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1.
Front Microbiol ; 14: 1285445, 2023.
Article in English | MEDLINE | ID: mdl-38029158

ABSTRACT

Rotational shifting cultivation (RSC) in Northern Thailand serves the dual purpose of ensuring food security and meeting economic goals through maize cultivation. However, the research question remains: Does the dynamics of soil bacterial communities differ between maize monoculture and RSC fields with continuous fallow throughout the season? Therefore, the objective of this study was to investigate and compare the variation of soil bacterial communities in maize monoculture and fallow RSC fields. A continuous 5-year fallow field (undisturbed soil; CF-5Y) and a continuous 5-year maize cultivation field (M-5Y) in Mae Chaem District, Chiang Mai Province, Northern Thailand, were selected due to their similarities in microclimate, topography, and the 5-year duration of different field activities. Over the span of a year, we collected soil samples from the surface layer (0-2 cm depth) at both sites. These collections occurred at 3-month intervals, starting from March 2022 (summer season) and followed by June (rainy season), September (rainy season), December (winter season), and March 2023 (summer season). Soil bacterial diversity and composition were analyzed using 16S rRNA gene-based metagenomic analysis. The results found that undisturbed soil over a 5-year period exhibited more stability in the richness and diversity of bacteria across seasons compared with M-5Y. Notably, fertilizer application and tillage practices in M-5Y can enhance both the diversity and richness of soil bacteria. In terms of bacterial abundance, Proteobacteria prevailed in CF-5Y, while Actinobacteria dominated in M-5Y. At the genus level, Candidatus Udaeobacter dominated during the summer and winter seasons in both CF-5Y and M-5Y sites. Interestingly, during the rainy season, the dominant genus shifted to Bacillus in both CF-5Y and M-5Y fields. The soil bacterial community in M-5Y was strongly influenced by organic matter (OM) and organic carbon (OC). In contrast, in CF-5Y, there was no correlation between soil properties and the soil bacterial community, likely due to the lower variation in soil properties across seasons. ß-Glucosidase was the dominant enzyme in both CF-5Y and M-5Y sites, and it showed a positive correlation with OM and OC. Further studies should continue to investigate soil bacteria dynamics, considering the changes in land management practices.

2.
Biology (Basel) ; 12(4)2023 Mar 26.
Article in English | MEDLINE | ID: mdl-37106702

ABSTRACT

Rice straw and stubble burning is widely practiced to clear fields for new crops. However, questions remain about the effects of fire on soil bacterial communities and soil properties in paddy fields. Here, five adjacent farmed fields were investigated in central Thailand to assess changes in soil bacterial communities and soil properties after burning. Samples of soil prior to burning, immediately after burning, and 1 year after burning were obtained from depths of 0 to 5 cm. The results showed that the pH, electrical conductivity, NH4-N, total nitrogen, and soil nutrients (available P, K, Ca, and Mg) significantly increased immediately after burning due to an increased ash content in the soil, whereas NO3-N decreased significantly. However, these values returned to the initial values. Chloroflexi were the dominant bacteria, followed by Actinobacteria and Proteobacteria. At 1 year after burning, Chloroflexi abundance decreased remarkably, whereas Actinobacteria, Proteobacteria, Verrucomicrobia, and Gemmatimonadetes abundances significantly increased. Bacillus, HSB OF53-F07, Conexibacter, and Acidothermus abundances increased immediately after burning, but were lower 1 year after burning. These bacteria may be highly resistant to heat, but grow slowly. Anaeromyxobacter and Candidatus Udaeobacter dominated 1 year after burning, most likely because of their rapid growth and the fact that they occupy areas with increased soil nutrient levels after fires. Amidase, cellulase, and chitinase levels increased with increased organic matter levels, whereas ß-glucosidase, chitinase, and urease levels positively correlated with the soil total nitrogen level. Although clay and soil moisture strongly correlated with the soil bacterial community's composition, negative correlations were found for ß-glucosidase, chitinase, and urease. In this study, rice straw and standing stubble were burnt under high soil moisture and within a very short time, suggesting that the fire was not severe enough to raise the soil temperature and change the soil microbial community immediately after burning. However, changes in soil properties due to ash significantly increased the diversity indices, which was noticeable 1 year after burning.

