: Neoantigen vaccination after local RFA treatment could improve the clinical and immune response among patients of different cancer types. The synergistic antitumor potentials of these two modalities were also validated in mice, and might be further enhanced by immune checkpoint inhibition. The mechanisms of their synergies require further investigation. Clinical trial registration: https://clinicaltrials.gov/, identifier NCT03662815.


Subject(s)
Cancer Vaccines , Neoplasms , Radiofrequency Ablation , Animals , Mice , Granulocyte-Macrophage Colony-Stimulating Factor , Immune Checkpoint Inhibitors , Immunotherapy/methods , Neoplasms/therapy , Programmed Cell Death 1 Receptor , Vaccination , Vaccines, Subunit
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