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1.
BMC Plant Biol ; 24(1): 137, 2024 Feb 26.
Article in English | MEDLINE | ID: mdl-38408939

ABSTRACT

The deleterious impact of osmotic stress, induced by water deficit in arid and semi-arid regions, poses a formidable challenge to cotton production. To protect cotton farming in dry areas, it's crucial to create strong plans to increase soil water and reduce stress on plants. The carboxymethyl cellulose (CMC), gibberellic acid (GA3) and biochar (BC) are individually found effective in mitigating osmotic stress. However, combine effect of CMC and GA3 with biochar on drought mitigation is still not studied in depth. The present study was carried out using a combination of GA3 and CMC with BC as amendments on cotton plants subjected to osmotic stress levels of 70 (70 OS) and 40 (40 OS). There were five treatment groups, namely: control (0% CMC-BC and 0% GA3-BC), 0.4%CMC-BC, 0.4%GA3-BC, 0.8%CMC-BC, and 0.8%GA3-BC. Each treatment was replicated five times with a completely randomized design (CRD). The results revealed that 0.8 GA3-BC led to increase in cotton shoot fresh weight (99.95%), shoot dry weight (95.70%), root fresh weight (73.13%), and root dry weight (95.74%) compared to the control group under osmotic stress. There was a significant enhancement in cotton chlorophyll a (23.77%), chlorophyll b (70.44%), and total chlorophyll (35.44%), the photosynthetic rate (90.77%), transpiration rate (174.44%), and internal CO2 concentration (57.99%) compared to the control group under the 40 OS stress. Thus 0.8GA3-BC can be potential amendment for reducing osmotic stress in cotton cultivation, enhancing agricultural resilience and productivity.


Subject(s)
Carboxymethylcellulose Sodium , Charcoal , Gibberellins , Gossypium , Chlorophyll A , Osmotic Pressure , Water
2.
Sci Rep ; 14(1): 141, 2024 01 02.
Article in English | MEDLINE | ID: mdl-38167554

ABSTRACT

Soil salinity, the second most prominent cause of land degradation after soil erosion, has posed a persistent challenge to agriculture. Currently, approximately 1 billion hectares of Earth's land surface, equivalent to 7%, are affected by salinity. While biochar has proven effective in mitigating salinity stress, the specific role of deashed biochar in salinity mitigation has not been thoroughly explored. Therefore, this study was conducted to investigate the impact of four levels of deashed biochar (0%, 0.4%, 0.8%, and 1.2%) on the growth and physiological attributes of Fenugreek under both non-saline conditions (2.54 dS/m EC) and salinity stress conditions (5.46 dS/m EC). The results revealed a notable enhancement in various parameters under salinity stress. Compared to the control, the application of 1.20% deashed biochar led to a significant increase in shoot fresh weight (30.82%), root fresh weight (13.06%), shoot dry weight (17.43%), root dry weight (33.44%), shoot length (23.09%), and root length (52.39%) under salinity stress. Furthermore, improvements in internal CO2 concentration (9.91%), stomatal conductance (15.49%), photosynthetic rate (25.50%), and transpiration rate (10.46%) were observed, validating the efficacy of 1.20% deashed biochar in alleviating salinity stress. The study also demonstrated a significant decrease in the activities of oxidative stress markers such as peroxidase (POD), superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), electrolyte leakage, and malondialdehyde (MDA). Simultaneously, there was an increase in the concentrations of essential nutrients, namely nitrogen (N), phosphorus (P), and potassium (K), in both shoot and root tissues. These findings collectively suggest that deashed biochar, particularly at a concentration of 1.20%, is recommended for achieving enhanced crop production under conditions of salinity stress.


