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1.
Environ Pollut ; 350: 124002, 2024 Jun 01.
Article in English | MEDLINE | ID: mdl-38636834

ABSTRACT

Halogenated aromatic pollutants (HAPs) including polychlorinated dibenzo-p-dioxins/furans (PCDD/Fs), polychlorinated biphenyls (PCBs), polybrominated dibenzo-p-dioxins/furans (PBDD/Fs), and polybrominated diphenyl ethers (PBDEs) exhibit diverse toxicities and bio-accumulation in animals, thereby imposing risks on human via animal-derived food (ADF) consumption. Here we examined these HAPs in routine ADFs from South China and observed that PBDEs and PCBs showed statistically higher concentrations than PCDD/Fs and PBDD/Fs. PCDD/Fs and PCBs in these ADFs were mainly from the polluted feed and habitat of animals, except PCDD/Fs in egg, which additionally underwent selective biotransformation/progeny transfer after the maternal intake of PCDD/F-polluted stuff. PBDEs and PBDD/Fs were mostly derived from the extensive use of deca-BDE and their polluted environments. Significant interspecific differences were mainly observed for DL-PCBs and partly for PBDD/Fs and PBDEs, which might be caused by their distinct transferability/biodegradability in animals and the different living habit and habitat of animals. The dietary intake doses (DIDs) of these HAPs via ADF consumption were all highest for toddlers, then teenagers and adults. Milk, egg, and fish contributed most to the DIDs and risks for toddlers and teenagers, which results of several cities exceeded the recommended thresholds and illustrated noteworthy risks. Pork, fish, and egg were the top three risk contributors for adults, which carcinogenic and non-carcinogenic risks were both acceptable. Notably, PBDD/Fs showed the lowest concentrations but highest contributions to the total risks of these HAPs, thereby meriting continuous attention.


Subject(s)
Environmental Pollutants , Food Contamination , Halogenated Diphenyl Ethers , Polychlorinated Biphenyls , China , Animals , Humans , Food Contamination/analysis , Food Contamination/statistics & numerical data , Halogenated Diphenyl Ethers/analysis , Polychlorinated Biphenyls/analysis , Environmental Pollutants/analysis , Polychlorinated Dibenzodioxins/analysis , Risk Assessment , Dietary Exposure/statistics & numerical data , Adult , Child , Environmental Monitoring , Eggs/analysis
2.
Pharm Stat ; 2024 Apr 11.
Article in English | MEDLINE | ID: mdl-38603591

ABSTRACT

In pharmaceutical manufacturing, especially biologics and vaccines manufacturing, emphasis on speedy process development can lead to inadequate process development, which often results in less robust commercial manufacturing process after launch. Process performance index (Ppk) is a statistical measurement of the ability of a process to produce output within specification limits over a period of time. In biopharmaceutical manufacturing, progression in process development is based on Critical Quality Attributes meeting their specification limits, lacking insight into the process robustness. Ppk is typically estimated after 15-30 commercial batches at which point it may be too late/too complex to make process adjustments to enhance robustness. The use of Bayesian statistics, prior knowledge, and input from Subject matter experts (SMEs) offers an opportunity to make predictions on process capability during the development cycle. Developing a standard methodology to assess long term process capability at various stages of development provides several benefits: provides opportunity for early insight into process vulnerabilities thereby enabling resolution pre-licensure; identifies area of the process to prioritize and focus on during process development/process characterization (PC) using a data-driven approach; and ultimately results in higher process robustness/process knowledge at launch. We propose a Bayesian-based method to predict the performance of a manufacturing process at full manufacturing scale during the development and commercialization phase, before commercial data exists. Under Bayesian framework, limited development data for the process of interest at hand, data from similar products, general SME knowledge, and literature can be carefully formulated into informative priors. The implementation of the proposed approach is presented through two examples. To allow for continuous improvement during process development, we recommend to embed this approach of using predictive Ppk at pre-defined commercialization stage-gates, for example, at completion of process development, prior to and completion of PC, prior to technology transfer runs (Engineering/Process Performance Qualification, PPQ), and prior to commercial specification setting.