3.
Sci Rep ; 13(1): 230, 2023 01 05.
Article in English | MEDLINE | ID: mdl-36604582

ABSTRACT

Simulation of future climate changes, especially temperature and rainfall, is critical for water resource management, disaster mitigation, and agricultural development. Based on the category-wise indicator method, two preferred Global Climate Models (GCMs) for the Ishikari River basin (IRB), the socio-economic center of Hokkaido, Japan, were examined from the newly released Coupled Model Intercomparison Project Phase 6 (CMIP6). Climatic variables (maximum/minimum temperature and precipitation) were projected by the Statistical DownScaling Model (SDSM) under all shared socioeconomic pathway-representative concentration pathway (SSP-RCP) scenarios (SSP1-1.9, SSP1-2.6, SSP2-4.5, SSP3-7.0, SSP4-3.4, SSP4-6.0, SSP5-3.4OS, and SSP5-8.5) in two phases: 2040-2069 (2040s) and 2070-2099 (2070s), with the period of 1985-2014 as the baseline. Predictors of SDSM were derived from CMIP6 GCMs and the reanalysis dataset NOAA-CIRES-DOE 20th Century Reanalysis V3 (20CRv3). Results showed that CMIP6 GCMs had a significant correlation with temperature measurements, but could not represent precipitation features in the IRB. The constructed SDSM could capture the characteristics of temperature and precipitation during the calibration (1985-1999) and validation (2000-2014) phases, respectively. The selected GCMs (MIROC6 and MRI-ESM-2.0) generated higher temperature and less rainfall in the forthcoming phases. The SSP-RCP scenarios had an apparent influence on temperature and precipitation. High-emission scenarios (i.e., SSP5-8.5) would project a higher temperature and lower rainfall than the low-emission scenarios (e.g., SSP1-1.9). Spatial-temporal analysis indicated that the northern part of the IRB is more likely to become warmer with heavier precipitation than the southern part in the future. Higher temperature and lower rainfall were projected throughout the late twenty-first century (2070s) than the mid-century (2040s) in the IRB. The findings of this study could be further used to predict the hydrological cycle and assess the ecosystem's sustainability.


Subject(s)
Climate Models , Ecosystem , Climate Change , Japan , Agriculture
4.
Biology (Basel) ; 11(8)2022 Aug 20.
Article in English | MEDLINE | ID: mdl-36009869

ABSTRACT

Soil microorganisms play an important role in determining nutrient cycling. The integration of fish into rice fields can influence the diversity and structural composition of soil microbial communities. However, regarding the rice-fish co-culture (RF) farming system in Thailand, the study of the diversity and composition of soil microbes is still limited. Here, we aim to compare the microbial diversity, community composition, and functional structure of the bacterial communities between RF and rice monoculture (MC) farming systems and identify the environmental factors shaping bacterial community composition. Bacterial taxonomy was observed using 16s rRNA gene amplicon sequencing, and the functional structures of the bacterial communities were predicted based on their taxonomy and sequences. The results showed that soil organic carbon, total nitrogen (TN), organic matter, available phosphorous, and clay content were significantly higher in RF than in MC. The most dominant taxa across both paddy rice fields belonged to Actinobacteria, Chloroflexi, Proteobacteria, Acidobacteria, and Planctomycetes. The taxa Nitrosporae, Rokubacteria, GAL15, and Elusimicrobia were significantly different between both rice fields. At the genus level, Bacillus, Anaeromyxobacter, and HSB OF53-F07 were the predominant genera in both rice fields. The most abundant genus in MC was Anaeromyxobacter, whereas RF belonged to Bacillus. The community composition in MC was positively correlated with magnesium and sand content, while in RF was positively correlated with pH, TN, and clay content. Nitrogen fixation, aromatic compound degradation, and hydrocarbon degradation were more abundant in RF, while cellulolysis, nitrification, ureolysis, and phototrophy functional groups were more abundant in MC. The enzymes involved in paddy soil ecosystems included phosphatase, ß-glucosidase, cellulase, and urease. These results provide novel insights into integrated fish in the paddy field as an efficient agricultural development strategy for enhancing soil microorganisms that increase soil fertility.

