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Biochem Biophys Res Commun ; 534: 73-78, 2021 01 01.
Article in English | MEDLINE | ID: mdl-33310191

ABSTRACT

Glycosylation catalyzed by uridine diphosphate-dependent glycosyltransferases (UGT) contributes to the chemical and functional diversity of a number of natural products. Bacillus subtilis Bs-YjiC is a robust and versatile UGT that holds potentials in the biosynthesis of unnatural bioactive ginsenosides. To understand the molecular mechanism underlying the substrate promiscuity of Bs-YjiC, we solved crystal structures of Bs-YjiC and its binary complex with uridine diphosphate (UDP) at resolution of 2.18 Å and 2.44 Å, respectively. Bs-YjiC adopts the classical GT-B fold containing the N-terminal and C-terminal domains that accommodate the sugar acceptor and UDP-glucose, respectively. Molecular docking indicates that the spacious sugar-acceptor binding pocket of Bs-YjiC might be responsible for its broad substrate spectrum and unique glycosylation patterns toward protopanaxadiol-(PPD) and PPD-type ginsenosides. Our study reveals the structural basis for the aglycone promiscuity of Bs-YjiC and will facilitate the protein engineering of Bs-YjiC to synthesize novel bioactive glycosylated compounds.


Subject(s)
Bacillus subtilis/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Glycosyltransferases/chemistry , Glycosyltransferases/metabolism , Bacterial Proteins/genetics , Binding Sites , Crystallography, X-Ray , Ginsenosides/chemistry , Ginsenosides/metabolism , Glycosylation , Glycosyltransferases/genetics , Models, Molecular , Molecular Docking Simulation , Protein Domains , Sapogenins/metabolism , Substrate Specificity , Uridine Diphosphate/chemistry , Uridine Diphosphate/metabolism , Uridine Diphosphate Glucose/metabolism
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