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1.
ACG Case Rep J ; 10(5): e01048, 2023 May.
Article in English | MEDLINE | ID: mdl-37168504

ABSTRACT

Mpox is a rare infection caused by the zoonotic orthopoxvirus. We present the case of a 44-year-old man with HIV and a history of kidney transplant who presented with mpox and developed proctitis-associated bowel obstruction, urinary retention, and eosinophilia. Our case highlights potential gastrointestinal manifestations of severe mpox infection.

2.
ACS Chem Biol ; 12(8): 2149-2156, 2017 08 18.
Article in English | MEDLINE | ID: mdl-28661647

ABSTRACT

Laboratory-evolved RNAs bind a wide variety of targets and serve highly diverse functions, including as diagnostic and therapeutic aptamers. The majority of aptamers have been identified using in vitro selection (SELEX), a molecular evolution technique based on selecting target-binding RNAs from highly diverse pools through serial rounds of enrichment and amplification. In vitro selection typically yields multiple distinct motifs of highly variable abundance and target-binding affinities. The discovery of new aptamers is often limited by the difficulty of characterizing the selected motifs, because testing of individual sequences tends to be a tedious process. To facilitate the discovery of new aptamers within in vitro selected pools, we developed Apta-Seq, a multiplex analysis based on quantitative, ligand-dependent 2' acylation of solvent-accessible regions of the selected RNA pools, followed by reverse transcription (SHAPE) and deep sequencing. The method reveals, in a single sequencing experiment, the identity, structural features, and target dissociation constants for aptamers present in the selected pool. Application of Apta-Seq to a human genomic pool enriched for ATP-binding RNAs yielded three new aptamers, which together with previously identified human aptamers suggest that ligand-binding RNAs may be common in mammals.


Subject(s)
Aptamers, Nucleotide/chemistry , Aptamers, Nucleotide/genetics , SELEX Aptamer Technique , Base Sequence , Binding Sites , Cell Line , Humans , Sequence Alignment
3.
Org Lett ; 12(2): 360-3, 2010 Jan 15.
Article in English | MEDLINE | ID: mdl-20028082

ABSTRACT

A synthetic procedure toward 1,3-diazepane scaffolds of natural product-like complexity was developed for the construction of RNA-directed ligand libraries. A molecular building block was designed that combines the characteristics of RNA-binding natural products, including a high density of hydrogen bond donors and acceptors around a rigid, nonplanar scaffold with straightforward total-synthetic accessibility that permits extensive control over the chemical space. The synthesis of the 1,3-diazepane scaffold was achieved via an unprecedented cyanamide-induced rearrangement of epoxy-delta-lactams.


Subject(s)
Azepines/chemistry , Cyanamide/chemistry , Epoxy Compounds/chemistry , Lactams/chemistry , Hydrogen Bonding , Molecular Conformation , Stereoisomerism
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