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1.
Neuroimage Clin ; 38: 103401, 2023.
Article in English | MEDLINE | ID: mdl-37060626

ABSTRACT

BACKGROUND: Deficits in cognition like working memory (WM) are highly prevalent symptoms related to major depressive disorder (MDD). Neuroimaging studies have described frontoparietal abnormalities in patients with MDD as a basis for these deficits. Based on research in healthy adults, it is hypothesized that increased physical fitness might be a protective factor for these deficits in MDD. However, the relationship between physical fitness and WM-related neural activity and performance has not been tested in MDD, to date. Understanding these associations could inform the development of physical exercise interventions in MDD. METHODS: Within a larger project, 111 (53female) MDD outpatients and 56 (34female) healthy controls performed an n-back task (0-, 1-, 2-, 3-back) during functional Magnetic Resonance Imaging. Physical fitness from a graded exercise test on a cycle ergometer was performed by 106 MDD patients. RESULTS: Patients showed reduced performance particularly at high loads of the n-back WM task and prolonged reaction times at all n-back loads. A whole-brain interaction analysis of group by WM load revealed reduced neural activity in six frontoparietal clusters at medium and high WM loads in MDD patients compared to healthy controls. Analysis of covariance within the MDD sample showed that physical fitness was associated with neural activity in right and left superior parietal lobules. Externally defined Regions of Interest confirmed this analysis. CONCLUSIONS: Results indicate frontoparietal hypoactivity in MDD at high demands, arguing for decreased WM capacity. We demonstrate a parietal fitness correlate which could be used to guide future research on effects of exercise on cognitive functioning in MDD.


Subject(s)
Depressive Disorder, Major , Memory, Short-Term , Adult , Humans , Depressive Disorder, Major/diagnostic imaging , Brain Mapping , Cognition , Magnetic Resonance Imaging , Physical Fitness
2.
Acta Psychiatr Scand ; 142(4): 326-336, 2020 10.
Article in English | MEDLINE | ID: mdl-32786038

ABSTRACT

OBJECTIVE: Obsessive-compulsive disorder (OCD) is a complex psychiatric disorder with a substantial genetic contribution. While the specific variants underlying OCD's heritability are still unknown, findings from genome-wide association studies (GWAS) corroborate the importance of common SNPs explaining the phenotypic variance in OCD. Investigating associations between the genetic liability for OCD, as reflected by a polygenic risk score (PRS), and potential endophenotypes of the disorder, such as the personality trait harm avoidance, may aid the understanding of functional pathways from genes to diagnostic phenotypes. METHODS: We derived PRS for OCD at several P-value thresholds based on the latest Psychiatric Genomics Consortium OCD GWAS (2688 cases, 7037 controls) in an independent sample of OCD patients (n = 180), their unaffected first-degree relatives (n = 108) and healthy controls (n = 200). Using linear regression, we tested whether these PRS are associated with the personality trait harm avoidance. RESULTS: Results showed that OCD PRS significantly predicted OCD status, with patients having the highest scores and relatives having intermediate scores. Furthermore, the genetic risk for OCD was associated with harm avoidance across the entire sample, and among OCD patients. As indicated by mediation analyses, harm avoidance mediated the association between the OCD PRS and OCD caseness. These results were observed at multiple P-value thresholds and persisted after the exclusion of patients with a current comorbid major depressive or anxiety disorder. CONCLUSION: Our findings support the polygenic nature of OCD and further validate harm avoidance as a candidate endophenotype and diathesis of OCD.


Subject(s)
Depressive Disorder, Major , Obsessive-Compulsive Disorder , Endophenotypes , Genome-Wide Association Study , Humans , Obsessive-Compulsive Disorder/epidemiology , Obsessive-Compulsive Disorder/genetics , Personality/genetics
4.
Acta Psychiatr Scand ; 135(4): 328-338, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28160276

