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1.
J Cardiovasc Transl Res ; 12(5): 478-487, 2019 10.
Article in English | MEDLINE | ID: mdl-30963423

ABSTRACT

We have shown previously that during myocardial ischemia/reperfusion (MI/R), toll-like receptor 2 (TLR2) signaling regulates connexin 43 (Cx43) subcellular localization and function and dampens arrhythmia formation. We aimed to identify sites capable of TLR2-dependent redox modification within Cx43. Post-ischemic TLR2-/- or wild-type (WT) mouse hearts were analyzed by OxICAT. Cx43 was mutated to exclude redox modification and transfected into HL-1 cardiomyocytes (CM) that were challenged with a TLR2 agonist. We identified Cys260 of Cx43 to be susceptible to reversible oxidation MI/R; TLR2-/- leads to reduced H2O2 production in post-ischemic isolated mitochondria and subsequently reduced oxidation of Cx43 at Cys260. Cx43 was dephosphorylated in WT, while phosphorylation was preserved in TLR2-/-. Mutation of Cx43 (C260A) and lentiviral transfection in HL-1 CM accelerated pacemaker activity and reduced activity after TLR2 ligand stimulation. We here provide evidence for TLR2-dependent reversible oxidation of Cx43 at Cys260, which led to decreased Cx43 phosphorylation and affected CM pacemaker frequency and intercellular communication.


Subject(s)
Arrhythmias, Cardiac/metabolism , Connexin 43/metabolism , Heart Rate , Mitochondria, Heart/metabolism , Myocardial Reperfusion Injury/metabolism , Myocytes, Cardiac/metabolism , Toll-Like Receptor 2/metabolism , Action Potentials , Animals , Arrhythmias, Cardiac/genetics , Arrhythmias, Cardiac/pathology , Arrhythmias, Cardiac/physiopathology , Cell Communication , Cell Line , Connexin 43/deficiency , Connexin 43/genetics , Cysteine , Disease Models, Animal , Hydrogen Peroxide/metabolism , Mice, Inbred C57BL , Mice, Knockout , Mitochondria, Heart/pathology , Myocardial Reperfusion Injury/genetics , Myocardial Reperfusion Injury/pathology , Myocardial Reperfusion Injury/physiopathology , Myocytes, Cardiac/pathology , Oxidation-Reduction , Phosphorylation , Signal Transduction , Toll-Like Receptor 2/deficiency , Toll-Like Receptor 2/genetics
2.
Pain ; 158(7): 1354-1365, 2017 07.
Article in English | MEDLINE | ID: mdl-28394828

ABSTRACT

Chronic pain is accompanied by production of reactive oxygen species (ROS) in various cells that are important for nociceptive processing. Recent data indicate that ROS can trigger specific redox-dependent signaling processes, but the molecular targets of ROS signaling in the nociceptive system remain largely elusive. Here, we performed a proteome screen for pain-dependent redox regulation using an OxICAT approach, thereby identifying the small GTPase Rab7 as a redox-modified target during inflammatory pain in mice. Prevention of Rab7 oxidation by replacement of the redox-sensing thiols modulates its GTPase activity. Immunofluorescence studies revealed Rab7 expression to be enriched in central terminals of sensory neurons. Knockout mice lacking Rab7 in sensory neurons showed normal responses to noxious thermal and mechanical stimuli; however, their pain behavior during inflammatory pain and in response to ROS donors was reduced. The data suggest that redox-dependent changes in Rab7 activity modulate inflammatory pain sensitivity.


Subject(s)
Ganglia, Spinal/metabolism , Inflammation/metabolism , Pain/metabolism , Spinal Cord/metabolism , rab GTP-Binding Proteins/metabolism , Animals , Mice , Mice, Knockout , Proteomics , Reactive Oxygen Species/metabolism , Sensory Receptor Cells/metabolism , Signal Transduction/physiology , rab7 GTP-Binding Proteins
3.
ISME J ; 9(8): 1802-11, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25635641

ABSTRACT

Microorganisms show an astonishing versatility in energy metabolism. They can use a variety of different catabolic electron acceptors, but they use them according to a thermodynamic hierarchy, which is determined by the redox potential of the available electron acceptors. This hierarchy is reflected by a regulatory machinery that leads to the production of respiratory chains in dependence of the availability of the corresponding electron acceptors. In this study, we showed that the γ-proteobacterium Shewanella oneidensis produces several functional electron transfer chains simultaneously. Furthermore, these chains are interconnected, most likely with the aid of c-type cytochromes. The cytochrome pool of a single S. oneidensis cell consists of ca. 700 000 hemes, which are reduced in the absence on an electron acceptor, but can be reoxidized in the presence of a variety of electron acceptors, irrespective of prior growth conditions. The small tetraheme cytochrome (STC) and the soluble heme and flavin containing fumarate reductase FccA have overlapping activity and appear to be important for this electron transfer network. Double deletion mutants showed either delayed growth or no growth with ferric iron, nitrate, dimethyl sulfoxide or fumarate as electron acceptor. We propose that an electron transfer machinery that is produced irrespective of a thermodynamic hierarchy not only enables the organism to quickly release catabolic electrons to a variety of environmental electron acceptors, but also offers a fitness benefit in redox-stratified environments.