3.
Biotechnol J ; 19(1): e2300041, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37766672

ABSTRACT

During the COVID-19 pandemic, long development timelines typically associated with vaccines were challenged. The urgent need for a vaccine provided a strong driver to reevaluate existing vaccine development approaches. Innovative approaches to regulatory approval were realized, including the use of platform-based technology. In collaboration with the International AIDS Vaccine Initiative, Inc. (IAVI), Merck & Co., Inc., Rahway, NJ, USA rapidly advanced an investigational SARS-CoV-2 vaccine based on the recombinant vesicular stomatitis virus (rVSV) platform used for the Ebola vaccine ERVEBO (rVSV∆G-ZEBOV-GP). An rVSV∆G-SARS-CoV-2 vaccine candidate was generated using the SARS-CoV-2 spike protein to replace the VSV G protein. The purification process development for this vaccine candidate was detailed in this paper. Areas were highlighted where the ERVEBO platform process was successfully adopted and where additional measures were needed for the SARS-CoV-2 vaccine candidate. These included: (i) endonuclease addition directly into the bioreactor prior to harvest, (ii) inclusion of a core-shell chromatography step for improved purification, and (iii) incorporation of a terminal, sterile filtration step to eliminate the need for aseptic, closed processing. High infectious virus titers were achieved in Phase 3 clinical drug substance (>108 PFU mL-1 ), and process consistency was demonstrated across four large scale batches that were completed in 6 months from clone selection.


Subject(s)
COVID-19 , Ebola Vaccines , Ebolavirus , Hemorrhagic Fever, Ebola , Spike Glycoprotein, Coronavirus , Vesicular Stomatitis , Viral Vaccines , Animals , Humans , Ebola Vaccines/genetics , Hemorrhagic Fever, Ebola/prevention & control , COVID-19 Vaccines , SARS-CoV-2/genetics , Pandemics , COVID-19/prevention & control , Vesiculovirus , Vesicular stomatitis Indiana virus , Vaccines, Synthetic , Antibodies, Viral
4.
Int J Mol Sci ; 24(19)2023 Oct 03.
Article in English | MEDLINE | ID: mdl-37834318

ABSTRACT

Exogenous gibberellin treatment can promote early growth of grape fruit, but the underlying regulatory mechanisms are not well understood. Here, we show that VvDELLA2 directly regulates the activity of the VvCEB1 transcription factor, a key regulator in the control of cell expansion in grape fruit. Our results show that VvCEB1 binds directly to the promoters of cell expansion-related genes in grape fruit and acts as a transcriptional activator, while VvDELLA2 blocks VvCEB1 function by binding to its activating structural domain. The exogenous gibberellin treatment relieved this inhibition by promoting the degradation of VvDELLA2 protein, thus, allowing VvCEB1 to transcriptionally activate the expression of cell expansion-related genes. In conclusion, we conclude that exogenous GA3 treatment regulates early fruit expansion by affecting the VvDELLA-VvCEB1 interaction in grape fruit development.


Subject(s)
Fruit , Vitis , Fruit/metabolism , Gibberellins/pharmacology , Gibberellins/metabolism , Vitis/metabolism , Transcription Factors/metabolism , Promoter Regions, Genetic , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Growth Regulators/metabolism
5.
Environ Pollut ; 316(Pt 1): 120489, 2023 Jan 01.
Article in English | MEDLINE | ID: mdl-36273686

ABSTRACT

Polybrominated dibenzo-p-dioxin/furans (PBDD/Fs) and polychlorinated dibenzo-p-dioxin/furans (PCDD/Fs) in the environment are closely related to their precursors, brominated flame retardants (BFRs) and organochlorine pesticides (OCPs). However, their change trends following the regulation of BFRs and OCPs remain incompletely characterized. Here, we examined PBDD/Fs and PCDD/Fs in sediments from a historical hotspot for both BFRs and OCPs, namely the Pearl River Delta (PRD), China. PBDD/Fs showed ubiquity in these samples but significantly lower concentrations than PCDD/Fs. Spatially, the occurrence of PBDD/Fs was positively correlated with local development levels and sediments from highly urbanized/industrialized areas showed higher and increasing PBDD/F concentrations. Polybrominated diphenyl ether (PBDE)-related products/industries were the greatest PBDD/F contributors to the PRD, followed by bromo-phenol/benzene-related products/industries. PCDD/Fs in PRD sediments showed significant positive correlations with local grain planting area, yield, and pesticide consumption. The historical use of pentachlorophenol (PCP)/PCP-Na and biomass open-burning were the leading PCDD/F sources of the PRD agricultural/rural areas, where the concentrations and toxic equivalent quantities (TEQs) of PCDD/Fs in sediments changed very little over the past decade. Anthropogenic thermal processes involved in metallurgy, waste incineration, and vehicles were the greatest PCDD/F contributors in the PRD urban/industrial areas, where the PCDD/F concentrations in sediments almost doubled over the last decade. This finding indicates the increasing PCDD/F contributions of industrial and municipal activities in the PRD, despite the implementation of strict emission standards. Over sixty percent of the samples showed TEQs that surpassed the low-risk threshold specified for mammalian life by the U.S. EPA (2.5 pg TEQ g-1) and warrant continuous attention.