ABSTRACT

OBJECTIVE: The etiology of obsessive-compulsive disorder (OCD) is assumed to involve interactions between genetically determined vulnerability factors and significant environmental features. Here, we aim to investigate how the personality trait harm avoidance and the experience of childhood adversities contribute to OCD. METHOD: A total of 169 patients with OCD, 157 healthy comparison subjects, and 57 unaffected first-degree relatives of patients with OCD participated in the study. Harm avoidance was assessed using the Temperament and Character Inventory, and the severity of childhood adversities was measured with the Childhood Trauma Questionnaire. RESULTS: Both patients with OCD and relatives showed elevated levels of harm avoidance compared to controls. Furthermore, patients exhibited significantly higher scores than relatives. This linear pattern was observed throughout all subscales of harm avoidance, and remained stable after controlling for the severity of depressive and obsessive-compulsive symptoms. With regard to childhood adversities, patients with OCD reported higher levels than relatives and controls. CONCLUSION: Our results provide further evidence for a diathesis-stress model of OCD. While patients and unaffected relatives share elevated levels of harm avoidance, supporting the role of harm avoidance as an endophenotype of OCD, a heightened severity of childhood adversity was only observed in patients. The assumed biological underpinnings of these findings are discussed.


Subject(s)
Family/psychology , Harm Reduction , Obsessive-Compulsive Disorder/psychology , Stress, Psychological/psychology , Adult , Child , Endophenotypes , Family Health , Fear/psychology , Female , Humans , Life Change Events , Male , Middle Aged , Personality Inventory , Psychiatric Status Rating Scales , Surveys and Questionnaires , Young Adult
6.
Nat Commun ; 7: 13540, 2016 11 21.
Article in English | MEDLINE | ID: mdl-27869196

ABSTRACT

In the presence of antigen and costimulation, T cells undergo a characteristic response of expansion, cessation and contraction. Previous studies have revealed that population-level reproducibility is a consequence of multiple clones exhibiting considerable disparity in burst size, highlighting the requirement for single-cell information in understanding T-cell fate regulation. Here we show that individual T-cell clones resulting from controlled stimulation in vitro are strongly lineage imprinted with highly correlated expansion fates. Progeny from clonal families cease dividing in the same or adjacent generations, with inter-clonal variation producing burst-size diversity. The effects of costimulatory signals on individual clones sum together with stochastic independence; therefore, the net effect across multiple clones produces consistent, but heterogeneous population responses. These data demonstrate that substantial clonal heterogeneity arises through differences in experience of clonal progenitors, either through stochastic antigen interaction or by differences in initial receptor sensitivities.


Subject(s)
CD8-Positive T-Lymphocytes/physiology , Clone Cells , Animals , Cell Division/physiology , Cell Proliferation , Cells, Cultured , Fluorescent Dyes , High-Throughput Screening Assays , Mice , Mice, Inbred Strains
7.
Eur J Neurol ; 23(5): 973-8, 2016 May.
Article in English | MEDLINE | ID: mdl-26915334

ABSTRACT

BACKGROUND AND PURPOSE: Deficits in cognition have been reported in Parkinson's disease (PD) already in the early and even in the pre-motor stages. Whilst substantia nigra hyperechogenicity measured by transcranial B-mode sonography (TCS) represents a strong PD marker and is associated with an increased risk for PD in still healthy individuals, its association with cognitive performance in prodromal PD stages is not well established. METHODS: Two different cohorts of healthy elderly individuals were assessed by TCS and two different neuropsychological test batteries covering executive functions, verbal memory, language, visuo-constructional function and attention. Cognitive performance was compared between individuals with hyperechogenicity (SN+) and without hyperechogenicity (SN-). RESULTS: In both cohorts, SN+ individuals performed significantly worse than the SN- group in tests assessing verbal memory (word list delayed recall P = 0.05, logical memory II P < 0.017). Significant differences in Mini-Mental State Examination score (cohort 1, P = 0.02) and executive function tests (cohort 2, Stroop Color-Word Reading, P = 0.004) could only be shown in one of the two cohorts. No between-group effects were found in other cognitive tests and domains. CONCLUSIONS: These results indicate that individuals with the PD risk marker SN+ perform worse in verbal memory compared to SN- independent of the assessment battery. Memory performance should be assessed in detail in individuals at risk for PD.


