Hepatozoon Miller, 1908 parasites in the Colubridae snakes Clelia clelia (Daudin, 1803) and Drymarchon corais (Boie, 1827) from the Eastern Amazonia.

Based on the genetic, morphological, and morphometric data of blood gamonts, we identified Hepatozoon parasites in colubrid snakes sampled in the Eastern Amazon region. Hepatozoon trigeminum was detected in the mussurana snake Clelia clelia and exhibited wide and elongated gamonts (mean dimensions: 14.25±0.65 × 4.31±0.43 µm) with an evident parasitophorous vacuole. Hepatozoon odwyerae sp. nov. was described in the indigo snake Drymarchon corais, whose gamonts have elongated and thin bodies (mean dimensions: 13.41±0.79 × 3.72±0.35 µm) with one end more tapered than the other. Phylogenetic analyses, based on the amplification of a 441 bp fragment of the 18S rRNA gene, revealed that the novel sequences of Hepatozoon spp. from our study were closely related to hemogregarine lineages found in lizards and snakes from Brazil, forming a well-supported monophyletic clade with them. The present study provides the first species description of Hepatoozon in D. corais and a new record of a host species for C. clelia using the integrated taxonomic data. We also highlight the importance of further investigations into the diversity of Hepatozoon in snakes, a rich but underestimated group of parasites, especially in the Amazonian biome.

Multilocus approach reveals distinct evolutionary units of the South American apapa Pellona flavipinnis (Valenciennes, 1837) (Clupeiformes, Pristigasteridae).

The discovery and characterization of cryptic diversity is important for conservation and management, especially for ichthyofauna, whose diversity is underestimated and understudied. Cryptic diversity is especially common in widely distributed species, and Pellona flavipinnis is one such species. Thus, the aim of the present study was to investigate and test whether P. flavipinnis harbours cryptic diversity. In this study we used the COI and control region sequences and microsatellite loci of 86-114 specimens from 11-12 locations throughout the Amazon basin, depending on the molecular marker used. We also included two COI GenBank sequences from the type locality of the species, the Paraná River. The results from COI sequences showed that P. flavipinnis from the Amazon basin presented two spatially structured lineages differentiated from P. flavipinnis from the Paraná River by 10.6%-9.8% (depending on the lineages) and 45 mutational steps. The genetic distance between the Amazon lineages was 2.4% using COI, with high population differentiation values (ФST = 0.8686 and ФST = 0.8483 for COI and control region, respectively). Among the five species delimitation methods employed, three indicated two lineages in P. flavipinnis in the Amazon basin, and all five methods indicated that the Amazonian lineages are different from that of Paraná. Results from microsatellite loci also showed that P. flavipinnis from the Amazon basin is composed of two evolutionary units. The results of 13 morphometric measurements indicated that there are no differences in shape between the P. flavipinnis lineages in the Amazon basin. The present findings suggest that there are two sympatric lineages of P. flavipinnis in the Amazon basin.

Phylogenetic analysis of chelonian hemogregarines reveals shared species among the Amazonian freshwater turtle Podocnemis spp. and provides a description of two new species of Haemogregarina.

This study describes two new species of the genus Haemogregarina living in the Amazonian freshwater turtles Podocnemis expansa and Podocnemis sextuberculata. Haemogregarina species isolated from P. expansa have been characterized by the presence of encapsulated, folded immature gamonts, with the parasitophorous vacuole and fragmented chromatin located in the central region. In Haemogregarina found in P. sextuberculata, curved immature gamonts were observed inside a parasitophorous vacuole, with small, slightly arched meronts with rounded nuclei, and mature gamonts with trapezoid-shaped condensed nuclei. The novel 18S rRNA sequences obtained in this study clustered within a well-supported clade composed of hemogregarines isolated from other neotropical freshwater turtles from the families Podocnemididae and Geoemydidae. The hemogregarines found in this study were compared to Haemogregarina podocnemis from Podocnemis unifilis and Haemogregarina sp. from Podocnemis expansa, based on morphological, morphometric, and molecular data. The analysis supports the new species Haemogregarina karaja sp. nov. isolated from P. expansa and Haemogregarina embaubali sp. nov. found in P. sextuberculata.

Correction: Four new species of Pristimantis Jiménez de la Espada, 1870 (Anura: Craugastoridae) in the eastern Amazon.

[This corrects the article DOI: 10.1371/journal.pone.0229971.].

Four new species of Pristimantis Jiménez de la Espada, 1870 (Anura: Craugastoridae) in the eastern Amazon.