Subject(s)
Dioxins , Flame Retardants , Hydrocarbons, Chlorinated , Pesticides , Polychlorinated Dibenzodioxins , Dibenzofurans/analysis , Dibenzofurans, Polychlorinated , Dioxins/analysis , Environmental Monitoring , Flame Retardants/analysis , Furans/analysis , Mammals , Polychlorinated Dibenzodioxins/analysis
6.
Ecotoxicol Environ Saf ; 241: 113730, 2022 Aug.
Article in English | MEDLINE | ID: mdl-35691194

ABSTRACT

Severe pollution of polychlorinated dibenzo-p-dioxins/furans (PCDD/Fs) and their brominated analogues (PBDD/Fs) was frequently reported for the waters located near unregulated e-waste recycling areas. However, the migrations of these high-level dioxins via waterways and their potential threats to the lower reaches were seldom investigated. In this study, we analyzed PCDD/Fs and PBDD/Fs in 27 surficial sediments collected from the Lian River encompassing the Guiyu, China e-waste recycling zone, and investigated their distributions, sources, migration behaviors and risks. Both PCDD/Fs and PBDD/Fs in these sediments exhibited a spatial trend of Guiyu > Guiyu downriver > Guiyu upriver, illustrating that the Guiyu e-waste recycling activities were the uppermost dioxin contributors in this watershed. Sediments from different Guiyu villages demonstrated big gaps in PCDD/F concentrations and congener compositions, and the reason was attributed to the diverse e-waste recycling activities practiced in these villages. Sediments near the e-waste open-burning areas demonstrated extremely high PCDD/F concentrations and unique PCDD/F profiles featured by low-chlorinated PCDFs (tetra- to hexa-), which is quite different from the OCDD-dominant PCDD/F profile found in most of the Lian River sediments. The geographical distributions of PCDD/F concentrations and profiles illustrate that the substantial amount of PCDD/Fs in Guiyu sediments were mainly retained in local and vicinal water bodies. The principal component analysis (PCA) results further confirm that the high-level PCDD/Fs in Guiyu sediments exhibited quite limited translocations downstream and therefore exerted little influences on the lower reaches. Pentachlorophenol use in history, ceramic industry and vehicle exhaust were diagnosed as the major PCDD/F sources for most sediments of the Lian River. Total toxicity equivalent quantities (TEQs) of 70% of the Lian River sediments surpassed the high-risk limit specified for mammalian life by the U.S.EPA (25 pg TEQ g-1), and most of these sediments were from Guiyu and its near downstream, which merit continuous attention and necessary remediation measures.


Subject(s)
Benzofurans , Dioxins , Electronic Waste , Polychlorinated Dibenzodioxins , Benzofurans/analysis , China , Dibenzofurans/analysis , Dibenzofurans, Polychlorinated/analysis , Dioxins/analysis , Electronic Waste/analysis , Environmental Monitoring , Polychlorinated Dibenzodioxins/analysis
7.
Bioengineered ; 13(2): 4468-4480, 2022 02.
Article in English | MEDLINE | ID: mdl-35166175

ABSTRACT

Clinically, the effective treatment for patients with acute ischemic stroke (AIS) is very limited. Therefore, this paper aims to investigate the mechanism how astragalus polysaccharide (APS) exerts protective effect against AIS and provide a new method for the treatment of AIS. Cell surface antigen flow cytometry and immunofluorescence were used to identify M1 and M2 microglia. Western blot was used to evaluate the expression of associated protein. Oxygen-glucose deprivation (OGD) was used to simulate the effect of AIS on rat microglia. The middle cerebral artery occlusion (MCAO) model was established to simulate the effect of AIS in vivo. Evans blue dye (EBD) was used to evaluate the permeability of blood-brain barrier (BBB). Western blot and cell surface antigen flow cytometry results showed that APS promoted the M2 polarization of rat microglia by inhibiting the expression of purinergic receptor (P2X7R). APS reversed the effect of OGD on the polarization of rat microglia M1/ M2 by regulating P2X7R. APS reversed the effect of MCAO on the polarization of rat microglia M1/ M2 in vivo. Furthermore, APS inhibited the expression of P2X7R by promoting the degradation of adenosine triphosphate (ATP) in the cerebral cortex of MCAO rats. In addition, APS contributed to maintain the integrity of BBB. Summarily, APS can reduce brain injury by promoting the degradation of ATP in microglia and inhibiting the expression of P2X7R after AIS.