Subject(s)
Electron Transport/physiology , Energy Metabolism/physiology , Shewanella/physiology , Thermodynamics , Colony Count, Microbial , Cytochromes/physiology , Energy Metabolism/genetics , Oxidation-Reduction , RNA, Bacterial/analysis , Shewanella/genetics , Shewanella/growth & development , Succinate Dehydrogenase/physiology
4.
Free Radic Biol Med ; 78: 1-10, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25451644

ABSTRACT

To understand the role of reactive oxygen species (ROS) in oxidative stress and redox signaling it is necessary to link their site of generation to the oxidative modification of specific targets. Here we have studied the selective modification of protein thiols by mitochondrial ROS that have been implicated as deleterious agents in a number of degenerative diseases and in the process of biological aging, but also as important players in cellular signal transduction. We hypothesized that this bipartite role might be based on different generator sites for "signaling" and "damaging" ROS and a directed release into different mitochondrial compartments. Because two main mitochondrial ROS generators, complex I (NADH:ubiquinone oxidoreductase) and complex III (ubiquinol:cytochrome c oxidoreductase; cytochrome bc1 complex), are known to predominantly release superoxide and the derived hydrogen peroxide (H2O2) into the mitochondrial matrix and the intermembrane space, respectively, we investigated whether these ROS generators selectively oxidize specific protein thiols. We used redox fluorescence difference gel electrophoresis analysis to identify redox-sensitive targets in the mitochondrial proteome of intact rat heart mitochondria. We observed that the modified target proteins were distinctly different when complex I or complex III was employed as the source of ROS. These proteins are potential targets involved in mitochondrial redox signaling and may serve as biomarkers to study the generator-dependent dual role of mitochondrial ROS in redox signaling and oxidative stress.


Subject(s)
Electron Transport Complex III/metabolism , Electron Transport Complex I/metabolism , Mitochondria, Heart/metabolism , Mitochondria/metabolism , Oxidative Stress , Reactive Oxygen Species/metabolism , Sulfhydryl Compounds/metabolism , Animals , Electron Transport , Electrophoresis, Gel, Two-Dimensional , Male , Oxidation-Reduction , Rats , Rats, Wistar , Signal Transduction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
5.
Bioinformatics ; 31(3): 440-1, 2015 Feb 01.
Article in English | MEDLINE | ID: mdl-25301849

ABSTRACT

SUMMARY: We introduce nova, a software for the analysis of complexome profiling data. nova supports the investigation of the composition of complexes, cluster analysis of the experimental data, visual inspection and comparison of experiments and many other features. AVAILABILITY AND IMPLEMENTATION: nova is licensed under the Artistic License 2.0. It is freely available at http://www.bioinformatik.uni-frankfurt.de. nova requires at least Java 7 and runs under Linux, Microsoft Windows and Mac OS. CONTACT: ina.koch@bioinformatik.uni-frankfurt.de.


Subject(s)
Gene Expression Profiling , Pattern Recognition, Automated , Sequence Analysis, DNA/methods , Software , Cluster Analysis , Humans , Sequence Alignment
6.
Autophagy ; 10(11): 1937-52, 2014.
Article in English | MEDLINE | ID: mdl-25483963

ABSTRACT

Lipopolysaccharide (LPS)-induced activation of TLR4 (toll-like receptor 4) is followed by a subsequent overwhelming inflammatory response, a hallmark of the first phase of sepsis. Therefore, counteracting excessive innate immunity by autophagy is important to contribute to the termination of inflammation. However, the exact molecular details of this interplay are only poorly understood. Here, we show that PELI3/Pellino3 (pellino E3 ubiquitin protein ligase family member 3), which is an E3 ubiquitin ligase and scaffold protein in TLR4-signaling, is impacted by autophagy in macrophages (MΦ) after LPS stimulation. We noticed an attenuated mRNA expression of proinflammatory Il1b (interleukin 1, ß) in Peli3 knockdown murine MΦ in response to LPS treatment. The autophagy adaptor protein SQSTM1/p62 (sequestosome 1) emerged as a potential PELI3 binding partner in TLR4-signaling. siRNA targeting Sqstm1 and Atg7 (autophagy related 7), pharmacological inhibition of autophagy by wortmannin as well as blocking the lysosomal vacuolar-type H(+)-ATPase by bafilomycin A1 augmented PELI3 protein levels, while inhibition of the proteasome had no effect. Consistently, treatment to induce autophagy by MTOR (mechanistic target of rapamycin (serine/threonine kinase)) inhibition or starvation enhanced PELI3 degradation and reduced proinflammatory Il1b expression. PELI3 was found to be ubiquitinated upon LPS stimulation and point mutation of PELI3-lysine residue 316 (Lys316Arg) attenuated Torin2-dependent degradation of PELI3. Immunofluorescence analysis revealed that PELI3 colocalized with the typical autophagy markers MAP1LC3B/LC3B (microtubule-associated protein 1 light chain 3 ß) and LAMP2 (lysosomal-associated membrane protein 2). Our observations suggest that autophagy causes PELI3 degradation during TLR4-signaling, thereby impairing the hyperinflammatory phase during sepsis.


