Comparative analysis of bottom trawl and nanopore sequencing in fish biodiversity assessment: The sylt outer reef example.

The assessment of fish diversity is crucial for effective conservation and management strategies, especially in ecologically sensitive regions such as marine protected areas. This study contrasts the effectiveness of environmental DNA (eDNA) metabarcoding analysis employing Nanopore technology with compare beam trawl surveys at the Sylt Outer Reef, a Natura 2000 site in the North Sea, Germany. Out of the 17 fish species caught in a bottom trawl (using a 3m beam trawl), 14 were also identified through eDNA extracted from water samples. The three species not detected in the eDNA results were absent because they lacked representation in public DNA databases. The eDNA method detected twice as many fish species as the beam trawl, totalling 36 species, of which 14 were also detected by the trawl. Additionally, the selection of primers (Mifish) facilitated the identification of one marine mammal species, the harbour porpoise. In conclusion, the findings underscore the potential of eDNA coupled with MinION sequencing (Long read technology) as a robust tool for biodiversity assessment, surpassing traditional methods in detecting species richness.

Thresholds of seascape fauna composition along gradients of human pressures and natural conditions to inform marine spatial planning.

Knowledge about the cumulative impacts of anthropogenic activities and environmental conditions on marine ecosystems is incomplete and details are lacking. Compositional community changes can occur along gradients, and community data can be used to assess the state of community resilience against combined impacts of variables representing human pressures and environmental conditions. Here we use a machine learning approach, i.e., Gradient Forest, to identify explanatory variable thresholds and select relevant epibenthic fauna and demersal fish species, which can be used to inform an integrated management of multiple human pressures and conservation planning in the southern North Sea. We show that a broad selection of anthropogenic and environmental variables, such as natural disturbance of the seafloor and euphotic depth, determined community composition thresholds of 67 epibenthic fauna and 39 demersal fish species along environmental conditions and human pressure gradients in the southern North Sea between 2010 and 2020. This has the potential to inform resilience assessments under the Marine Strategy Framework Directive to promote and retain a good environmental status of marine ecosystems.

Sustainable co-location solutions for offshore wind farms and fisheries need to account for socio-ecological trade-offs.

The spatial expansion of offshore wind farms (OWFs) is key for the transition to a carbon free energy sector. In the North Sea, the sprawl of OWFs is regulated by marine spatial planning (MSP) and results in an increasing loss of space for other sectors such as fisheries. Understanding fisheries benefits of OWFs and mitigating the loss of fishing grounds is key for co-location solutions in MSP. For the German exclusive economic zone (EEZ) of the North Sea we conducted a novel socio-ecological assessment of fisheries benefits which combines exploring potential spill-over from an OWF with an experimental brown crab (Cancer pagurus) pot fishery and an economic viability analysis of such a fishery. We arrayed a total of 205 baited pots along transects from an OWF located near the island of Helgoland. After a soaking time of 24 h we retrieved the pots and measured the carapace width (mm), weight (g), and sex of each individual crab. To conclude on cumulative spill-over potentials from all OWFs in the German EEZ and drivers of passive gear fisheries we analysed vessel monitoring system (VMS)-data and computed random forest regressions. Local spill-over mechanisms occurred up to distances of 300 to 500 m to the nearest turbines and revealed an increasing attraction of pot fishing activities to particular OWFs. This corresponds to the observation of constantly increasing fishing effort targeting brown crab likely due to both a growing international demand and stable resource populations at suitable habitats, including OWFs. Our break-even scenarios showed that beam trawlers have the capacities to conduct during summer an opportunistic but economically viable pot fishery. We argue that particularly in the North Sea, where space becomes limited, integrated assessments of the wider environmental and socio-economic effects of planning are crucial for a sustainable co-location of OWFs and fisheries.

Spatiotemporal accumulation of fatal pharyngeal entrapment of flatfish in harbour porpoises (Phocoena phocoena) in the German North Sea.

The evolution of a permanent separation of the upper respiratory and digestive tract is one of the adaptions cetaceans evolved for their aquatic life. Generally, it prevents odontocetes from choking on either saltwater or foreign bodies during ingestion under water. Nevertheless, several sporadic single case reports from different parts of the world show that this separation can be reversed especially by overly large items of prey. This incident can have a fatal outcome for the odontocetes. The German federal state of Schleswig-Holstein has a year-round, permanent and systematic stranding network that retrieves stranded marine mammals from its shorelines and constantly enables post-mortem examinations. In 2016, with nine affected animals, a high incidence of fatal pharyngeal entrapment of flatfish in harbour porpoises (Phocoena phocoena) occurred during spring and early summer on the German North Sea island of Sylt. All flatfish were identified as common sole (Solea solea). A retrospective post-mortem data analysis over a 30-year period from the North and Baltic Sea revealed similar yearly and seasonally case accumulations on the same island in the 1990s as well as several single case events over the whole timespan. All cases except one were caused by flatfish. When flatfish speciation was performed, only common sole was identified. From 1990 to 2019, of all examined harbour porpoises, 0.3% (2/713) from the Baltic Sea and 5.5% (45/820) from the North Sea died due to fish entrapped in the pharynx. On the North Sea coast, the occurrence of fatal obstruction shows high yearly variations from 0 to 33.3%. Years that stand out are especially 1990 to 1992, 1995, as well as 2016. The majority of all cases generally occurred between April and July, indicating also a seasonality of cases. This study evaluates the occurrence of fatal pharyngeal entrapment of fish in two geographically separated harbour porpoise populations. Additionally, common sole is clearly identified as a potentially risky item of prey for these small odontocetes.

Genetic analyses reveal complex dynamics within a marine fish management area.

Genetic data have great potential for improving fisheries management by identifying the fundamental management units-that is, the biological populations-and their mixing. However, so far, the number of practical cases of marine fisheries management using genetics has been limited. Here, we used Atlantic cod in the Baltic Sea to demonstrate the applicability of genetics to a complex management scenario involving mixing of two genetically divergent populations. Specifically, we addressed several assumptions used in the current assessment of the two populations. Through analysis of 483 single nucleotide polymorphisms (SNPs) distributed across the Atlantic cod genome, we confirmed that a model of mechanical mixing, rather than hybridization and introgression, best explained the pattern of genetic differentiation. Thus, the fishery is best monitored as a mixed-stock fishery. Next, we developed a targeted panel of 39 SNPs with high statistical power for identifying population of origin and analyzed more than 2,000 tissue samples collected between 2011 and 2015 as well as 260 otoliths collected in 2003/2004. These data provided high spatial resolution and allowed us to investigate geographical trends in mixing, to compare patterns for different life stages and to investigate temporal trends in mixing. We found similar geographical trends for the two time points represented by tissue and otolith samples and that a recently implemented geographical management separation of the two populations provided a relatively close match to their distributions. In contrast to the current assumption, we found that patterns of mixing differed between juveniles and adults, a signal likely linked to the different reproductive dynamics of the two populations. Collectively, our data confirm that genetics is an operational tool for complex fisheries management applications. We recommend focussing on developing population assessment models and fisheries management frameworks to capitalize fully on the additional information offered by genetically assisted fisheries monitoring.