Subject(s)
Astragalus Plant , Ischemic Stroke/metabolism , Microglia , Polysaccharides , Protective Agents , Adenosine Triphosphate/metabolism , Animals , Blood-Brain Barrier/drug effects , Cell Line , Infarction, Middle Cerebral Artery/metabolism , Male , Microglia/cytology , Microglia/drug effects , Polysaccharides/chemistry , Polysaccharides/pharmacology , Protective Agents/chemistry , Protective Agents/pharmacology , Rats , Rats, Sprague-Dawley , Receptors, Purinergic P2X7/metabolism
8.
Int J Mol Sci ; 23(3)2022 Jan 28.
Article in English | MEDLINE | ID: mdl-35163425

ABSTRACT

Root-knot nematodes (RKNs) are devastating parasites that invade thousands of plants. In this study, five RKN effectors, which might interact with Prunussogdiana resistance protein PsoRPM3, were screened and identified. In situ hybridisation results showed that MiCal, MiGST_N_4, MiEFh and MiACPS are expressed in the subventral oesophageal glands (SvG), and MiTSPc hybridization signals are found in the dorsal esophageal gland (DG) of Meloidogyne incognita in the pre-J2. RT-qPCR data indicated that the expression of MiCal, MiGST_N_4, MiEFh, and MiACPS genes are highly expressed in M. incognita of pra-J2 and J3/J4 stages. The expression of MiTSPc increased significantly in the female stage of M. incognita. Moreover, all effectors found in this study localize in the cytoplasm and nucleus when transiently expressed in plant cells. In addition, MiGST_N_4, MiEFh, MiACPS and MiTSPc can elicit the ROS burst and strong hypersensitive response (HR), as well as significant ion leakage. Our data suggest that MiGST_N_4, MiEFh, MiACPS and MiTSPc effectors may be involved in triggering the immune response of the host plant.


Subject(s)
Helminth Proteins/genetics , Helminth Proteins/metabolism , Prunus/growth & development , Tylenchoidea/pathogenicity , Animals , Disease Resistance , Host-Parasite Interactions , Life Cycle Stages , Plant Proteins/metabolism , Prunus/metabolism , Prunus/parasitology , Sequence Analysis, DNA , Tissue Distribution , Tylenchoidea/genetics , Tylenchoidea/growth & development , Tylenchoidea/metabolism , Up-Regulation
9.
IEEE Trans Pattern Anal Mach Intell ; 44(7): 3386-3403, 2022 07.
Article in English | MEDLINE | ID: mdl-33571087

ABSTRACT

Despite the remarkable progress achieved in conventional instance segmentation, the problem of predicting instance segmentation results for unobserved future frames remains challenging due to the unobservability of future data. Existing methods mainly address this challenge by forecasting features of future frames. However, these methods always treat features of multiple levels (e.g., coarse-to-fine pyramid features) independently and do not exploit them collaboratively, which results in inaccurate prediction for future frames; and moreover, such a weakness can partially hinder self-adaption of a future segmentation prediction model for different input samples. To solve this problem, we propose an adaptive aggregation approach called Auto-Path Aggregation Network (APANet), where the spatio-temporal contextual information obtained in the features of each individual level is selectively aggregated using the developed "auto-path". The "auto-path" connects each pair of features extracted at different pyramid levels for task-specific hierarchical contextual information aggregation, which enables selective and adaptive aggregation of pyramid features in accordance with different videos/frames. Our APANet can be further optimized jointly with the Mask R-CNN head as a feature decoder and a Feature Pyramid Network (FPN) feature encoder, forming a joint learning system for future instance segmentation prediction. We experimentally show that the proposed method can achieve state-of-the-art performance on three video-based instance segmentation benchmarks for future instance segmentation prediction.


Subject(s)
Image Processing, Computer-Assisted , Neural Networks, Computer , Algorithms , Image Processing, Computer-Assisted/methods , Learning
10.
Environ Pollut ; 293: 118563, 2022 Jan 15.
Article in English | MEDLINE | ID: mdl-34838709

ABSTRACT

Polybrominated dibenzo-p-dioxins/furans (PBDD/Fs) and polychlorinated dibenzo-p-dioxins/furans (PCDD/Fs) share similar toxicities and thermal origins, e.g., municipal solid waste incinerator (MSWI). Recently, PBDD/Fs from MSWI attracted rising concern because their important precursors, i.e., brominated flame retardants (BFRs), were frequently found in various wastes for landfill or MSWI feedstock. So far, however, little is known about PBDD/Fs and their associated risks in the vicinal environments of MSWI. Here we analyzed PBDD/Fs and PCDD/Fs in 29 soil samples collected around a multiyear large-scale MSWI, and compared their spatial distributions, sources and risks. PBDD/Fs demonstrated comparable concentrations and toxic equivalent quantities (TEQs) to PCDD/Fs in these samples. Spatially, both the concentrations of PBDD/Fs and PCDD/Fs decreased outwards from the MSWI, and exhibited significant linear correlations with the distances from the MSWI in the southeast downwind soil, suggesting the influence of the MSWI on its vicinal soil environment. However, the existence of other dioxin sources concealed its influence beyond 6 km. PBDD/Fs in the soils were characterized by highly-brominated PBDFs, especially Octa-BDF, and their sources were diagnosed as the MSWI and diesel exhaust; PCDD/Fs, however, were dominated by highly-chlorinated PCDDs, particularly Octa-CDD, and were contributed individually or jointly by the MSWI, automobile exhaust and pentachlorophenol (PCP)/Na-PCP. The non-carcinogenic risks of dioxins in all the soil samples were acceptable, but their carcinogenic risks in 17% of the samples were unacceptable. These samples were all located close to the MSWI and highways, therefore, the land use of these two high-risk zones should be cautiously planed.