Subject(s)
Cognition/physiology , Executive Function/physiology , Memory/physiology , Substantia Nigra/diagnostic imaging , Ultrasonography, Doppler, Transcranial/methods , Aged , Attention/physiology , Female , Humans , Male , Middle Aged , Neuropsychological Tests
8.
Neuroimage ; 95: 69-79, 2014 Jul 15.
Article in English | MEDLINE | ID: mdl-24657779

ABSTRACT

Functional near-infrared spectroscopy (fNIRS) is an optical neuroimaging method that detects temporal concentration changes of oxygenated and deoxygenated hemoglobin within the cortex, so that neural activation can be inferred. However, even though fNIRS is a very practical and well-tolerated method with several advantages particularly in methodically challenging measurement situations (e.g., during tasks involving movement or open speech), it has been shown to be confounded by systemic compounds of non-cerebral, extra-cranial origin (e.g. changes in blood pressure, heart rate). Especially event-related signal patterns induced by dilation or constriction of superficial forehead and temple veins impair the detection of frontal brain activation elicited by cognitive tasks. To further investigate this phenomenon, we conducted a simultaneous fNIRS-fMRI study applying a working memory paradigm (n-back). Extra-cranial signals were obtained by extracting the BOLD signal from fMRI voxels within the skin. To develop a filter method that corrects for extra-cranial skin blood flow, particularly intended for fNIRS data sets recorded by widely used continuous wave systems with fixed optode distances, we identified channels over the forehead with probable major extra-cranial signal contributions. The averaged signal from these channels was then subtracted from all fNIRS channels of the probe set. Additionally, the data were corrected for motion and non-evoked systemic artifacts. Applying these filters, we can show that measuring brain activation in frontal brain areas with fNIRS was substantially improved. The resulting signal resembled the fMRI parameters more closely than before the correction. Future fNIRS studies measuring functional brain activation in the forehead region need to consider the use of different filter options to correct for interfering extra-cranial signals.


Subject(s)
Brain Mapping/methods , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Spectroscopy, Near-Infrared/methods , Adult , Algorithms , Brain/physiology , Female , Humans , Male , Memory, Short-Term/physiology , Young Adult
9.
Mol Psychiatry ; 16(5): 491-503, 2011 May.
Article in English | MEDLINE | ID: mdl-20308990

ABSTRACT

Attention-deficit/hyperactivity disorder (ADHD) is a common, highly heritable neurodevelopmental syndrome characterized by hyperactivity, inattention and increased impulsivity. To detect micro-deletions and micro-duplications that may have a role in the pathogenesis of ADHD, we carried out a genome-wide screen for copy number variations (CNVs) in a cohort of 99 children and adolescents with severe ADHD. Using high-resolution array comparative genomic hybridization (aCGH), a total of 17 potentially syndrome-associated CNVs were identified. The aberrations comprise 4 deletions and 13 duplications with approximate sizes ranging from 110 kb to 3 Mb. Two CNVs occurred de novo and nine were inherited from a parent with ADHD, whereas five are transmitted by an unaffected parent. Candidates include genes expressing acetylcholine-metabolizing butyrylcholinesterase (BCHE), contained in a de novo chromosome 3q26.1 deletion, and a brain-specific pleckstrin homology domain-containing protein (PLEKHB1), with an established function in primary sensory neurons, in two siblings carrying a 11q13.4 duplication inherited from their affected mother. Other genes potentially influencing ADHD-related psychopathology and involved in aberrations inherited from affected parents are the genes for the mitochondrial NADH dehydrogenase 1 α subcomplex assembly factor 2 (NDUFAF2), the brain-specific phosphodiesterase 4D isoform 6 (PDE4D6) and the neuronal glucose transporter 3 (SLC2A3). The gene encoding neuropeptide Y (NPY) was included in a ∼3 Mb duplication on chromosome 7p15.2-15.3, and investigation of additional family members showed a nominally significant association of this 7p15 duplication with increased NPY plasma concentrations (empirical family-based association test, P=0.023). Lower activation of the left ventral striatum and left posterior insula during anticipation of large rewards or losses elicited by functional magnetic resonance imaging links gene dose-dependent increases in NPY to reward and emotion processing in duplication carriers. These findings implicate CNVs of behaviour-related genes in the pathogenesis of ADHD and are consistent with the notion that both frequent and rare variants influence the development of this common multifactorial syndrome.