Subject(s)
Autophagy , Interleukin-1beta/metabolism , Ubiquitin-Protein Ligases/metabolism , Adenosine Triphosphatases/metabolism , Animals , Cell Line , Cytokines/metabolism , Immunity, Innate , Inflammation , Lipopolysaccharides/metabolism , Macrophages/metabolism , Mice , Naphthyridines/metabolism , Point Mutation , RNA, Messenger/metabolism , RNA, Small Interfering/metabolism , Sepsis/metabolism , Signal Transduction , Toll-Like Receptor 4/metabolism , Ubiquitin/metabolism
7.
Antioxid Redox Signal ; 21(18): 2483-97, 2014 Dec 20.
Article in English | MEDLINE | ID: mdl-24844655

ABSTRACT

AIMS: During sepsis, macrophages are alternatively activated toward an M2-like phenotype on contact with apoptotic cells (ACs) or their secretion products. Simultaneously, NADPH oxidase-dependent reactive oxygen species (ROS) formation is attenuated, thus contributing to immune paralysis. However, the exact mechanism remains elusive. Here, we provide mechanistic insights into diminished mRNA stability of the NADPH oxidase Nox2 on macrophage M2 polarization and therefore reduced ROS formation in sepsis. RESULTS: Murine J774A.1 macrophages were stimulated with conditioned medium (CM) of apoptotic T cells, which reduced Nox2 mRNA and protein expression, consequently decreasing ROS production. An mRNA pulldown approach coupled to mass spectrometry analysis identified the RNA-binding protein SYNCRIP attached to the Nox2 mRNA 3' untranslated region (3'UTR). The binding of SYNCRIP to the 3'UTR of Nox2 mRNA is attenuated after treatment with CM of apoptotic T cells, followed by Nox2 mRNA destabilization. In in vivo models of polymicrobial sepsis such as cecal ligation and puncture, SYNCRIP was strongly downregulated, which was associated with a decreased Nox2 expression in peritoneal macrophages. INNOVATION: Downregulation of SYNCRIP in macrophages after contact to material of ACs destabilized Nox2 mRNA and impaired ROS formation, thereby contributing to an M2 phenotype shift of macrophages in sepsis. CONCLUSION: M2 polarization of macrophages in sepsis results in an attenuated SYNCRIP binding to the 3'UTR of Nox2 mRNA, destabilizing Nox2 mRNA abundance and expression. Consequently, ROS formation needed to fight against recurrent infections is impaired. In conclusion, SYNCRIP-regulated Nox2 mRNA degradation mediates the hypoinflammatory phase of sepsis.


Subject(s)
Heterogeneous-Nuclear Ribonucleoproteins/genetics , Macrophages/metabolism , Membrane Glycoproteins/genetics , NADPH Oxidases/genetics , Sepsis/genetics , Animals , Apoptosis/genetics , Gene Expression Regulation , Heterogeneous-Nuclear Ribonucleoproteins/metabolism , Humans , Macrophages/pathology , Membrane Glycoproteins/metabolism , Mice , NADPH Oxidase 2 , NADPH Oxidases/metabolism , RNA Stability , RNA, Messenger/genetics , Reactive Oxygen Species/metabolism , Sepsis/metabolism , Sepsis/pathology , Signal Transduction
8.
Proc Natl Acad Sci U S A ; 111(14): 5207-12, 2014 Apr 08.
Article in English | MEDLINE | ID: mdl-24706851

ABSTRACT

Mitochondrial complex I is the largest and most complicated enzyme of the oxidative phosphorylation system. It comprises a number of so-called accessory subunits of largely unknown structure and function. Here we studied subunit NB4M [NDUFA6, LYR motif containing protein 6 (LYRM6)], a member of the LYRM family of proteins. Chromosomal deletion of the corresponding gene in the yeast Yarrowia lipolytica caused concomitant loss of the mitochondrial acyl carrier protein subunit ACPM1 from the enzyme complex and paralyzed ubiquinone reductase activity. Exchanging the LYR motif and an associated conserved phenylalanine by alanines in subunit NB4M also abolished the activity and binding of subunit ACPM1. We show, by single-particle electron microscopy and structural modeling, that subunits NB4M and ACPM1 form a subdomain that protrudes from the peripheral arm in the vicinity of central subunit domains known to be involved in controlling the catalytic activity of complex I.