Subject(s)
Antioxidants , Trigonella , Antioxidants/metabolism , Trigonella/metabolism , Oxidative Stress , Salt Stress , Salinity
3.
BMC Plant Biol ; 24(1): 63, 2024 Jan 23.
Article in English | MEDLINE | ID: mdl-38262953

ABSTRACT

Salinity stress adversely affects agricultural productivity by disrupting water uptake, causing nutrient imbalances, and leading to ion toxicity. Excessive salts in the soil hinder crops root growth and damage cellular functions, reducing photosynthetic capacity and inducing oxidative stress. Stomatal closure further limits carbon dioxide uptake that negatively impact plant growth. To ensure sustainable agriculture in salt-affected regions, it is essential to implement strategies like using biofertilizers (e.g. arbuscular mycorrhizae fungi = AMF) and activated carbon biochar. Both amendments can potentially mitigate the salinity stress by regulating antioxidants, gas exchange attributes and chlorophyll contents. The current study aims to explore the effect of EDTA-chelated biochar (ECB) with and without AMF on maize growth under salinity stress. Five levels of ECB (0, 0.2, 0.4, 0.6 and 0.8%) were applied, with and without AMF. Results showed that 0.8ECB + AMF caused significant enhancement in shoot length (~ 22%), shoot fresh weight (~ 15%), shoot dry weight (~ 51%), root length (~ 46%), root fresh weight (~ 26%), root dry weight (~ 27%) over the control (NoAMF + 0ECB). A significant enhancement in chlorophyll a, chlorophyll b and total chlorophyll content, photosynthetic rate, transpiration rate and stomatal conductance was also observed in the condition 0.8ECB + AMF relative to control (NoAMF + 0ECB), further supporting the efficacy of such a combined treatment. Our results suggest that adding 0.8% ECB in soil with AMF inoculation on maize seeds can enhance maize production in saline soils, possibly via improvement in antioxidant activity, chlorophyll contents, gas exchange and morphological attributes.


Subject(s)
Mycorrhizae , Antioxidants , Zea mays , Charcoal , Edetic Acid , Chlorophyll A , Salt Stress , Chlorophyll , Soil
4.
BMC Plant Biol ; 24(1): 36, 2024 Jan 09.
Article in English | MEDLINE | ID: mdl-38191323

ABSTRACT

Maize cultivated for dry grain covers approximately 197 million hectares globally, securing its position as the second most widely grown crop worldwide after wheat. Although spermidine and biochar individually showed positive impacts on maize production in existing literature, their combined effects on maize growth, physiology, nutrient uptake remain unclear and require further in-depth investigation. That's why a pot experiment was conducted on maize with spermidine and potassium enriched biochar (KBC) as treatments in Multan, Pakistan, during the year 2022. Four levels of spermidine (0, 0.15, 0.30, and 0.45mM) and two levels of potassium KBC (0 and 0.50%) were applied in completely randomized design (CRD). Results showed that 0.45 mM spermidine under 0.50% KBC caused significant enhancement in maize shoot length (11.30%), shoot fresh weight (25.78%), shoot dry weight (17.45%), root length (27.95%), root fresh weight (26.80%), and root dry weight (20.86%) over control. A significant increase in maize chlorophyll a (50.00%), chlorophyll b (40.40%), total chlorophyll (47.00%), photosynthetic rate (34.91%), transpiration rate (6.51%), and stomatal conductance (15.99%) compared to control under 0.50%KBC validate the potential of 0.45 mM spermidine. An increase in N, P, and K concentration in the root and shoot while decrease in electrolyte leakage and antioxidants also confirmed that the 0.45 mM spermidine performed more effectively with 0.50%KBC. In conclusion, 0.45 mM spermidine with 0.50%KBC is recommended for enhancing maize growth.