Subject(s)
Dioxins , Polychlorinated Dibenzodioxins , Dibenzofurans/analysis , Dioxins/analysis , Environmental Monitoring , Furans , Polychlorinated Dibenzodioxins/analysis , Soil , Solid Waste
11.
Mar Pollut Bull ; 173(Pt B): 113093, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34744012

ABSTRACT

Thirty-two surface sediment samples, collected from the Taiwan Strait (TWS), were investigated for the occurrence, composition profile, and spatial distribution of polycyclic aromatic hydrocarbons (PAHs) and oxygenated PAHs (OPAHs). PAHs were ubiquity in the TWS with a total concentration (∑PAHs, excluding naphthalene due to its high volatility) ranging from 17.8-213 ng g-1. Benzo[b] fluoranthene, fluoranthene, phenanthrene, and pyrene were the predominant PAHs. Also, eight OPAHs were detected, having a cumulative concentration range (∑OPAHs) of 10.5-118 ng g-1, predominated by anthraquinone and 6H-Benzo[c,d]Pyren-6-one. Higher concentrations of ∑PAHs and ∑OPAHs were detected at sampling sites adjacent to the mainland and in the northwest part of the TWS. The results suggested important continental input, and particle sedimentation under the specific hydrodynamic conditions of the region. Based on the measured concentrations and sediment quality guidelines, PAHs had a limited ecological impact on the area.


Subject(s)
Polycyclic Aromatic Hydrocarbons , Water Pollutants, Chemical , Environmental Monitoring , Geologic Sediments , Polycyclic Aromatic Hydrocarbons/analysis , Taiwan , Water Pollutants, Chemical/analysis
12.
PLoS One ; 16(11): e0260017, 2021.
Article in English | MEDLINE | ID: mdl-34793486

ABSTRACT

Flower bud development is a defining feature of walnut, which contributes to the kernel yield, yield stability, fruit quality and commodity value. However, little is known about the mechanism of the flower bud development in walnut. Here, the stages of walnut female flower bud development were divided into five period (P01-05) by using histological observation. They were further studied through PacBio Iso-Seq and RNA-seq analysis. Accordingly, we obtained 52,875 full-length transcripts, where 4,579 were new transcripts, 3,065 were novel genes, 1,437 were consensus lncRNAs and 20,813 were alternatively spliced isoforms. These transcripts greatly improved the current genome annotation and enhanced our understanding of the walnut transcriptome. Next, RNA sequencing of female flower buds at five periods revealed that circadian rhythm-plant was commonly enriched along with the flower bud developmental gradient. A total of 14 differentially expressed genes (DEGs) were identified, and six of them were confirmed by real-time quantitative analysis. Additionally, six and two differentially expressed clock genes were detected to be regulated by AS events and lncRNAs, respectively. All these detected plant circadian genes form a complex interconnected network to regulate the flower bud development. Thus, investigation of key genes associated with the circadian clock could clarify the process of flower bud development in walnut.


Subject(s)
Circadian Rhythm/genetics , Flowers/genetics , Juglans/genetics , Alternative Splicing , Base Sequence/genetics , Circadian Clocks/genetics , Gene Expression/genetics , Gene Expression Profiling/methods , Gene Expression Regulation, Plant/genetics , Genes, Plant/genetics , High-Throughput Nucleotide Sequencing , Juglans/growth & development , RNA, Long Noncoding , RNA-Seq/methods , Reproduction , Sequence Analysis, DNA , Sequence Analysis, RNA , Transcriptome/genetics , Exome Sequencing
13.
Plant Mol Biol ; 107(3): 129-146, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34596818