Subject(s)
Acyl Carrier Protein/metabolism , Electron Transport Complex I/metabolism , Fungal Proteins/metabolism , Biocatalysis , Electron Spin Resonance Spectroscopy , Yarrowia/metabolism
9.
Biochim Biophys Acta ; 1837(6): 929-39, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24560811

ABSTRACT

An intriguing feature of mitochondrial complex I from several species is the so-called A/D transition, whereby the idle enzyme spontaneously converts from the active (A) form to the de-active (D) form. The A/D transition plays an important role in tissue response to the lack of oxygen and hypoxic deactivation of the enzyme is one of the key regulatory events that occur in mitochondria during ischaemia. We demonstrate for the first time that the A/D conformational change of complex I does not affect the macromolecular organisation of supercomplexes in vitro as revealed by two types of native electrophoresis. Cysteine 39 of the mitochondrially-encoded ND3 subunit is known to become exposed upon de-activation. Here we show that even if complex I is a constituent of the I+III2+IV (S1) supercomplex, cysteine 39 is accessible for chemical modification in only the D-form. Using lysine-specific fluorescent labelling and a DIGE-like approach we further identified two new subunits involved in structural rearrangements during the A/D transition: ND1 (MT-ND1) and 39kDa (NDUFA9). These results clearly show that structural rearrangements during de-activation of complex I include several subunits located at the junction between hydrophilic and hydrophobic domains, in the region of the quinone binding site. De-activation of mitochondrial complex I results in concerted structural rearrangement of membrane subunits which leads to the disruption of the sealed quinone chamber required for catalytic turnover.


Subject(s)
Electron Transport Complex I/chemistry , Amino Acid Sequence , Animals , Cattle , Cysteine/chemistry , Electron Transport Complex I/metabolism , Electrophoresis, Polyacrylamide Gel , Fluorescence , Lysine/chemistry , Mass Spectrometry , Molecular Sequence Data , NAD/chemistry , Oxidation-Reduction
10.
Antioxid Redox Signal ; 20(17): 2667-80, 2014 Jun 10.
Article in English | MEDLINE | ID: mdl-24206143

ABSTRACT

AIMS: The reaction of nitric oxide and nitrite-derived species with polyunsaturated fatty acids yields electrophilic fatty acid nitroalkene derivatives (NO2-FA), which display anti-inflammatory properties. Given that the 5-lipoxygenase (5-LO, ALOX5) possesses critical nucleophilic amino acids, which are potentially sensitive to electrophilic modifications, we determined the consequences of NO2-FA on 5-LO activity in vitro and on 5-LO-mediated inflammation in vivo. RESULTS: Stimulation of human polymorphonuclear leukocytes (PMNL) with nitro-oleic (NO2-OA) or nitro-linoleic acid (NO2-LA) (but not the parent lipids) resulted in the concentration-dependent and irreversible inhibition of 5-LO activity. Similar effects were observed in cell lysates and using the recombinant human protein, indicating a direct reaction with 5-LO. NO2-FAs did not affect the activity of the platelet-type 12-LO (ALOX12) or 15-LO-1 (ALOX15) in intact cells or the recombinant protein. The NO2-FA-induced inhibition of 5-LO was attributed to the alkylation of Cys418, and the exchange of Cys418 to serine rendered 5-LO insensitive to NO2-FA. In vivo, the systemic administration of NO2-OA to mice decreased neutrophil and monocyte mobilization in response to lipopolysaccharide (LPS), attenuated the formation of the 5-LO product 5-hydroxyeicosatetraenoic acid (5-HETE), and inhibited lung injury. The administration of NO2-OA to 5-LO knockout mice had no effect on LPS-induced neutrophil or monocyte mobilization as well as on lung injury. INNOVATION: Prophylactic administration of NO2-OA to septic mice inhibits inflammation and promotes its resolution by interfering in 5-LO-mediated inflammatory processes. CONCLUSION: NO2-FAs directly and irreversibly inhibit 5-LO and attenuate downstream acute inflammatory responses.


Subject(s)
Arachidonate 5-Lipoxygenase/metabolism , Fatty Acids, Unsaturated/metabolism , Pneumonia/pathology , Sepsis/pathology , Animals , Humans , Lipoxygenase Inhibitors/metabolism , Mice , Neutrophils/metabolism , Nitric Oxide/metabolism , Pneumonia/drug therapy , Pneumonia/etiology , Pneumonia/metabolism , Sepsis/complications , Sepsis/drug therapy , Sepsis/metabolism , Signal Transduction/genetics
11.
Free Radic Biol Med ; 65: 1398-1407, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24103565