Subject(s)
Attention Deficit Disorder with Hyperactivity/genetics , DNA Copy Number Variations/genetics , Gene Dosage/genetics , Neuropeptide Y/genetics , Pedigree , Adolescent , Attention Deficit Disorder with Hyperactivity/pathology , Brain/blood supply , Brain/pathology , Child , Chromosome Mapping/methods , Chromosomes, Human, Pair 7/genetics , Cohort Studies , Comparative Genomic Hybridization/methods , Family Health , Female , Genome-Wide Association Study/methods , Humans , Image Processing, Computer-Assisted , Magnetic Resonance Imaging/methods , Male , Neuropeptide Y/blood , Oxygen/blood , Phenotype
10.
Neuroimage ; 35(2): 625-34, 2007 Apr 01.
Article in English | MEDLINE | ID: mdl-17258472

ABSTRACT

To validate the usefulness of a model-based analysis approach according to the general linear model (GLM) for functional near-infrared spectroscopy (fNIRS) data, a rapid event-related paradigm with an unpredictable stimulus sequence was applied to 15 healthy subjects. A parametric design was chosen wherein four differently graded contrasts of a flickering checkerboard were presented, allowing directed hypotheses about the rank order of the evoked hemodynamic response amplitudes. The results indicate the validity of amplitude estimation by three main findings (a) the GLM approach for fNIRS data is capable to identify human brain activation in the visual cortex with inter-stimulus intervals of 4-9 s (6.5 s average) whereas in non-visual areas no systematic activation was detectable; (b) the different contrast level intensities lead to the hypothesized rank order of the GLM amplitude parameters: visual cortex activation evoked by highest contrast>moderate contrast>lowest contrast>no stimulation; (c) analysis of null-events (no stimulation) did not produce any significant activation in the visual cortex or in other brain areas. We conclude that a model-based GLM approach delivers valid fNIRS amplitude estimations and enables the analysis of rapid event-related fNIRS data series, which is highly relevant in particular for cognitive fNIRS studies.


Subject(s)
Photic Stimulation , Spectroscopy, Near-Infrared , Visual Cortex/physiology , Adult , Female , Humans , Linear Models , Male
11.
Br J Cancer ; 85(10): 1527-34, 2001 Nov 16.
Article in English | MEDLINE | ID: mdl-11720440

ABSTRACT

HER2/neu-derived peptides inducing MHC class II-restricted CD4+ T helper lymphocyte (Th) responses, although critical for tumour rejection, are not thoroughly characterized. Here, we report the generation and characterization of CD4+ T cell clones specifically recognizing a HER-2/neu-derived peptide (776-788) [designated HER2(776-788)]. Such clones yielded specific proliferative and cytokine [gamma-interferon(IFN)-gamma] responses when challenged with autologous dendritic cells (DCs) loaded with HER2(776-788). By performing blocking studies with monoclonal antibodies (MAbs) and by using DCs from allogeneic donors sharing certain HLA-DR alleles, we found that HER2(776-788) is a promiscuous peptide presented, at least, by DRB5*0101, DRB1*0701 and DRB1*0405 alleles. One TCRV beta 6.7+ clone recognized the HLA-DRB5*0101+ FM3 melanoma cell line transfected with a full length HER-2/neu cDNA. Moreover, this clone recognized the HER-2/neu+ SKBR3 breast cancer cell line induced to express HLA-DR, thus demonstrating that HER2(776-788) represents a naturally processed and presented epitope. Our data demonstrate that helper peptide HER2(776-788) represents a promiscuous epitope binding to at least three HLA-DR alleles, thus offering a broad population coverage. The use of antigenic peptides presented by major histocompatibility complex (MHC) class II in addition to those presented by class I may improve the therapeutic efficacy of active immunization.