5.
J Environ Manage ; 302(Pt A): 113978, 2022 Jan 15.
Article in English | MEDLINE | ID: mdl-34710759

ABSTRACT

Fire has been used for land clearing under rotational shifting cultivation (RSC) in Northern Thailand for a long time. However, the effects of fire on soil organic carbon (SOC), soil total nitrogen (STN), and soil properties are not well understood. We determined SOC, STN, and soil properties of the topsoil layer (0-30 cm) along a fallow chronosequence under RSC and assessed how fire affects SOC, STN, and soil properties. Eight fields at Ban Mae Pok, Mae Chaem District, Chiang Mai Province, Northern Thailand, were investigated. The levels of SOC, STN, and soil properties were observed at three time points: pre-burning, post-burning (5 minutes after burning), and post-harvest (nine months after burning). The highest SOC and STN stocks, organic matter (OM), and clay content were observed for the longest fallow period (7 years fallow), whereas the shortest period (1 year fallow) resulted in the lowest SOC and STN stocks. Fire caused no significant changes in SOC, STN, and some soil properties (soil texture, available P, exchangeable K, exchangeable Ca, exchangeable Mg, bulk density, and OM) because of the low fire intensity and short fire duration. Only pH and electrical conductivity were significantly increased (p ≤ 0.05) after burning due to the demobilization of base cations in burnt vegetation and incorporation into the soil with ashes and wood charcoal. Although fire may still be necessary for RSC, maintaining the fire intensity below 380 °C to reduce SOC losses and appropriate post-fire management strategies to reduce STN losses are crucial.


Subject(s)
Carbon , Fires , Carbon/analysis , Nitrogen/analysis , Soil , Thailand
6.
Agric Water Manag ; 203: 277-288, 2018 Apr 30.
Article in English | MEDLINE | ID: mdl-29881138

ABSTRACT

The semi-arid region of the Loess Plateau is typical of rain-fed agricultural production in Northwestern China. In this area, the ridge mulched system (RM) is a widely-used measure to increase crop yield. The purpose of this study was to investigate the effect of RM on soil water and inorganic nitrogen (N) distribution, and grain yield of maize (Zea mays L.). The study was conducted over three consecutive years and consisted of four treatments (each replicated three times): i) RM with N application rate of 260 kg N ha-1 (RM-N260); ii) RM with 180 kg N ha-1 (RM-N180); iii) a traditional flat cultivation system without mulching (F) with 260 kg N ha-1 (F-N260); iv) F with 180 kg N ha-1 (F-N180). Mean soil water content during the maize growing season was increased by RM in 2013 only. However, RM increased the soil water storage significantly at the 3-leaf (V3) and 6-leaf stage (V6), and decreased evapotranspiration (ET) during pre-silking stage in all years. Compared to F, RM significantly improved maize grain yield by 79-123% in 2013, 23-25% in 2014, and 11-12% in 2015. Following three years of maize cultivation, soil inorganic N content increased substantially (two- to three-fold) in the RM system and 60% of the total inorganic N was accumulated in the top soil layers (0-60 cm) under the mulched ridge. Relative changes were much smaller in F, and most of inorganic N was stored in 0-20 cm and 100-160 cm soil layers. Generally, RM resulted in higher soil water storage during the pre-silking stage, which was the main reason for the improved maize grain yield. The nitrate leaching risk was reduced in RM-N180 compared with F, but nitrate leaching from the furrows between ridges was observed in RM-N260. However, the large increase in soil inorganic N content in RM-N180 after three years' cultivation indicates an oversupply of N and a potential risk of N losses to the environment over the longer term. Our study indicates, therefore, that RM is a suitable system for maize cropping in the semi-arid region of the Loess Plateau, with benefits in water and N use efficiency, but recommendations for appropriate N application rates are required to ensure long term agricultural sustainability, accounting for grain yields and environmental impacts. The mechanisms for inorganic N accumulation under the RM system are not fully understood and warrant further investigation.

7.
Microbes Environ ; 32(2): 103-111, 2017 Jun 24.
Article in English | MEDLINE | ID: mdl-28450660

ABSTRACT

In order to understand the relationships between understory bamboo and soil properties, we compared microbial community structures in the soil of a Betula ermanii boreal forest with Sasa kurilensis present and removed using high-throughput DNA sequencing. The presence of understory S. kurilensis strongly affected soil properties, including total carbon, total nitrogen, nitrate, and the C:N ratio as well as relative soil moisture. Marked differences were also noted in fungal and bacterial communities between plots. The relative abundance of the fungal phylum Ascomycota was 13.9% in the Sasa-intact plot and only 0.54% in the Sasa-removed plot. Among the Ascomycota fungi identified, the most prevalent were members of the family Pezizaceae. We found that the abundance of Pezizaceae, known to act as mycorrhizal fungi, was related to the amount of total carbon in the Sasa-intact plot. The relative abundance of Proteobacteria was significantly higher, whereas those of Planctomycetes and Actinobacteria were lower in the Sasa-intact plot than in the Sasa-removed plot. Furthermore, the results obtained suggest that some species of the phylum Planctomycetes are more likely to occur in the presence of S. kurilensis. Collectively, these results indicate that the presence of S. kurilensis affects microbial communities and soil properties in a B. ermanii boreal forest.