Subject(s)
Potassium , Zea mays , Chlorophyll A , Spermidine/pharmacology
5.
BMC Plant Biol ; 23(1): 476, 2023 Oct 09.
Article in English | MEDLINE | ID: mdl-37807063

ABSTRACT

Salinity stress is one of the major hurdles in agriculture which adversely affects crop production. It can cause osmotic imbalance, ion toxicity that disrupts essential nutrient balance, impaired nutrient uptake, stunted growth, increased oxidative stress, altered metabolism, and diminished crop yield and quality. However, foliar application of osmoprotectant is becoming popular to resolve this issue in crops. These osmoprotectants regulate the cellular osmotic balance and protect plants from the detrimental effects of high salt concentrations. Furthermore, the role of arbuscular mycorrhizae (AMF) is also established in this regard. These AMF effectively reduce the salinity negative effects by improving the essential nutrient balance via the promotion of root growth. That's why keeping in mind the effectiveness of osmoprotectants current study was conducted on cotton. Total of six levels of γ-Aminobutyric acid (GABA = 0 mM, 0. 5 mM, and 1 mM) and ectoine (ECT = 0 mM, 0.25 mM, and 0.5 mM) were applied as treatments in 3 replications. Results showed that 0.5 mM γ-Aminobutyric acid and ectoine performed significantly best for the improvement in cotton growth attributes. It also caused significant enhancement in K and Ca contents of the leaf, stem, bur, and seeds compared to the control. Furthermore, 0.5 mM γ-Aminobutyric acid and ectoine also caused a significant decline in Cl and Na contents of leaf, stem, bur, and seeds of cotton compared to control under salinity stress. A significant enhancement in chlorophyll contents, gas exchange attributes, and decline in electrolyte leakage validated the effectiveness of 0.5 mM γ-Aminobutyric acid and ectoine over control. In conclusion, 0.5 mM γ-Aminobutyric acid and ectoine have the potential to mitigate the salinity stress in cotton.


Subject(s)
Mycorrhizae , Soil , Antioxidants , Mycorrhizae/physiology , Sodium Chloride/pharmacology , gamma-Aminobutyric Acid
6.
Chembiochem ; 24(23): e202300582, 2023 12 01.
Article in English | MEDLINE | ID: mdl-37728423

ABSTRACT

(R)-ß-piperonyl-γ-butyrolactones are key building blocks for the synthesis of podophyllotoxin, which have demonstrated remarkable potential in cancer treatment. Baeyer-Villiger monooxygenases (BVMOs)-mediated asymmetric oxidation is a green approach to produce chiral lactones. While several BVMOs were able to oxidize the corresponding cyclobutanone, most BVMOs gave the (S) enantiomer while Cyclohexanone monooxygenase (CHMO) from Brevibacterium sp. HCU1 gave (R) enantiomer, but with a low enantioselectivity (75 % ee). In this study, we use a strategy called "focused rational iterative site-specific mutagenesis" (FRISM) at residues ranging from 6 Šfrom substrate. The mutations by using a restricted set of rationally chosen amino acids allow the formation of a small mutant library. By generating and screening less than 60 variants, we achieved a high ee of 96.8 %. Coupled with the cofactor regeneration system, 9.3 mM substrate was converted completely in a 100-mL scale reaction. Therefore, our work reveals a promising synthetic method for (R)-ß-piperonyl-γ-butyrolactone with the highest enantioselectivity, and provides a new opportunity for the chem-enzymatic synthesis of podophyllotoxin.


Subject(s)
Oxygenases , Podophyllotoxin , Oxygenases/metabolism , Mixed Function Oxygenases/metabolism , Oxidation-Reduction , Substrate Specificity
7.
BMC Plant Biol ; 23(1): 302, 2023 Jun 06.
Article in English | MEDLINE | ID: mdl-37280509