ABSTRACT

Protein disulfide isomerase (PDI) and its homologs are oxidoreductases facilitating protein folding in the ER. Endo-PDI (also termed ERp46) is highly expressed in endothelial cells. It belongs to the PDI family but its physiological function is largely unknown. We studied the role of Endo-PDI in endothelial angiogenic responses. Stimulation of human umbilical vein endothelial cells (with TNFα (10ng/ml) increased ERK1/2 phosphorylation. This effect was largely attenuated by Endo-PDI siRNA, whereas JNK and p38 MAP kinase phosphorylation was Endo-PDI independent. Similarly, TNFα-stimulated NF-κB signaling determined by IκBα degradation as well as TNFα-induced ICAM expression was unaffected by Endo-PDI siRNA. The action of Endo-PDI was not mediated by extracellular thiol exchange or cell surface PDI as demonstrated by nonpermeative inhibitors and PDI-neutralizing antibody. Moreover, exogenously added PDI failed to restore ERK1/2 activation after Endo-PDI knockdown. This suggests that Endo-PDI acts intracellularly potentially by maintaining the Ras/Raf/MEK/ERK pathway. Indeed, knockdown of Endo-PDI attenuated Ras activation measured by G-LISA and Raf phosphorylation. ERK activation influences gene expression by the transcriptional factor AP-1, which controls MMP-9 and cathepsin B, two proteases required for angiogenesis. TNFα-stimulated MMP-9 and cathepsin B induction was reduced by silencing of Endo-PDI. Accordingly, inhibition of cathepsin B or Endo-PDI siRNA blocked the TNFα-stimulated angiogenic response in the spheroid outgrowth assays. Moreover ex vivo tube formation and in vivo Matrigel angiogenesis in response to TNFα were attenuated by Endo-PDI siRNA. In conclusion, our study establishes Endo-PDI as a novel, important mediator of AP-1-driven gene expression and endothelial angiogenic function.


Subject(s)
Human Umbilical Vein Endothelial Cells/enzymology , Neovascularization, Physiologic/physiology , Protein Disulfide-Isomerases/metabolism , Transcription Factor AP-1/genetics , Tumor Necrosis Factor-alpha/pharmacology , Angiogenesis Inducing Agents/antagonists & inhibitors , Angiogenesis Inducing Agents/pharmacology , Cathepsin B/antagonists & inhibitors , Cathepsin B/biosynthesis , Cell Adhesion Molecules/biosynthesis , Cell Adhesion Molecules/genetics , Cells, Cultured , Endoplasmic Reticulum , Enzyme Activation , Extracellular Signal-Regulated MAP Kinases/metabolism , Humans , I-kappa B Proteins , JNK Mitogen-Activated Protein Kinases/metabolism , MAP Kinase Signaling System , Matrix Metalloproteinase 9/biosynthesis , NADPH Oxidases , NF-KappaB Inhibitor alpha , Phosphorylation , Protein Disulfide-Isomerases/antagonists & inhibitors , Protein Disulfide-Isomerases/genetics , Protein Folding , RNA Interference , RNA, Small Interfering , Spheroids, Cellular , Thioredoxin-Disulfide Reductase , Tumor Necrosis Factor-alpha/antagonists & inhibitors , p38 Mitogen-Activated Protein Kinases/metabolism , ras Proteins/genetics
12.
Biochim Biophys Acta ; 1834(12): 2750-60, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24140568

ABSTRACT

Hypoxia inducible factors (HIFs) are important mediators of the cellular adaptive response during acute hypoxia. The role of HIF-1 and HIF-2 during prolonged periods of hypoxia, i.e. chronic hypoxia is less defined. Therefore, we used human THP-1 macrophages with a knockdown of either HIF-1α, HIF-2α, or both HIFα-subunits, incubated them for several days under hypoxia (1% O2), and analyzed responses to hypoxia using 2D-DIGE coupled to MS/MS-analysis. Chronic hypoxia was defined as a time point when the early but transient accumulation of HIFα-subunits and mRNA expression of classical HIF target genes returned towards basal levels, with a new steady state that was constant from 72h onwards. From roughly 800 spots, that were regulated comparing normoxia to chronic hypoxia, about 100 proteins were unambiguously assigned during MS/MS-analysis. Interestingly, a number of glycolytic proteins were up-regulated, while a number of inner mitochondrial membrane proteins were down-regulated independently of HIF-1α or HIF-2α. Chronic hypoxic conditions depleted the mitochondrial mass by autophagy, which occurred independently of HIF proteins. Macrophages tolerate periods of chronic hypoxia very well and adaptive responses occur, at least in part, independently of HIF-1α and/or HIF-2α and comprise mitophagy as a pathway of particular importance.


Subject(s)
Autophagy , Macrophages/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/biosynthesis , Mitophagy , Up-Regulation , Basic Helix-Loop-Helix Transcription Factors/biosynthesis , Basic Helix-Loop-Helix Transcription Factors/genetics , Cell Hypoxia/genetics , Cell Line, Tumor , Glycolysis/genetics , Humans , Hypoxia-Inducible Factor 1, alpha Subunit/biosynthesis , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Macrophages/pathology , Mitochondria/genetics , Mitochondria/pathology , Mitochondrial Proteins/genetics
13.
Cell Signal ; 25(12): 2762-8, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24036216