Subject(s)
Betula , Forests , Sasa/growth & development , Soil Microbiology , Bacteria/classification , Carbon/analysis , Fungi/classification , High-Throughput Nucleotide Sequencing , Japan , Nitrogen/analysis , Sequence Analysis, DNA , Soil/chemistry
8.
Microbes Environ ; 31(2): 93-103, 2016 Jun 25.
Article in English | MEDLINE | ID: mdl-27109825

ABSTRACT

Dent corn Andisol at the Hokkaido University Shizunai Livestock Experimental Farm actively emits nitrous oxide (N2O). In order to screen for culturable and active N2O emitters with high N2O emission potential, soft gel medium containing excess KNO3 was inoculated with soil suspensions from farm soil samples collected at different land managements. Dominant bacterial colonies were searched for among 20 of the actively N2O-emitting cultures from post-harvest soil and 19 from pre-tilled soil, and all isolates were subjected to the culture-based N2O emission assay. Ten active N2O-emitting bacteria, four from post-harvest soil and six from pre-tilled soil, out of 156 isolates were identified as genus Pseudomonas by 16S rRNA gene sequencing. These N2O emitters showed clear responses to NO3(-) within a neutral pH range (5.5-6.7), and accelerated N2O production with 1.5-15 mM sucrose supplementation, suggesting the production of N2O during the denitrification process. However, the negative responses of 6 active N2O emitters, 3 from post-harvest soil and 3 from pre-tilled soil, out of the 10 isolates in the acetylene-blocking assay suggest that these 6 N2O emitters are incomplete denitrifiers that have lost their N2O reductase (N2OR) activity. Although the PCR assay for the denitrification-associated genes, narG and nirK/S, was positive in all 10 Pseudomonas isolates, those negative in the acetylene-blocking assay were nosZ-negative. Therefore, these results imply that the high N2O emission potential of dent corn Andisol is partly attributed to saprophytic, nosZ gene-missing pseudomonad denitrifiers.


Subject(s)
Nitrous Oxide/metabolism , Pseudomonas/isolation & purification , Pseudomonas/metabolism , Soil Microbiology , Cluster Analysis , Culture Media/chemistry , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Denitrification , Hydrogen-Ion Concentration , Japan , Metabolic Networks and Pathways , Nitrates/metabolism , Phylogeny , Polymerase Chain Reaction , Pseudomonas/classification , Pseudomonas/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sucrose/metabolism , Zea mays/growth & development
9.
Sci Total Environ ; 554-555: 293-302, 2016 Jun 01.
Article in English | MEDLINE | ID: mdl-26956176

ABSTRACT

Soil C sequestration in croplands is deemed to be one of the most promising greenhouse gas mitigation options for agriculture. We have used crop-level yields, modeled heterotrophic respiration (Rh) and land use data to estimate spatio-temporal changes in regional scale net primary productivity (NPP), plant C inputs, and net biome productivity (NBP) in northern Japan's arable croplands and grasslands for the period of 1959-2011. We compared the changes in C stocks derived from estimated NBP and using repeated inventory datasets for each individual land use type from 2005 to 2011. For the entire study region of 2193 ha, overall annual plant C inputs to the soil constituted 37% of total region NPP. Plant C inputs in upland areas (excluding bush/fallow) could be predicted by climate variables. Overall NBP for all land use types increased from -1.26MgCha(-1)yr(-1) in 1959-0.26 Mg Cha(-1)yr(-1) in 2011. However, upland and paddy fields showed a decreased in NBP over the period of 1959-2011, under the current C input scenario. From 1988, an increase in agricultural abandonment (bush/fallow) and grassland cover caused a slow increase in the regional C pools. The comparison of carbon budgets using the NBP estimation method and the soil inventory method indicated no significant difference between the two methods. Our results showed C loss in upland crops, paddy fields and sites that underwent land use change from paddy field to upland sites. We also show C gain in grassland from 2005 to 2011. An underestimation of NBP or an overestimation of repeated C inventories cannot be excluded, but either method may be suitable for tracking absolute changes in soil C, considering the uncertainty associated with these methods.