ABSTRACT

KEY MESSAGES: We reported an NBS-LRR gene, PsoRPM3, is highly expressed following RKN infection, initiating an HR response that promotes plant resistance. Meloidogyne spp. are root-knot nematodes (RKNs) that cause substantial economic losses worldwide. Screening for resistant tree resources and identifying plant resistance genes is currently the most effective way to prevent RKN infestations. Here, we cloned a novel TIR-NB-LRR-type resistance gene, PsoRPM3, from Xinjiang wild myrobalan plum (Prunus sogdiana Vassilcz.) and demonstrated that its protein product localized to the nucleus. In response to Meloidogyne incognita infection, PsoRPM3 gene expression levels were significantly higher in resistant myrobalan plum plants compared to susceptible plants. We investigated this difference, discovering that the - 309 to - 19 bp region of the susceptible PsoRPM3 promoter was highly methylated. Indeed, heterologous expression of PsoRPM3 significantly enhanced the resistance of susceptible tobacco plants to M. incognita. Moreover, transient expression of PsoRPM3 induced a hypersensitive response in tobacco, whereas RNAi-mediated silencing of PsoRPM3 in transgenic tobacco reduced this hypersensitive response. Several hypersensitive response marker genes were considerably up-regulated in resistant myrobalan plum plants when compared with susceptible counterparts inoculated with M. incognita. PsoPR1a (a SA marker gene), PsoPR2 (a JA marker gene), and PsoACS6 (an ET signaling marker gene) were all more highly expressed in resistant than in susceptible plants. Together, these results support a model in which PsoRPM3 is highly expressed following RKN infection, initiating an HR response that promotes plant resistance through activated salicylic acid, jasmonic acid, and ethylene signaling pathways.


Subject(s)
Nicotiana/genetics , Nicotiana/parasitology , Plant Proteins/genetics , Prunus/genetics , Tylenchoidea/pathogenicity , Animals , Cloning, Molecular , DNA Methylation , Disease Resistance/genetics , Gene Expression Regulation, Plant , Phylogeny , Plant Diseases/genetics , Plant Diseases/parasitology , Plant Immunity/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Promoter Regions, Genetic , Nicotiana/immunology
14.
Plants (Basel) ; 10(8)2021 Jul 29.
Article in English | MEDLINE | ID: mdl-34451606

ABSTRACT

The root-knot nematode (Meloidogyne incognita) causes huge economic losses in the agricultural industry throughout the world. Control methods against these polyphagous plant endoparasites are sparse, the preferred one being the deployment of plant cultivars or rootstocks bearing resistance genes against Meloidogyne species. Our previous study has cloned one resistance gene, PsoRPM3, from Xinjiang wild myrobalan plum (Prunus sogdiana). However, the function of PsoRPM3 remains elusive. In the present study, we have investigated the regulatory mechanism of PsoRPM3 in plant defense responses to M. incognita. Our results indicate that fewer giant cells were detected in the roots of the PsoRPM3 transgenic tobacco than wild tobacco lines after incubation with M. incognita. Transient transformations of full-length and TN structural domains of PsoRPM3 have induced significant hypersensitive responses (HR), suggesting that TIR domain might be the one which caused HR. Further, yeast two-hybrid results revealed that the full-length and LRR domain of PsoRPM3 could interact with the transcription factor Pso9TF. The addition of Pso9TF increased the ROS levels and induced HR. Thus, our data revealed that the LRR structural domain of PsoRPM3 may be associated with signal transduction. Moreover, we did not find any relative inductions of defense-related genes PsoEDS1, PsoPAD4 and PsoSAG101 in P. sogdiana, which has been incubated with M. incognita. In summary, our work has shown the key functional domain of PsoRPM3 in the regulation of defense responses to M. incognita in P. sogdiana.

15.
Front Immunol ; 12: 644483, 2021.
Article in English | MEDLINE | ID: mdl-33897691

ABSTRACT

Deletion of the gene for Themis affects T cell selection in the thymus, which would be expected to affect the TCR repertoire. We found an increased proportion of cells expressing Vα3.2 (TRAV9N-3) in the peripheral CD8+ T cell population in mice with germline Themis deficiency. Analysis of the TCRα repertoire indicated it was generally reduced in diversity in the absence of Themis, whereas the diversity of sequences using the TRAV9N-3 V-region element was increased. In wild type mice, Vα3.2+ cells showed higher CD5, CD6 and CD44 expression than non-Vα3-expressing cells, and this was more marked in cells from Themis-deficient mice. This suggested a virtual memory phenotype, as well as a stronger response to self-pMHC. The Vα3.2+ cells responded more strongly to IL-15, as well as showing bystander effector capability in a Listeria infection. Thus, the unusually large population of Vα3.2+ CD8+ T cells found in the periphery of Themis-deficient mice reflects not only altered thymic selection, but also allowed identification of a subset of bystander-competent cells that are also present in wild-type mice.