Subject(s)
Antigen Presentation , Antigens, Neoplasm/immunology , Epitopes, T-Lymphocyte/immunology , HLA-DR Antigens/physiology , Peptide Fragments/immunology , Receptor, ErbB-2/immunology , T-Lymphocytes, Cytotoxic/immunology , Cell Line , Cells, Cultured , Clone Cells , Humans , Interferon-gamma/biosynthesis , Lymphocyte Activation , Neoplasms/immunology , Peptides/immunology , Tumor Cells, Cultured
12.
Cancer Immunol Immunother ; 49(12): 671-8, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11258793

ABSTRACT

Annexin II is known to be over-expressed in different types of tumours. We show here that annexin II protein is expressed by melanoma cell lines in various amounts, consistent with previous findings that an annexin II (208-223) peptide could be eluted from isolated HLA-DR molecules of a constitutively MHC class II-positive melanoma line. T cells sensitized to annexin II (208-223) in vitro using peptide-pulsed autologous dendritic cells responded only to the lines which overexpressed annexin II, in a peptide-specific, HLA-DR-restricted fashion. These CD4+ T cells proliferated strongly and secreted large amounts of type 1 cytokines in response to annexin II (208-223) peptide or annexin II protein-positive melanoma cell lines. These results demonstrate that the annexin II (208-223) peptide, corresponding to a non-mutated sequence of a normal protein, induces antigen-specific T cells which can respond to melanoma cells over-expressing the annexin II molecule. This peptide may therefore be useful in immunotherapy for recruiting CD4+ type 1 helper cells active locally in the tumour environment.


Subject(s)
Annexin A2/immunology , Antibodies, Neoplasm/immunology , Antigen-Presenting Cells/immunology , CD4-Positive T-Lymphocytes/immunology , Dendritic Cells/immunology , Melanoma/immunology , Aged , Animals , Annexin A2/metabolism , Antigens, CD/metabolism , Blotting, Western , CHO Cells , Cricetinae , Enzyme-Linked Immunosorbent Assay , Female , Granulocyte-Macrophage Colony-Stimulating Factor/metabolism , Humans , Immunization , Interleukin-10/metabolism , Interleukin-4/metabolism , Melanoma, Experimental/immunology , Melanoma, Experimental/pathology , Neoplasm Proteins/immunology , Peptide Fragments/biosynthesis , T-Lymphocytes, Helper-Inducer/immunology , Tumor Cells, Cultured , Tumor Necrosis Factor-alpha/metabolism
13.
Crit Rev Oncog ; 11(2): 97-133, 2000.
Article in English | MEDLINE | ID: mdl-11005508

ABSTRACT

The current consensus of opinion has it that most or possibly all tumors, spontaneous as well as induced, are immunogenic, expressing antigens in a form recognizable by the host immune system. Accordingly, in order to progress, tumors have to evolve strategies for evading immune responses. The purpose of this review is to consider the current status of knowledge concerning these different tumor escape strategies. It represents an update of an article originally published in this journal in 1997 (Pawelec, Zeuthen, and Kiessling, 1997). Therefore, it focuses mostly on publications that have appeared since then, illustrating the impressive accumulation of new data since that time and the importance currently attributed to studies of tumor escape from the immune response.


Subject(s)
Antigens, Neoplasm/immunology , Clonal Anergy/immunology , Clonal Deletion/immunology , HLA Antigens/immunology , Interleukin-10/immunology , Tumor Escape/immunology , Animals , Dendritic Cells/immunology , HLA Antigens/metabolism , Humans , Immunization/methods , Interleukin-10/metabolism , Signal Transduction/immunology
14.
Blood ; 95(9): 2890-6, 2000 May 01.
Article in English | MEDLINE | ID: mdl-10779436

ABSTRACT

The HLA-DR-associated peptides from peripheral blood mononuclear cells of 2 patients with plasmacytoma and 1 with chronic myeloid leukemia were isolated, identified, and compared. Several were identified as derivatives of the defensin family. Defensins (or human neutrophil peptides [HNP]) are antimicrobial, cationic peptides of 29 to 35 amino acids in length and are the major constituents of the azurophilic granules of human neutrophils. Using peripheral blood cells from leukapheresis, containing about 90% of polymorphonuclear cells, we could identify HNP-1, -2, and -4 and propeptides of up to 49 amino acids in length, eluted from HLA class II molecules. Binding of isolated and synthetic defensin peptides to various HLA-DR alleles using an in vitro binding/competition assay based on size exclusion chromatography revealed that defensin may bind into the peptide-binding groove. In a T-cell competition assay, defensins were able to reduce the proliferation of an HLA-DR-restricted T-cell line after preincubation of stimulating cells (CHO-DRB1*0401 transfectants) with defensin. Therefore, binding of defensins might prevent T-cell recognition of HLA class II molecules expressed on different blood precursor cells (all of which are "nonprofessional" antigen-presenting cells) by blocking the HLA peptide-binding groove or, alternatively, might protect defensin-expressing cells from self-destruction. (Blood. 2000;95:2890-2896)