ABSTRACT

Macrophage polarization to an anti-inflammatory phenotype upon contact with apoptotic cells is a contributing hallmark to immune suppression during the late phase of sepsis. Although the peroxisome proliferator-activated receptor γ (PPARγ) supports this macrophage phenotype switch, it remains elusive how apoptotic cells activate PPARγ. Assuming that a molecule causing PPARγ activation in macrophages originates in the cell membrane of apoptotic cells we analyzed lipid rafts from apoptotic, necrotic, and living human Jurkat T cells which showed the presence of 5-lipoxygenase (5-LO) in lipid rafts of apoptotic cells only. Incubating macrophages with lipid rafts of apoptotic, but not necrotic or living cells, induced PPAR responsive element (PPRE)-driven mRuby reporter gene expression in RAW 264.7 macrophages stably transduced with a 4xPPRE containing vector. Experiments with lipid rafts of apoptotic murine EL4 T cells revealed similar results. To verify the involvement of 5-LO in activating PPARγ in macrophages, Jurkat T cells were incubated with the 5-LO inhibitor MK-866 prior to induction of apoptosis, which failed to induce mRuby expression. Similar results were obtained with lipid rafts of apoptotic EL4 T cells preexposed to the 5-LO inhibitors zileuton and CJ-13610. Interestingly, Jurkat T cells overexpressing 5-LO failed to activate PPARγ in macrophages, while their 5-LO overexpressing apoptotic counterparts did. Our results suggest that during apoptosis 5-LO gets associated with lipid rafts and synthesizes ligands that in turn stimulate PPARγ in macrophages.


Subject(s)
Apoptosis , Arachidonate 5-Lipoxygenase/immunology , Macrophages/immunology , PPAR gamma/immunology , Animals , Arachidonate 5-Lipoxygenase/metabolism , Cell Line , Humans , Jurkat Cells , Membrane Microdomains/immunology , Mice , Protein Transport , Reactive Oxygen Species/immunology
14.
Circ Res ; 113(12): 1320-30, 2013 Dec 06.
Article in English | MEDLINE | ID: mdl-24044949

ABSTRACT

RATIONALE: Endothelial cells in situ are largely quiescent, and their isolation and culture are associated with the switch to a proliferative phenotype. OBJECTIVE: To identify antiangiogenic microRNAs expressed by native endothelial cells that are altered after isolation and culture, as well as the protein targets that regulate responses to growth factors. METHODS AND RESULTS: Profiling studies revealed that miR-223 was highly expressed in freshly isolated human, murine, and porcine endothelial cells, but those levels decreased in culture. In primary cultures of endothelial cells, vascular endothelial cell growth factor and basic fibroblast growth factor further decreased miR-223 expression. The overexpression of precursor-miR-223 did not affect basal endothelial cell proliferation but abrogated vascular endothelial cell growth factor-induced and basic fibroblast growth factor-induced proliferation, as well as migration and sprouting. Inhibition of miR-223 in vivo using specific antagomirs potentiated postnatal retinal angiogenesis in wild-type mice, whereas recovery of perfusion after femoral artery ligation and endothelial sprouting from aortic rings from adult miR-223(-/y) animals were enhanced. MiR-223 overexpression had no effect on the growth factor-induced activation of ERK1/2 but inhibited the vascular endothelial cell growth factor-induced and basic fibroblast growth factor-induced phosphorylation of their receptors and activation of Akt. ß1 integrin was identified as a target of miR-223 and its downregulation reproduced the defects in growth factor receptor phosphorylation and Akt signaling seen after miR-223 overexpression. Reintroduction of ß1 integrin into miR-223-ovexpressing cells was sufficient to rescue growth factor signaling and angiogenesis. CONCLUSIONS: These results indicate that miR-223 is an antiangiogenic microRNA that prevents endothelial cell proliferation at least partly by targeting ß1 integrin.


Subject(s)
Endothelial Growth Factors/antagonists & inhibitors , Endothelial Growth Factors/physiology , Endothelium, Vascular/drug effects , Endothelium, Vascular/metabolism , Integrin beta1/metabolism , MicroRNAs/physiology , Neovascularization, Physiologic/genetics , Signal Transduction/genetics , Animals , Cells, Cultured , Drug Delivery Systems , Human Umbilical Vein Endothelial Cells , Humans , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Neovascularization, Physiologic/drug effects , Signal Transduction/drug effects , Swine
15.
Biochem Soc Trans ; 41(5): 1235-41, 2013 Oct.
Article in English | MEDLINE | ID: mdl-24059513

ABSTRACT

Macromolecular complexes are involved in a broad spectrum of cellular processes including protein biosynthesis, protein secretion and degradation, metabolism, DNA replication and repair, and signal transduction along with other important biological processes. The analysis of protein complexes in health and disease is important to gain insights into cellular physiology and pathophysiology. In the last few decades, research has focused on the identification and the dynamics of macromolecular complexes. Several techniques have been developed to isolate native protein complexes from cells and tissues to allow further characterization by microscopic and proteomic analysis. In the present paper, we provide a brief overview of proteomic methods that can be used to identify protein-protein interactions, focusing on recent developments to study the entire complexome of a biological sample.