ABSTRACT

Heat stress poses a threat to plants in arid and semiarid regions, leading to soil salinization and plant mortality. Researchers are exploring remedies to alleviate these effects, including using gibberellic acid (GA3) to regulate plant enzymes and antioxidants. Additionally, sodium nitroprusside (SNP) is gaining attention, but its combined effect with GA3 requires further research. To address this gap, we investigated the effects of GA3 and SNP on plants under heat stress conditions. For that, wheat plants were cultivated under 40 °C for 6 h per day (15 days). Sodium nitroprusside (donor of NO and SNP) and gibberellic acid (GA3), respectively, with 100 µM and 5 µg/ml concentrations, were applied as foliar sprays at 10 days after sowing (DAS). Results showed that SNP + GA3 treatment had the highest plant height (4.48% increase), plant fresh weight (29.7%), plant dry weight (87%), photosynthetic rate (39.76%) and stomatal conductance (38.10%), and Rubisco (54.2%) compared to the control. Our findings indicate a significant increase in NO, H2O2, TBARS, SOD, POD, APX, proline, GR, and GB that greatly scavenged reactive oxygen species (ROS) for decreasing the adverse effect of stress. Such findings confirmed the efficacy of the combined treatment of SNP + GA3 under high-temperature stress compared to the solitary application of GA3, SNP, and control. In conclusion, using SNP + GA3 is a better strategy for mitigating heat stress in wheat than individual applications. Further research is recommended to validate the effectiveness of SNP + GA3 in other cereal crops.


Subject(s)
Hydrogen Peroxide , Triticum , Nitroprusside/pharmacology , Triticum/physiology , Hydrogen Peroxide/pharmacology , Heat-Shock Response
8.
Sci Rep ; 13(1): 8720, 2023 05 30.
Article in English | MEDLINE | ID: mdl-37253839

ABSTRACT

Lead (Pb) toxicity is a significant environmental issue, especially in areas with a past of industrial activities and mining. The existence of Pb in the soil can have negative impacts on plant growth and development, and it can also pose a risk to human health through the food chain. Acidified carbon has shown promise as an effective management technology for mitigating Pb toxicity. This study provides important insights into the potential of acidified biochar as a low-cost and eco-friendly method for managing Pb-contaminated soils. The current study explores the effectiveness of acidified biochar (AB) in alleviating Pb stress in mint. The study involved two levels of Pb (0 = control and 200 mg/kg Pb) and four levels of AB as treatments (0, 0.45, 0.90, and 1.20%). Results indicate that 1.20% AB was the most effective treatment, significantly decreasing root and shoot Pb concentration while enhancing shoot and root fresh and dry weight, shoot and root length, and shoot and root N, P, and K concentration. Moreover, a significant decrease in MDA (0.45AB, 0.90AB, and 1.20AB caused a decline in MDA content by 14.3%, 27.8%, and 40.2%, respectively) and an increase in ascorbic acid (0.45AB, 0.90AB, and 1.20AB led to an increase in ascorbic acid content of 1.9%, 24.8%, and 28.4%, respectively) validated the effectiveness of 1.20% AB compared to the control. Adding 0.45AB, 0.90AB, and 1.20AB led to an increase in soluble sugar content of 15.6%, 27.5%, and 32.1%, respectively, compared to the treatment without AB. Further investigations at the field level are suggested to confirm the efficacy of 1.20% AB as the best treatment against Pb toxicity in saline soil conditions.


Subject(s)
Mentha , Soil Pollutants , Humans , Soil/chemistry , Lead/toxicity , Charcoal/pharmacology , Ascorbic Acid , Saline Solution , Soil Pollutants/analysis
9.
Sci Rep ; 13(1): 8249, 2023 05 22.
Article in English | MEDLINE | ID: mdl-37217569