Subject(s)
CD8-Positive T-Lymphocytes/immunology , Immunologic Memory , Intercellular Signaling Peptides and Proteins/deficiency , Receptors, Antigen, T-Cell, alpha-beta/immunology , Animals , Intercellular Signaling Peptides and Proteins/immunology , Mice , Mice, Knockout , Receptors, Antigen, T-Cell, alpha-beta/genetics
16.
Genes (Basel) ; 12(5)2021 04 26.
Article in English | MEDLINE | ID: mdl-33926100

ABSTRACT

The phenomenon of multi-carpel and multi-ovule exists in the grapevine cultivar 'Xiangfei', but the mechanism of ovule formation is seldom reported. In this study, we observed the ovule formation process by using 'Xiangfei' grapes. The role of the VvAG2 (VvAGAMOUS) gene in ovule formation was identified, and we explored the relationship between VvAG2, VvSEP3(VvMADS4) and VvAGL11(VvMADS5) proteins. The results showed that the ovule primordium appeared when the inflorescence length of 'Xiangfei' grapes were 4-5 cm long; the relative expression levels of VvAG2, VvAGL11 and VvSEP3 genes were higher during ovule formation, and the expression levels of VvAG2 gene was the highest. Transgenic tomato (Solanum lycopersicum) plants expressing VvAG2 produced higher numbers of ovules and carpels than the wild type. Moreover, yeast two-hybrid and yeast three-hybrid experiments demonstrated that VvSEP3 acts as a bridge and interacts with VvAG2 and VvAGL11 proteins, respectively. Meanwhile, a homodimer can be formed between VvSEP3 and VvSEP3, but there was no interaction between VvAG2 and VvAGL11. These findings suggest that the VvAG2 gene is involved in the formation of ovules, and VvAG2/VvSEP3 together with VvAGL11/VvSEP3 can form a tetrameric complex. In summary, our data showed that VvAG2 along with VvSEP3 and VvAGL11 jointly regulate the ovule formation of 'Xiangfei' grapes.


Subject(s)
Gene Expression Regulation, Plant , MADS Domain Proteins/genetics , Ovule/genetics , Plant Proteins/genetics , Vitis/genetics , Gene Expression Regulation, Developmental , Solanum lycopersicum/genetics , MADS Domain Proteins/metabolism , Ovule/growth & development , Plant Proteins/metabolism , Transgenes , Vitis/growth & development
17.
Biomolecules ; 11(4)2021 03 30.
Article in English | MEDLINE | ID: mdl-33808413

ABSTRACT

For some horticultural plants, auxins can not only induce normal fruit setting but also form fake seeds in the induced fruits. This phenomenon is relatively rare, and, so far, the underlying mechanism remains unclear. In this study, "Fenghou" (Vitis vinifera × V. labrusca) grapes were artificially emasculated before flowering and then sprayed with 4-CPA (4-chlorophenoxyacetic acid) to analyze its effect on seed formation. The results show that 4-CPA can induce normal fruit setting in "Fenghou" grapes. Although more seeds were detected in the fruits of the 4-CPA-treated grapevine, most seeds were immature. There was no significant difference in the seed shape; namely, both fruit seeds of the grapevines with and without 4-CPA treatment contained a hard seed coat. However, the immature seeds lacked embryo and endosperm tissue and could not germinate successfully; these were considered defective seeds. Tissue structure observation of defective seeds revealed that a lot of tissue redifferentiation occurred at the top of the ovule, which increased the number of cell layers of the outer integument; some even differentiated into new ovule primordia. The qRT-PCR results demonstrated that 4-CPA application regulated the expression of the genes VvARF2 and VvAP2, which are associated with integument development in "Fenghou" grape ovules. Together, this study evokes the regulatory role of 4-CPA in the division and continuous redifferentiation of integument cells, which eventually develop into defective seeds with thick seed coats in grapes.


Subject(s)
2,4-Dichlorophenoxyacetic Acid/analogs & derivatives , Seeds/drug effects , Vitis/drug effects , Vitis/growth & development , 2,4-Dichlorophenoxyacetic Acid/pharmacology , Fruit/drug effects , Fruit/growth & development , Gene Expression Regulation, Plant , Indoleacetic Acids/metabolism , Plant Growth Regulators/pharmacology , Seeds/cytology , Seeds/genetics , Seeds/growth & development , Vitis/genetics
18.
Plant Cell Physiol ; 61(10): 1760-1774, 2020 Oct 01.
Article in English | MEDLINE | ID: mdl-32761091

ABSTRACT

Multicarpellate fruits are larger and produce more seeds than mono- or bicarpellate fruits, enhancing the reproductive capacity of the plant. To identify the phenotypic and molecular differences among florets of different carpel types, we studied carpel formation and fusion in the grapevine (Vitis vinifera) cultivar 'Xiangfei', which produces a high proportion of multicarpellate fruit. We also determined the function of VvSUPERMAN-like (VvSUP-like) and explored its relationship with VvWUS (VvWUSCHEL) and VvAG1 (VvAGAMOUS), which is related to the formation of carpel primordia. We showed that carpel formation and fusion were largely consistent between bicarpellate and tricarpellate ovaries, which both involve congenital fusion; rather, the differences between these ovary types arose from variation in carpel primordia number and location. Transgenic tomato (Solanum lycopersicum) plants expressing VvSUP-like produced significantly fewer carpels and other floral organs than the wild type. Moreover, transcriptome sequencing results indicate that VvSUP-like was more highly expressed in bicarpellate than in tricarpellate 'Xiangfei' florets. Luciferase reporter assays indicated that VvSUP-like inhibits the expression of VvAG1 and VvWUS by directly binding to their promoters, and VvWUS promotes VvAG1 expression by directly binding to its promoter. VvSUP-like inhibits the feedback signaling between VvWUS and VvAG1. Together, these results suggest that VvSUP-like negatively regulates the number of carpels that develop by inhibiting VvAG1 and VvWUS expression.