Subject(s)
Multiprotein Complexes/isolation & purification , Protein Biosynthesis , Proteolysis , DNA Repair/genetics , DNA Replication/genetics , Humans , Multiprotein Complexes/analysis , Multiprotein Complexes/chemistry , Protein Interaction Maps
16.
J Proteomics ; 91: 358-74, 2013 Oct 08.
Article in English | MEDLINE | ID: mdl-23872087

ABSTRACT

Many questions concerning the molecular processes during biological aging remain unanswered. Since mitochondria are central players in aging, we applied quantitative two-dimensional difference gel electrophoresis (2D-DIGE) coupled to protein identification by mass spectrometry to study the age-dependent changes in the mitochondrial proteome of the fungus Podospora anserina - a well-established aging model. 67 gel spots exhibited significant, but remarkably moderate intensity changes. While typically the observed changes in protein abundance occurred progressively with age, for several proteins a pronounced change was observed at late age, sometimes inverting the trend observed at younger age. The identified proteins were assigned to a wide range of metabolic pathways including several implicated previously in biological aging. An overall decrease for subunits of complexes I and V of oxidative phosphorylation was confirmed by Western blot analysis and blue-native electrophoresis. Changes in several groups of proteins suggested a general increase in protein biosynthesis possibly reflecting a compensatory mechanism for increased quality control-related protein degradation at later age. Age-related augmentation in abundance of proteins involved in biosynthesis, folding, and protein degradation pathways sustain these observations. Furthermore, a significant decrease of two enzymes involved in the degradation of γ-aminobutyrate (GABA) supported its previously suggested involvement in biological aging. BIOLOGICAL SIGNIFICANCE: We have followed the time course of changes in protein abundance during aging of the fungus P. anserina. The observed moderate but significant changes provide insight into the molecular adaptations to biological aging and highlight the metabolic pathways involved, thereby offering new leads for future research.


Subject(s)
Fungal Proteins/metabolism , Gene Expression Regulation, Fungal , Mitochondrial Proteins/metabolism , Podospora/metabolism , Proteome/metabolism , Chromatography, Liquid , Oxidative Stress , Oxygen/chemistry , Phosphorylation , Proteomics , Tandem Mass Spectrometry , Time Factors , Trypsin/chemistry , Two-Dimensional Difference Gel Electrophoresis , gamma-Aminobutyric Acid/metabolism
17.
PLoS One ; 8(5): e63683, 2013.
Article in English | MEDLINE | ID: mdl-23704930

ABSTRACT

Mitochondrial cristae morphology is highly variable and altered under numerous pathological conditions. The protein complexes involved are largely unknown or only insufficiently characterized. Using complexome profiling we identified apolipoprotein O (APOO) and apolipoprotein O-like protein (APOOL) as putative components of the Mitofilin/MINOS protein complex which was recently implicated in determining cristae morphology. We show that APOOL is a mitochondrial membrane protein facing the intermembrane space. It specifically binds to cardiolipin in vitro but not to the precursor lipid phosphatidylglycerol. Overexpression of APOOL led to fragmentation of mitochondria, a reduced basal oxygen consumption rate, and altered cristae morphology. Downregulation of APOOL impaired mitochondrial respiration and caused major alterations in cristae morphology. We further show that APOOL physically interacts with several subunits of the MINOS complex, namely Mitofilin, MINOS1, and SAMM50. We conclude that APOOL is a cardiolipin-binding component of the Mitofilin/MINOS protein complex determining cristae morphology in mammalian mitochondria. Our findings further assign an intracellular role to a member of the apolipoprotein family in mammals.


Subject(s)
Apolipoproteins/metabolism , Cardiolipins/metabolism , Mammals/metabolism , Membrane Proteins/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Multiprotein Complexes/metabolism , Muscle Proteins/metabolism , Animals , Cattle , Down-Regulation , HeLa Cells , Humans , Mitochondria/ultrastructure , Mitochondria, Heart/metabolism , Mitochondria, Heart/ultrastructure , Mitochondrial Membranes/metabolism , Mitochondrial Membranes/ultrastructure , Oxygen Consumption , Protein Binding
18.
FEBS Lett ; 587(7): 867-72, 2013 Apr 02.
Article in English | MEDLINE | ID: mdl-23454639

ABSTRACT

Complex I is the only component of the eukaryotic respiratory chain of which no high-resolution structure is yet available. A notable feature of mitochondrial complex I is the so-called active/de-active conformational transition of the idle enzyme from the active (A) to the de-active, (D) form. Using an amine- and sulfhydryl-reactive crosslinker of 6.8Å length (SPDP) we found that in the D-form of complex I the ND3 subunit crosslinked to the 39 kDa (NDUFA9) subunit. These proteins could not be crosslinked in the A-form. Most likely, both subunits are closely located in the critical junction region connecting the peripheral hydrophilic domain to the membrane arm of the enzyme where the entrance path for substrate ubiquinone is and where energy transduction takes place.