ABSTRACT

The growth of wheat (Triticum aestivum) is constrained by soil salinity, although some fungal species have been shown to enhance production in saline environments. The yield of grain crops is affected by salt stress, and this study aimed to investigate how arbuscular mycorrhizal fungus (AMF) mitigates salt stress. An experiment was conducted to assess the impact of AMF on wheat growth and yield in conditions of 200 mM salt stress. Wheat seeds were coated with AMF at a rate of 0.1 g (108 spores) during sowing. The results of the experiment demonstrated that AMF inoculation led to a significant improvement in the growth attributes of wheat, including root and shoot length, fresh and dry weight of root and shoot. Furthermore, a significant increase in chlorophyll a, b, total, and carotenoids was observed in the S2 AMF treatment, validating the effectiveness of AMF in enhancing wheat growth under salt stress conditions. Additionally, AMF application reduced the negative effects of salinity stress by increasing the uptake of micronutrients such as Zn, Fe, Cu, and Mn while regulating the uptake of Na (decrease) and K (increase) under salinity stress. In conclusion, this study confirms that AMF is a successful strategy for reducing the negative effects of salt stress on wheat growth and yield. However, further investigations are recommended at the field level under different cereal crops to establish AMF as a more effective amendment for the alleviation of salinity stress in wheat.


Subject(s)
Mycorrhizae , Triticum , Antioxidants , Chlorophyll A , Mycorrhizae/physiology , Homeostasis , Salt Stress , Crops, Agricultural , Oxidative Stress , Nutrients , Salinity
10.
Mol Carcinog ; 61(3): 346-358, 2022 03.
Article in English | MEDLINE | ID: mdl-34882856

ABSTRACT

Emerging investigations have demonstrated that lncRNAs are key crucial modulators in cancer. In this study, we investigated the role of LINC02381 in breast cancer (BC). Reverse transcriptase quantitative polymerase chain reaction measured the LINC02381 level in BC tissues and cells. Colony formation, EdU staining, wound healing and Transwell experiments examined the impact of LINC02381 depletion on BC cell phenotypes. Relationship among miR-1271-5p, LINC02381, and FN1 was tested through applying RIP, luciferase reporter, and RNA pull-down assays. We found that LINC02381 expression was elevated in BC. Functionally, LINC02381 knockdown hampered BC cell proliferation, migration, and invasion. LINC02381 overexpression accelerated tumor formation in vivo. Mechanistically, LINC02381 acted as a ceRNA to increase FN1 via decoying miR-1271-5p. Additionally, LINC02381 activated PI3K/AKT pathway by upregulating FN1. Rescue assays indicated that FN1 upregulation or PI3K/AKT activation rescued the LINC02381 knockdown-mediated inhibition on malignant phenotypes of BC cells. Overall, LINC02381 exerts carcinogenic effects in BC by the miR-1271-5p/FN1 axis to activate PI3K/AKT pathway.


Subject(s)
Breast Neoplasms , MicroRNAs , Breast Neoplasms/genetics , Breast Neoplasms/pathology , Cell Line, Tumor , Cell Movement/genetics , Cell Proliferation/genetics , Female , Gene Expression Regulation, Neoplastic , Humans , MicroRNAs/genetics , MicroRNAs/metabolism , Phosphatidylinositol 3-Kinases/genetics , Phosphatidylinositol 3-Kinases/metabolism , Proto-Oncogene Proteins c-akt/genetics , Proto-Oncogene Proteins c-akt/metabolism
11.
Folia Histochem Cytobiol ; 59(4): 291-301, 2021.
Article in English | MEDLINE | ID: mdl-34970732