Subject(s)
Flowers/metabolism , Genes, Plant/physiology , Plant Proteins/genetics , Solanum lycopersicum/metabolism , Transcription Factors/genetics , Vitis/metabolism , Flowers/growth & development , Gene Expression , Gene Expression Regulation, Plant , Genes, Plant/genetics , Solanum lycopersicum/genetics , Solanum lycopersicum/growth & development , Plant Proteins/metabolism , Plant Proteins/physiology , Transcription Factors/metabolism , Transcription Factors/physiology , Vitis/genetics , Vitis/physiology
19.
Protoplasma ; 257(5): 1333-1344, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32367262

ABSTRACT

Root-knot nematodes (RKNs) are highly invasive plant parasites that establish permanent feeding sites within the roots of the host plant. Successful establishment of the feeding site is essential for the survival of RKN. The formation and development of the feeding cell, also called giant cell, involve both cell division and endoreduplication. Here, we examined giant cell development and endoreduplication in Prunus sogdiana infected with the RKN. We found that feeding sites were established 3-5 days post inoculation (dpi) and matured at 21-28 dpi. The giant cells began to form 5 dpi and continued to increase in size from 7 to 21 dpi. The large numbers of dividing nuclei were observed in giant cells from 7 to 14 dpi. However, nuclear division was rarely observed after 28 days. RT-PCR and in situ hybridization analyses revealed that PsoCCS52A was abundantly expressed at 7-21 dpi and the PsoCCS52A signal observed in giant cell nucleus at 7-14 dpi. The PsoCCS52B is highly expressed at 14 dpi, and the hybridization signal was mainly in the cytoplasm of giant cells. The PsoDEL1 expression was lowest 7-21 dip, with negligible transcript detected in the giant cells. This indicates that the PsoCCS52A plays a role in the process of cell division, while the CCS52B plays a role in the development of giant cells. The PsoDEL1 plays a negative regulatory role in megakaryocyte nuclear replication. These data suggest that an increased expression of PsoCCS52A promotes nuclear division and produces a large number of polyploid nuclei, the area of giant cells and feeding sites increase, ultimately leading to the formation of galls in Prunus sogdiana.


Subject(s)
Giant Cells/chemistry , Nematoda/chemistry , Plant Roots/chemistry , Prunus/chemistry , Animals , Arabidopsis , Transcription Factors
20.
Ecotoxicol Environ Saf ; 196: 110493, 2020 Jun 15.
Article in English | MEDLINE | ID: mdl-32276158

ABSTRACT

Atmospheric bulk deposition samples were gathered month by month throughout a year at two sites in vicinity of a MSWI in Shanghai, to carry out an investigation on the atmospheric bulk deposition fluxes and seasonal variations of polychlorinated dibenzo-p-dioxinsand dibenzofurans (PCDD/Fs). The atmospheric bulk deposition fluxes of PCDD/Fs ranged from 23.5 to 560 pg m-2·d-1 (1.01-23.9 pg WHO-TEQ·m-2·d-1), with an average value of 136 pg m-2·d-1 (5.08 pg WHO-TEQ·m-2·d-1) in the Vicinity of the MSWI in Shanghai. The measured concentrations were well compared with those from urban or industrial sites in other regions in China and abroad. The seasonal trend of atmospheric bulk deposition fluxes of PCDD/Fs throughout a year exhibited as high levels in summer, moderate levels in winter, and low levels in spring and autumn. The principal component analysis (PCA) indicated not only the MSWI, but also vehicle emission was the indispensable source of PCDD/Fs in the vicinity of the MSWI, especially for the urban areas. The positive matrix factorization (PMF) apportioned 5 source categories: MSWI, diesel vehicles, atmosphere background, industrial combustion and un-leaded gas vehicles, accounting for 43.3%, 38.1%, 6.89%, 6.19% and 5.50% in average, respectively of PCDD/Fs in atmospheric bulk deposition in the vicinity of the MSWI in Shanghai, China.


Subject(s)
Air Pollutants/analysis , Atmosphere/chemistry , Dibenzofurans/analysis , Polychlorinated Dibenzodioxins/analysis , Refuse Disposal , China , Cities , Environmental Monitoring , Incineration , Seasons
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