Subject(s)
Cross-Linking Reagents/chemistry , Electron Transport Complex I/chemistry , Mitochondrial Proteins/chemistry , Protein Conformation , Amino Acid Sequence , Animals , Cattle , Cross-Linking Reagents/metabolism , Cysteine/chemistry , Cysteine/metabolism , Electron Transport , Electron Transport Complex I/genetics , Electron Transport Complex I/metabolism , Electrophoresis, Polyacrylamide Gel , Hydrophobic and Hydrophilic Interactions , Mass Spectrometry , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Molecular Sequence Data , Protein Structure, Tertiary , Protein Subunits/chemistry , Protein Subunits/genetics , Protein Subunits/metabolism , Substrate Specificity , Succinimides/chemistry , Succinimides/metabolism , Ubiquinone/chemistry , Ubiquinone/metabolism
19.
Circ Res ; 112(6): 924-34, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23362312

ABSTRACT

RATIONALE: Polarity proteins are involved in the apico-basal orientation of epithelial cells, but relatively little is known regarding their function in mesenchymal cells. OBJECTIVE: We hypothesized that polarity proteins also contribute to endothelial processes like angiogenesis. METHODS AND RESULTS: Screening of endothelial cells revealed high expression of the polarity protein Scribble (Scrib). On fibronectin-coated carriers Scrib siRNA (siScrib) blocked directed but not random migration of human umbilical vein endothelial cells and led to an increased number and disturbed orientation of cellular lamellipodia. Coimmunoprecipitation/mass spectrometry and glutathione S-transferase (GST) pulldown assays identified integrin α5 as a novel Scrib interacting protein. By total internal reflection fluorescence (TIRF) microscopy, Scrib and integrin α5 colocalize at the basal plasma membrane of endothelial cells. Western blot and fluorescence activated cell sorting (FACS) analysis revealed that silencing of Scrib reduced the protein amount and surface expression of integrin α5 whereas surface expression of integrin αV was unaffected. Moreover, in contrast to fibronectin, the ligand of integrin α5, directional migration on collagen mediated by collagen-binding integrins was unaffected by siScrib. Mechanistically, Scrib supported integrin α5 recycling and protein stability by blocking its interaction with Rab7a, its translocation into lysosomes, and its subsequent degradation by pepstatin-sensitive proteases. In siScrib-treated cells, reinduction of the wild-type protein but not of PSD95, Dlg, ZO-1 (PDZ), or leucine rich repeat domain mutants restored integrin α5 abundance and directional cell migration. The downregulation of Scrib function in Tg(kdrl:EGFP)(s843) transgenic zebrafish embryos delayed the angiogenesis of intersegmental vessels. CONCLUSIONS: Scrib is a novel regulator of integrin α5 turnover and sorting, which is required for oriented cell migration and sprouting angiogenesis.


Subject(s)
Cell Movement/physiology , Cell Polarity/physiology , Human Umbilical Vein Endothelial Cells/physiology , Integrin alpha5/metabolism , Membrane Proteins/physiology , Neovascularization, Physiologic/physiology , Tumor Suppressor Proteins/physiology , Animals , Cell Migration Assays , Cell Movement/drug effects , Endothelial Cells/physiology , Humans , Integrin alphaV/metabolism , Membrane Proteins/antagonists & inhibitors , Mice , RNA, Small Interfering/pharmacology , Tumor Suppressor Proteins/antagonists & inhibitors
20.
Toxicon ; 64: 96-105, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23319078

ABSTRACT

Integrins are receptors of the extracellular matrix (ECM), playing a vital role in pathophysiological processes. They bind to ECM ligands like collagens and can mediate wound healing as well as tumor metastasis and thrombosis, thus being a part of cell adhesion and migration as well as platelet aggregation. For this reason, identifying α2ß1 integrin-specific antagonists can assist in the development of drugs to treat tumor progression, angiogenesis, and cardiovascular diseases. Snake venoms have been shown to contain antagonists which target collagen-binding integrins. EMS16, rhodocetin, and VP12 are three toxins belonging to the C-type lectin-related protein family and have been proven to inhibit the α2ß1 integrin, specifically the α2 integrin A domain. To specifically isolate antagonists targeting the α2ß1 integrin A domain, we developed a protocol based on affinity chromatography. Using this novel approach, the toxin VP-i was isolated from Vipera palaestinae venom. We show that VP-i binds to the α2 integrin A domain and that it successfully inhibits adhesion of various cells to type I collagen as well as cell migration. Moreover, our results indicate that VP-i differs structurally from the previously purified VP12, although not functionally, and therefore is a further venom compound which can be utilized for drug development.


Subject(s)
Integrin alpha2beta1/antagonists & inhibitors , Platelet Aggregation Inhibitors/pharmacology , Viper Venoms/metabolism , Viperidae/metabolism , Animals , Cell Adhesion/drug effects , Cell Line, Tumor , Cell Movement/drug effects , Fibrosarcoma/drug therapy , Humans , Integrin alpha2beta1/metabolism , Platelet Aggregation/drug effects , Platelet Aggregation Inhibitors/analysis , Platelet Aggregation Inhibitors/metabolism , Viper Venoms/chemistry , Viper Venoms/toxicity
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