The Pristimantis genus (Anura: Craugastoridae) is the most diverse among all vertebrates with 531 described species. The highest diversity occurs in Ecuador (215 species), followed by Colombia (202), Peru (139), Venezuela (60), Brazil (30), Bolivia (17), Guyana (6) Suriname and French Guiana (5). The genus is divided into 11 species groups. Of these, the P. conspicillatus group (containing 34 species), distributed in extreme southeastern Costa Rica, Isla Taboga (Panama), northern South America (from Colombia to eastern Guyana), south Bolivia, and is the best represented in Brazil (16 species). The main characteristics of this group are the tympanic membrane and tympanic annulus distinct (except in P. johannesdei); dorsum smooth or shagreen; dorsal lateral fold present or absent; usually smooth belly, but may be weakly granular in some species; toe V slightly larger than the toe III. Most of the taxonomic inconsistencies in species of Pristimantis could be due to its much conserved morphology and the lack of comprehensive taxonomic evaluations. Thus, an ongoing challenge for taxonomists dealing with the Pristimantis genus is the ubiquitous abundance of cryptic species. In this context, accurate species delimitation should integrate evidences of morphological, molecular, bioacoustics and ecological data, among others. Based on an integrative taxonomy perspective, we utilize morphological, molecular (mtDNA) and bioacoustic evidence to describe four new species of the Pristimantis conspicillatus group from the eastern Amazon basin. Pristimantis giorgii sp. nov. is known from the Xingu/Tocantins interfluve and can be distinguished from the other Pristimantis species of the region by presenting discoidal fold, dorsolateral fold absent, vocalization composed of three to four notes and genetic distance of 7.7% (16S) and 14.8% (COI) from P. latro, the sister and sympatric species with respect P. giorgii sp. nov.. Pristimantis pictus sp. nov. is known to the northern Mato Grosso state, Brazil, and can be distinguished from the other species of Pristimantis by presenting the posterior surface of the thigh with light yellow patches on a brown background, also extending to the inguinal region, vocalization consisting of four to five notes and a genetic distance of 11.6% (16S) and 19.7% (COI) from P. pluvian sp. nov., which occurs in sympatry. Pristimantis pluvian sp. nov. is known to the northern Mato Grosso state, Brazil, and may be distinguished from the other Pristimantis species by having a posterior surface of the thigh reddish and vocalization composed of two notes. Pristimantis moa sp. nov. is known to the northern Tocantins state and southwestern Maranhão state. This species can be distinguished from the other Pristimantis species by possessing slightly perceptible canthal stripe, external thigh surface with dark yellow spots on brown background, vocalization consisting of three to five notes and genetic distance of 2.3-11.7 (16S) and 10.5-23.1 (COI) for the new Pristimantis species of this study.

Pristimantis in the Eastern Brazilian Amazon: DNA barcoding reveals underestimated diversity in a megadiverse genus.

The genus Pristimantis has the highest species diversity among all terrestrial vertebrates, with most species observed in the Andean region and the Guiana Shield. Even with the recent description of a new species, only P. latro, P. dundeei and P. zimmermanae occur in the south of the Amazon River. The lack of taxonomists specialized in the field leads to the propagation of dubious terminologies (e.g. Pristimantis sp1, Pristimantis sp2, P. aff. Fenestratus and P. gr. conspicillatus) or even misidentification of species, resulting in erroneous species distributions. In this study, we applied the Automatic Barcode Gap Discovery (ABGD) algorithm for the delimitation of candidate species and values of genetic distances using the mitochondrial marker Cytochrome Oxidase Subunit I (COI), proposed in the barcode methodology, where values greater than 10% are considered as indicative of different species. We found large genetic distances between P. latro and Pristimantis sp1 Unconfirmed Candidate Species - UCS1 (21%), and between P. altamazonicus and Pristimantis sp2 UCS2 (14%). The ABGD method recognized UCS1 and UCS2 as distinct species. Pristimantis sp. UCS1 and UCS2 in the east of the Brazilian Amazon are indicated as candidate species. We suggest greater sampling of Pristimantis sp. UCS1 and UCS2, integrating morphology and bioacoustics to solve the taxonomic status in the east of the Brazilian Amazon.

Eastern extension of the geographic range of Mico emiliae / Extensão oriental da distribuição geográfica de Mico emiliae

The distribution of the callitrichids inhabiting the Tapajós-Xingu interfluvium is still poorly understood, probably because of the limited number of studies in this remote region. Mico emiliae is a callitrichid endemic to Brazil, occurring between the Jamanxim and Teles Pires rivers, and Serra do Cachimbo in the west and Iriri River in the east, in the states of Pará and Mato Grosso. However, its current distribution is still uncertain. After ca. 430-km surveys in Serra do Pardo National Park, we successfully confirmed the occurrence of this species for the first time approximately 180 km east of its previously known eastern limit in Pará. Our records expand the distribution of M. emiliae to the left bank of the Xingu River, increasing the known extent of its occurrence by 83%.