Subject(s)
Blood Proteins/immunology , HLA-DR Antigens/immunology , Hematopoietic Stem Cells/immunology , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/immunology , Neutrophils/immunology , Plasmacytoma/immunology , Proteins/immunology , alpha-Defensins , Amino Acid Sequence , Antigens, CD34/blood , Binding, Competitive , Chromatography, Gel , Defensins , Granulocyte Colony-Stimulating Factor/therapeutic use , HL-60 Cells , HLA-DR1 Antigen/immunology , Hematopoietic Stem Cell Mobilization , Humans , Leukapheresis , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/blood , Lymphocyte Activation , Molecular Sequence Data , Plasmacytoma/blood , Proteins/chemistry , Proteins/isolation & purification , T-Lymphocytes/immunology
15.
Cancer Immunol Immunother ; 47(1): 32-8, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9755876

ABSTRACT

In a search for potentially tumour-specific MHC-class-II-restricted antigens, the immunogenicity of endogenous peptides that had been eluted from HLA-DR molecules of the human melanoma cell line FM3 (HLA-DRB1*02x, DRB1*0401) was tested in vitro. Two 16-mers representing gp100 positions 44-59, and annexin II positions 208-223 bound well to isolated DRB1*0401 molecules and are discussed here. HLA-DR-matched normal donors' T cells were cultured with peptide-pulsed artificial antigen-presenting cells (CHO cells cotransfected with genes for HLA-DRB1*0401 and CD80 and coexpressing high levels of both human molecules). Specific sensitization was achieved against both peptides, as measured in assays of autocrine proliferation and interleukin-2 secretion. Moreover, responses to native autologous melanoma cells but not to autologous B cells were also observed. In view of the expression of fas by the activated T cells and of fas ligand by the melanoma cells, blockade of potential fas/ fas-ligand interactions was undertaken using monoclonal antibodies (mAb). The antagonistic fas-specific mAb M3, but not the fas agonist M33, caused a markedly enhanced T cell response to FM3 cells. These results demonstrate that synthetic peptide antigens are able to sensitize T cells in vitro for effective MHC-class-II-restricted recognition of melanoma cells.


Subject(s)
Annexin A2/immunology , Antibodies, Neoplasm/immunology , Histocompatibility Antigens Class II/pharmacology , Membrane Glycoproteins/immunology , Neoplasm Proteins/immunology , Animals , Antibody Specificity , CHO Cells/metabolism , Cricetinae , Humans , Immunization , Melanoma, Experimental/immunology , Melanoma, Experimental/pathology , Peptide Fragments/biosynthesis , Tumor Cells, Cultured , gp100 Melanoma Antigen
17.
Mol Cell Biol ; 14(4): 2516-24, 1994 Apr.
Article in English | MEDLINE | ID: mdl-8139554

ABSTRACT

This study addresses the effect of transcription on replication, using a system based on autonomously replicating plasmids in human cells. We added transcriptional elements from the human cytomegalovirus promoter/enhancer and the human beta-actin promoter to autonomously replicating plasmids based on human sequences and found that the transcriptional elements inhibited plasmid replication. Furthermore, conditional inhibition of plasmid replication was demonstrated by using a tetracycline-responsive promoter. We found that replication activity of plasmids carrying this promoter was inversely correlated with promoter activity. Replication activity was partially restored on plasmids when a transcriptional termination sequence was placed directly downstream of the promoter element. Transcriptional activity of the promoters and the efficacy of the terminator sequence were confirmed by using steady-state RNA analysis. These experiments suggest that transcription inhibits DNA replication on these plasmids and that the degree of inhibition is dependent on transcription strength. The possible significance of these results for chromosomal DNA replication are discussed.