Subject(s)
Agriculture/statistics & numerical data , Ecosystem , Environmental Monitoring , Carbon Cycle , Climate , Greenhouse Effect , Japan , Models, Theoretical , Soil
10.
Environ Monit Assess ; 187(4): 206, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25805369

ABSTRACT

It is difficult to investigate the factors that control the riverine nitrate-nitrogen (NO3--N) export in a watershed which gains or losses groundwater. To control the NO3--N contamination in these watersheds, it is necessary to investigate the factors that are related to the export of NO3--N that is only produced by the watershed itself. This study was conducted in the Shibetsu watershed located in eastern Hokkaido, Japan, which gains external groundwater contribution (EXT) and 34% of the annual NO3--N loading occurs through EXT. The riverine NO3--N exports from 1980 to 2009 were simulated by the SWAT model, and the factors controlling the temporal and spatial patterns of NO3--N exports were investigated without considering the EXT. The results show that hydrological events control NO3--N export at the seasonal scale, while the hydrological and biogeochemical processes are likely to control NO3--N export at the annual scale. There was an integrated effect among the land use, topography, and soil type related to denitrification process, that regulated the spatial patterns of NO3--N export. The spatial distribution of NO3--N export from hydrologic response units (HRUs) identified the agricultural areas with surplus N that are vulnerable to nitrate contamination. A new standard for the N fertilizer application rate including manure application should be given to control riverine NO3--N export. This study demonstrates that applying the SWAT model is an appropriate method to determine the temporal and spatial patterns of NO3--N export from the watershed which includes EXT and to identify the crucial pollution areas within a watershed in which the management practices can be improved to more effectively control NO3--N export to water bodies.


Subject(s)
Dairying , Environmental Monitoring , Nitrates/analysis , Nitrogen/analysis , Water Pollutants, Chemical/analysis , Agriculture , Fertilizers , Groundwater , Hydrology , Japan , Manure , Models, Theoretical , Soil
11.
Environ Sci Process Impacts ; 16(12): 2752-7, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25323984

ABSTRACT

Many miniaturized mass spectrometers used for on-site analysis have been designed and developed recently utilizing a broad range of analyzer platforms. These instruments are expected to have widespread applications covering many fields of interest. In our laboratory, a miniaturized multi-turn time-of-flight (TOF) mass spectrometer "MULTUM-S II" was designed and constructed. The size and weight of the developed "MULTUM-S II" are 45 cm × 23 cm × 64 cm and 36 kg. Irrespective of this small platform, it still boasts a high mass resolution capability of more than 30,000. In this study, we attempted to carry out real-time monitoring of gaseous compounds such as N2, O2, CO2, N2O and CH4. Using conventional miniaturized mass spectrometers, CO2 and N2O cannot be detected simultaneously due to the low mass resolution inherent to these established analyzer designs. Using a new method, "GC/high resolution mass spectrometry" described in this paper, real time monitoring of gases emitted from soils can be achieved. In a soil incubation experiment, CO2 and N2O started to increase just after water supplement and these gases varied similarly during the experiment, thus showing that this improved gas analyzing system could monitor the short time response of gaseous production in soil.


Subject(s)
Air Pollutants/analysis , Environmental Monitoring/methods , Soil/chemistry , Carbon Dioxide/analysis , Gases/analysis , Mass Spectrometry , Methane/analysis
12.
Glob Chang Biol ; 19(6): 1676-87, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23504937

ABSTRACT

Global soil carbon (C) stocks account for approximately three times that found in the atmosphere. In the Aso mountain region of Southern Japan, seminatural grasslands have been maintained by annual harvests and/or burning for more than 1000 years. Quantification of soil C stocks and C sequestration rates in Aso mountain ecosystem is needed to make well-informed, land-use decisions to maximize C sinks while minimizing C emissions. Soil cores were collected from six sites within 200 km(2) (767-937 m asl.) from the surface down to the k-Ah layer established 7300 years ago by a volcanic eruption. The biological sources of the C stored in the Aso mountain ecosystem were investigated by combining C content at a number of sampling depths with age (using (14) C dating) and δ(13) C isotopic fractionation. Quantification of plant phytoliths at several depths was used to make basic reconstructions of past vegetation and was linked with C-sequestration rates. The mean total C stock of all six sites was 232 Mg C ha(-1) (28-417 Mg C ha(-1) ), which equates to a soil C sequestration rate of 32 kg C ha(-1)  yr(-1) over 7300 years. Mean soil C sequestration rates over 34, 50 and 100 years were estimated by an equation regressing soil C sequestration rate against soil C accumulation interval, which was modeled to be 618, 483 and 332 kg C ha(-1)  yr(-1) , respectively. Such data allows for a deeper understanding in how much C could be sequestered in Miscanthus grasslands at different time scales. In Aso, tribe Andropogoneae (especially Miscanthus and Schizoachyrium genera) and tribe Paniceae contributed between 64% and 100% of soil C based on δ(13) C abundance. We conclude that the seminatural, C4 -dominated grassland system serves as an important C sink, and worthy of future conservation.