A distribuição dos calitriquídeos que habitam o interflúvio Tapajós-Xingu ainda é pouco conhecida, provavelmente devido ao limitado número de estudos que ocorreram nesta região remota. Mico emiliae é um calitriquídeo endêmico do Brasil que ocorre na região limitada pelos rios Jamanxim e Teles Pires e pela Serra do Cachimbo ao oeste e Rio Iriri ao leste, nos estados do Pará e Mato Grosso. Entretanto, sua distribuição ainda é incerta. Após ca. 430 km de levantamentos no Parque Nacional da Serra do Pardo, nós confirmamos a ocorrência desta espécie pela primeira vez aproximadamente 180 km ao leste de seu limite oriental reconhecido no Pará. Esses novos registros expandem a distribuição de M. emiliae até a margem esquerda do rio Xingu, aumentando sua extensão de ocorrência em 83%.

A Pan-Amazonian species delimitation: high species diversity within the genus Amazophrynella (Anura: Bufonidae).

Amphibians are probably the most vulnerable group to climate change and climate-change associate diseases. This ongoing biodiversity crisis makes it thus imperative to improve the taxonomy of anurans in biodiverse but understudied areas such as Amazonia. In this study, we applied robust integrative taxonomic methods combining genetic (mitochondrial 16S, 12S and COI genes), morphological and environmental data to delimit species of the genus Amazophrynella (Anura: Bufonidae) sampled from throughout their pan-Amazonian distribution. Our study confirms the hypothesis that the species diversity of the genus is grossly underestimated. Our analyses suggest the existence of eighteen linages of which seven are nominal species, three Deep Conspecific Lineages, one Unconfirmed Candidate Species, three Uncategorized Lineages, and four Confirmed Candidate Species and described herein. We also propose a phylogenetic hypothesis for the genus and discuss its implications for historical biogeography of this Amazonian group.

A new species of Isospora Schneider, 1881 (Apicomplexa: Eimeriidae) from the twist-necked turtle Platemys platycephala (Schneider) (Testudines: Chelidae) in Brazil.

A new coccidian species of the genus Isospora Schneider 1881 (Apicomplexa, Eimeriidae) is reported from a single specimen of chelid turtle, Platemys platycephala (Schneider, 1792), obtained in a flooded area of the Amazonian municipality of Altamira, in Pará State, northern Brazil. The oöcysts of Isospora platemysi n. sp. are subspheroidal, 19.0-24.0 × 22.5-18.5 (22.6 × 20.8) µm in size [length/width ratio 1.0-1.1 (1.1)], with a colourless wall, 1.0-1.9 (1.4) wide, with two smooth layers; polar granule is present, oöcyst residuum and micropyle are both absent. The sporocyst is ovoidal, 10.0-12.1 × 8.0-10.0 (11.0 × 9.1) µm [length/width ratio 1.1-1.3 (1.2), with a knob-like Stieda body. Sub-Stieda body is present, rounded irregular-trapezoidal; para-Stieda body is absent. Sporocyst residuum is dispersed and composed of granules of differing sizes. This is only the fifth record of Isospora in chelonians, and the first report of a coccidian parasite of the genus Platemys.

Corrigenda: A new species of Pristimantis from eastern Brazilian Amazonia (Anura, Craugastoridae). ZooKeys 687: 101-129 (2017). https://doi.org/10.3897/zookeys.687.13221.

[This corrects the article DOI: 10.3897/zookeys.687.13221.].

A new species of Pristimantis from eastern Brazilian Amazonia (Anura, Craugastoridae).

In this study a new species of Pristimantis (Anura: Craugastoridae) of the P. conspicillatus species group is described. Pristimantis latrosp. n. is known only from the municipalities of Altamira, Anapu, Brasil Novo, Medicilândia, Uruará and Aveiro (Flona Tapajós, right bank of Tapajós river), in Pará state, Brazil. Morphologically, the new species distinguishes from known congeners in the group mainly by the presence of dorsal tubercles and absence of discoidal folds, smooth belly skin, as well as the presence of supernumerary tubercles on hands. The call of the new species consists of seven ascending notes, the first of which has a dominant frequency of 2635 Hz and the last 3272 Hz. Molecular analysis of the 16S mtDNA indicates a genetic distance of 8% to P. chiastonotus, its closet relative, and between 9% and 11% to populations of P. fenestratus.