Subject(s)
Cytomegalovirus/genetics , DNA Replication , Genes, Immediate-Early , Plasmids/metabolism , Transcription, Genetic , Actins/genetics , Cell Line , Chromosomes, Human , DNA/biosynthesis , DNA Replication/drug effects , DNA, Viral/biosynthesis , Enhancer Elements, Genetic , Humans , Kidney , Promoter Regions, Genetic/drug effects , Restriction Mapping , Terminator Regions, Genetic , Tetracycline/pharmacology
18.
Mol Cell Biol ; 11(4): 2263-72, 1991 Apr.
Article in English | MEDLINE | ID: mdl-1900922

ABSTRACT

We previously developed short-term and long-term assays for autonomous replication of DNA in human cells. This study addresses the requirements for replication in these assays. Sixty-two random human genomic fragments ranging in size from 1 to 21 kb were cloned in a prokaryotic vector and tested for their replication ability in the short-term assay. We found a positive correlation between replication strength and fragment length, indicating that large size is favored for efficient autonomous replication in human cells. All large fragments replicated efficiently, suggesting that signals which can direct the initiation of DNA replication in human cells are either very abundant or have a low degree of sequence specificity. Similar results were obtained in the long-term assay. We also used the same assays to test in human cells a random series of fragments derived from Escherichia coli chromosomal DNA. The bacterial fragments supported replication less efficiently than the human fragments in the short-term and long-term assays. This result suggests that while the sequence signals involved in replication in human cells are found frequently in human DNA, they are uncommon in bacterial DNA.


Subject(s)
Cinnamates , DNA Replication , DNA/chemistry , Animals , Cell Line , DNA/biosynthesis , DNA, Bacterial/biosynthesis , DNA, Bacterial/chemistry , Haplorhini , Humans , Hygromycin B/analogs & derivatives , Hygromycin B/pharmacology , Nucleic Acid Hybridization , Plasmids , Species Specificity
19.
Mutat Res ; 220(2-3): 125-32, 1989.
Article in English | MEDLINE | ID: mdl-2538736

ABSTRACT

Shuttle vectors based on Epstein-Barr virus (EBV) replicate autonomously in the nuclei of human cells. These vectors represent reasonable models for chromosomes, have low background mutation frequencies, and have been useful for studying induced mutation in human cells. Two improvements in the EBV vector system are discussed. Attempts are described to increase vector copy number per cell by using a limited period of replication driven by the simian virus 40 (SV40) origin of replication. Isolation of human sequences that can replace the viral origin of replication in providing for autonomous replication of the vectors is also described. These improvements are leading toward shuttle vectors that are more efficient and more closely resemble authentic chromosomes.


Subject(s)
Genetic Vectors , Herpesvirus 4, Human/genetics , Mutagenicity Tests/methods , Cells, Cultured , DNA Replication , Humans , Recombination, Genetic , Selection, Genetic , Transfection , Virus Replication
20.
J Virol ; 62(10): 3738-46, 1988 Oct.
Article in English | MEDLINE | ID: mdl-2843671

ABSTRACT

We have increased the copy number of Epstein-Barr virus vectors that also carry the origin of replication of simian virus 40 (SV40) by providing a transient dose of SV40 T antigen. T antigen was supplied in trans by transfection of a nonreplicating plasmid which expresses T antigen into cells carrying Epstein-Barr virus-SV40 vectors. A significant increase in vector copy number occurred over the next few days. We also observed a high frequency of intramolecular recombination when the vector carried a repeat segment in direct orientation, but not when the repeat was in inverted orientation or absent. Furthermore, by following the mutation frequency for a marker on the vector after induction of SV40 replication, it was determined that SV40 replication generates a detectable increase in the deletion frequency but no measurable increase in the frequency of point mutations.


Subject(s)
Gene Amplification , Genetic Vectors , Herpesvirus 4, Human/genetics , Simian virus 40/genetics , Virus Replication , Antigens, Polyomavirus Transforming/genetics , Cell Line , DNA Replication , DNA, Viral/biosynthesis , DNA, Viral/genetics , Densitometry , Herpesvirus 4, Human/physiology , Humans , Mutation , Nucleic Acid Hybridization , Plasmids , Simian virus 40/physiology , Transfection
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