Subject(s)
Carbon/chemistry , Poaceae , Soil/chemistry , Japan
13.
J Basic Microbiol ; 52(4): 477-86, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22144290

ABSTRACT

Andisol in farmland located in Hokkaido, Japan, is known to actively flux nitrous oxide (N(2)O) during the spring to summer seasons. Using a culturing system which mimics farm soils, nitrous oxide (N(2)O) emission potentials of the soils or soil microorganisms were investigated. A total of thirty-three soil samples from the farmland showed high N(2)O production potential, of which the maximum level of N(2)O emission was 3.69 µg per ml of the cultured medium per day (ml(-1) d(-1)) in the assay system. However, only three eubacteria (Leptothrix sp., Paenibacillus sp., and Streptomyces sp.) were isolated as culturable N(2)O emitters among a total of 92 bacterial isolates and 2 fungi obtained from the assayed soil suspensions. N(2)O production from all the isolated N(2)O emitters was more active within a weakly acidic region (pH 4.5-5.0) than neutral regions. However, unlike N(2)O emitters isolated from tropical peat soils, they did not respond to supplemental 0.5% sucrose. In the acetylene inhibition assay for the evaluation of complete denitrification, Leptothrix sp. P3-15D and Streptomyces sp. M2-0C indicated that these culturable N(2)O emitters are not effective denitrifiers but weak N(2)O emitters in the Andisol. Conversely, Rhodococcus sp. that was isolated from the Andisol collected in another season using a KNO(3)-enriched plate, showed 3.2-fold higher N(2)O emission with 10% C(2) H(2). Instead of the culturable bacteria, it is probable that the N(2)O emitters in viable but non-culturable (VBNC) state or obligately anaerobic denitrifiers are the major contributors to N(2)O emission from the vitric Andisol.


Subject(s)
Bacteria/metabolism , Fungi/metabolism , Metagenome , Nitrous Oxide/metabolism , Soil Microbiology , Bacteria/classification , Bacteria/isolation & purification , Fungi/classification , Fungi/isolation & purification , Japan
14.
Appl Environ Microbiol ; 75(9): 2811-9, 2009 May.
Article in English | MEDLINE | ID: mdl-19286791

ABSTRACT

For evaluating N(2) fixation of diazotrophic bacteria, nitrogen-poor liquid media supplemented with at least 0.5% sugar and 0.2% agar are widely used for acetylene reduction assays. In such a soft gel medium, however, many N(2)-fixing soil bacteria generally show only trace acetylene reduction activity. Here, we report that use of a N(2) fixation medium solidified with gellan gum instead of agar promoted growth of some gellan-preferring soil bacteria. In a soft gel medium solidified with 0.3% gellan gum under appropriate culture conditions, bacterial microbiota from boreal forest bed soils and some free-living N(2)-fixing soil bacteria isolated from the microbiota exhibited 10- to 200-fold-higher acetylene reduction than those cultured in 0.2% agar medium. To determine the N(2) fixation-activating mechanism of gellan gum medium, qualitative differences in the colony-forming bacterial components from tested soil microbiota were investigated in plate cultures solidified with either agar or gellan gum for use with modified Winogradsky's medium. On 1.5% agar plates, apparently cryophilic bacterial microbiota showed strictly distinguishable microbiota according to the depth of soil in samples from an eastern Siberian Taiga forest bed. Some pure cultures of proteobacteria, such as Pseudomonas fluorescens and Burkholderia xenovorans, showed remarkable acetylene reduction. On plates solidified with 1.0% gellan gum, some soil bacteria, including Luteibacter sp., Janthinobacterium sp., Paenibacillus sp., and Arthrobacter sp., uniquely grew that had not grown in the presence of the same inoculants on agar plates. In contrast, Pseudomonas spp. and Burkholderia spp. were apparent only as minor colonies on the gellan gum plates. Moreover, only gellan gum plates allowed some bacteria, particularly those isolated from the shallow organic soil layer, to actively swarm. In consequence, gellan gum is a useful gel matrix to bring out growth potential capabilities of many soil diazotrophs and their consortia in communities of soil bacteria.


Subject(s)
Acetylene/metabolism , Bacteria/metabolism , Bacterial Physiological Phenomena , Nitrogen Fixation , Soil Microbiology , Bacteria/classification , Bacteria/isolation & purification , Colony Count, Microbial , Culture Media/chemistry , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Molecular Sequence Data , Oxidation-Reduction , Polysaccharides, Bacterial/metabolism , Sequence Analysis, DNA , Siberia , Trees
15.
Environ Monit Assess ; 137(1-3): 251-60, 2008 Feb.
Article in English | MEDLINE | ID: mdl-17503203

ABSTRACT

River water quality was evaluated with respect to eutrophication and land use during spring snowmelt and summer base flow periods in Abashiri (mixed cropland-livestock farming) and Okoppe (grassland-based dairy cattle farming), eastern Hokkaido, Japan. Water from rivers and tributaries was sampled during snowmelt and summer base flow periods in 2005, and river flow was measured. Total N (TN), NO(3)-N, and Si concentrations were determined using standard methods. Total catchment and upland areas for each sampling site were determined with ArcGIS hydrology modeling software and 1:25,000-scale digital topographic maps. Specific discharge was significantly higher during snowmelt than during base flow. In both areas, TN concentrations increased, whereas Si concentrations decreased, with increased specific discharge, and were significantly higher during snowmelt. The Si:TN mole ratio decreased to below or close to the threshold value for eutrophication (2.7) in one-third of sites during snowmelt. River NO(3)-N concentrations during base flow were significantly and positively correlated with the proportion of upland fields in the catchment in both the Abashiri (r = 0.88, P < 0.001) and Okoppe (r = 0.43, P < 0.01) areas. However, the regression slope, defined as the impact factor (IF) of water quality, was much higher in Abashiri (0.025) than in Okoppe (0.0094). The correlations were also significantly positive during snowmelt in both areas, but IF was four to eight times higher during snowmelt than during base flow. Higher discharge of N from upland fields and grasslands during snowmelt and the resulting eutrophication in estuaries suggest that nutrient discharge during snowmelt should be taken into account when assessing and monitoring the annual loss of nutrients from agricultural fields.


Subject(s)
Agriculture , Rivers/chemistry , Snow , Water/standards , Environmental Monitoring , Japan , Nitrogen/analysis , Silicon Dioxide/analysis , Soil/analysis
16.
J Environ Sci (China) ; 20(11): 1312-22, 2008.
Article in English | MEDLINE | ID: mdl-19202870

ABSTRACT

Nitrous oxide (N2O) fluxes from soils were measured using the closed chamber method during the snow-free seasons (middle April to early November), for three years, in a total of 11 upland crop fields in central Hokkaido, Japan. The annual mean N2O fluxes ranged from 2.95 to 164.17 microgN/(m2 x h), with the lowest observed in a grassland and the highest in an onion field. The instantaneous N2O fluxes showed a large temporal variation with peak emissions generally occurring following fertilization and heavy rainfall events around harvesting in autumn. No clear common factor regulating instantaneous N2O fluxes was found at any of the study sites. Instead, instantaneous N2O fluxes at different sites were affected by different soil variables. The cumulative N2O emissions during the study period within each year varied from 0.15 to 7.05 kgN/hm2 for different sites, which accounted for 0.33% to 5.09% of the applied fertilizer N. No obvious relationship was observed between cumulative N2O emission and applied fertilizer N rate (P > 0.4). However, the cumulative N2O emission was significantly correlated with gross mineralized N as estimated by CO2 emissions from bare soils divided by C/N ratios of each soil, and with soil mineral N pool (i.e., the sum of gross mineralized N and fertilizer N) (P < 0.001).


Subject(s)
Ecosystem , Nitrous Oxide/analysis , Soil/analysis , Agriculture , Ammonia/analysis , Carbon/analysis , Crops, Agricultural , Fertilizers , Humidity , Japan , Nitrates/analysis , Nitrogen/analysis , Porosity , Regression Analysis , Seasons , Solubility , Temperature , Water
17.
Sci Total Environ ; 329(1-3): 61-74, 2004 Aug 15.
Article in English | MEDLINE | ID: mdl-15262158

ABSTRACT

This study was carried out to evaluate the quality of river water by analysis of land use in drainage basins and by estimating the N budgets. The drainage basins of Shibetsu River (Shibetsu area) and Bekkanbeushi River (Akkeshi area) in eastern Hokkaido, Japan were selected for a case study, and the evaluation of water quality was up-scaled to the regional level in Hokkaido by using the Arcview/GIS and statistical information. Water sampling was carried out in August 2001 and May 2002 in the Shibetsu and Akkeshi areas, respectively. The proportions of major land uses in drainage basins such as upland field, forest, urban area, wetland and wasteland for each sampling site were estimated by using topographic maps scaled at 1:25,000. The linear regression results showed that the correlation between NO3-N concentration and the proportion of upland in the drainage basins was highly and positively significant for both the Shibetsu area (r = 0.84, n = 57) and the Akkeshi area (r = 0.71, n = 73) at < 0.001 significance level. The regression coefficients or impact factors of river water quality were 0.015 and 0.0052 for the Shibetsu and Akkeshi areas, respectively. A comparison of these results with that of the previous study results in Hokkaido indicated that the impact factors were highest for intensive livestock farming areas (0.040), medium for mixed agriculture and livestock farming (0.020-0.030), and the lowest for grassland-based dairy cattle and horse farming areas (0.0052-0.015). The results of a simple regression analysis showed that the impact factors had a significant positive correlation with the cropland surplus N (r = 0.93, P < 0.01), chemical fertilizer N (r = 0.82, P < 0.05), and manure fertilizer N (r = 0.76, P < 0.05), which were estimated by using the N budget approach. Using the best-correlated regression model, impact factors for all cities, towns and villages of the Hokkaido region were estimated. The NO3-N concentrations for all major rivers in Hokkaido were predicted by multiplying the estimated impact factors by the proportion of uplands. The regression analysis indicated that the predicted NO3-N concentrations were significantly correlated (r = 0.62, P < 0.001, n = 203) with the measured NO3-N concentrations, reported previously. It can be concluded that estimating the proportions of upland fields in drainage basins, and calculating cropland surplus N enables us to predict river water quality with respect to NO3-N concentration.


Subject(s)
Animals, Domestic , Geographic Information Systems , Manure , Nitrogen/analysis , Water Pollutants/analysis , Animals , Fertilizers , Forecasting , Japan , Nitrogen/metabolism , Quality Control , Regression Analysis , Rivers , Water Supply
18.
J Environ Qual ; 32(6): 1965-77, 2003.
Article in English | MEDLINE | ID: mdl-14674518

ABSTRACT

To evaluate spatial variability of nitrous oxide (N2O) emissions and to elucidate their determining factors on a field-scale basis, N2O fluxes and various soil properties were evaluated in a 100- x 100-m onion (Allium cepa L.) field. Nitrous oxide fluxes were determined by a closed chamber method from the one-hundred 10- x 10-m plots. Physical (e.g., bulk density and water content), chemical (e.g., total N and pH), and biological (e.g., microbial biomass C and N) properties were determined from surface soil samples (0-0.1 m) of each plot. Geostatistical analysis was performed to examine spatial variability of both N2O fluxes and soil properties. Multivariate analysis was also conducted to elucidate relationships between soil properties and observed fluxes. Nitrous oxide fluxes were highly variable (average 331 microg N m(-2) h(-1), CV 217%) and were log-normally distributed. Log-transformed N2O fluxes had moderate spatial dependence with a range of >75 m. High N2O fluxes were observed at sites with relatively low elevation. Multivariate analysis indicated that an organic matter factor and a pH factor of the principal component analysis were the main soil-related determining factors of log-transformed N2O fluxes. By combining multivariate analysis with geostatistics, a map of predicted N2O fluxes closely matched the spatial pattern of measured fluxes. The regression equation based on the soil properties explained 56% of the spatially structured variation of the log-transformed N2O fluxes. Site-specific management to regulate organic matter content and water status of a soil could be a promising means of reducing N2O emissions from agricultural fields.


Subject(s)
Air Pollutants/analysis , Gases/analysis , Nitrous Oxide/analysis , Soil/analysis , Air Pollutants/chemistry , Environmental Monitoring , Gases/chemistry , Greenhouse Effect , Humans , Nitrous Oxide/chemistry , Onions/metabolism
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