ABSTRACT

INTRODUCTION: Soyasaponins are triterpenoid glycosides discovered in soybean and have anti-cancer properties. Soyasaponin A was reported to repress estrogen-insensitive breast cancer cell proliferation. This study intends to explore the role of one isomer of soyasaponin A, i.e. soyasaponin Ag (Ssa Ag), in triple-negative breast cancer (TNBC) development. MATERIAL AND METHODS: Bioinformatic databases were used to predict DUSP6 expression in breast cancer (BC) as well as the correlation between the expression of DUSP6 (or MAPK1, MAPK14) with the prognosis of patients with BC. The expression of DUSP6/MAPK signaling-related genes (DUSP6, MAPK1, and MAPK14) in TNBC cell lines was assessed via Western blot analysis and RT-qPCR. Levels of cell apoptosis proteins (Bax and Bcl-2) in TNBC cells were assessed via Western blot analysis. CCK-8 assay, colony formation assay, and flow cytometry analysis were conducted for the measurement of TNBC cell growth and apoptosis. In vivo xenograft assay was employed for investigating the biological influence of Ssa Ag on tumor growth. RESULTS: The poor prognosis of BC patients was linked to the aberrant expression of DUSP6/MAPK pathway genes. Low expression of DUSP6 or high expression of MAPK1 (or MAPK14) was correlated to poor prognosis. DUSP6 was downregulated while MAPK1 and MAPK14 were upregulated in TNBC cells versus normal cells. Ssa Ag upregulated DUSP6 expression while downregulated MAPK1 and MAPK14 expression, inhibiting the MAPK signaling pathway. Additionally, Ssa Ag promoted in vitro TNBC cell apoptosis and restrained cell growth, and repressed in vivo tumor growth. CONCLUSIONS: Ssa Ag inhibited TNBC progression via upregulating DUSP6 and inactivating the MAPK signaling pathway.


Subject(s)
Dual Specificity Phosphatase 6 , MAP Kinase Signaling System , Saponins/pharmacology , Triple Negative Breast Neoplasms , Apoptosis , Cell Line, Tumor , Cell Proliferation , Gene Expression Regulation, Neoplastic , Humans , Triple Negative Breast Neoplasms/drug therapy , Triple Negative Breast Neoplasms/genetics
12.
Genome ; 63(2): 115-124, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31774699

ABSTRACT

Pre-harvest soybean seeds in the field are susceptible to high temperature and humidity (HTH) stress, leading to pre-harvest seed deterioration, which will result in a reduction in grain quality, yield, and seed vigor. To understand the gene expression involved in seed deterioration response under HTH stress, in this study, we conducted an RNA-Seq analysis using two previously screened soybean cultivars with contrasting seed deterioration resistance. HTH stress induced 1081 and 357 differentially expressed genes (DEGs) in the sensitive cultivar Ningzhen No. 1 and resistant cultivar Xiangdou No. 3, respectively. The majority of DEGs in the resistant cultivar were up-regulated, while down-regulated DEGs were predominant in the sensitive cultivar. KEGG pathway analysis revealed that metabolic pathways, biosynthesis of secondary metabolites, and protein processing in endoplasmic reticulum were the predominant pathways in both cultivars during seed deterioration under HTH stress. The genes involved in photosynthesis, carbohydrate metabolism, lipid metabolism, and heat shock proteins pathways might contribute to the different response to seed deterioration under HTH treatment in the two soybean cultivars. Our study extends the knowledge of gene expression in soybean seed under HTH stress and further provides insight into the molecular mechanism of seed deterioration as well as new strategies for breeding soybean with improved seed deterioration resistance.


Subject(s)
Glycine max/genetics , Hot Temperature , Humidity , Seeds/genetics , Transcriptome , Gene Ontology , RNA-Seq , Glycine max/metabolism
13.
Biomed Res Int ; 2017: 4940384, 2017.
Article in English | MEDLINE | ID: mdl-28293636

ABSTRACT

Selenium- (Se-) enriched polysaccharide SPMP-2a was extracted and purified from Pleurotus geesteranus. SPMP-2a is a white flocculent polysaccharide and soluble in water, with a molecular weight of 3.32 × 104 Da. Fourier transform infrared spectroscopy spectral analysis indicated that it belongs to an acid Se polysaccharide with α-D-glucopyranoside bond. The effects of Se polysaccharide SPMP-2a in P. geesteranus against hydrogen peroxide- (H2O2-) induced oxidative damage in human keratinocytes (HaCaT) cells were evaluated further. Reduced cell viability and elevated apoptotic rates in H2O2-treated HaCaT cells were proven by MTT and flow cytometry assays. Hoechst 33342 staining revealed chromatin condensations in the nuclei of HaCaT cells. However, with the addition of SPMP-2a, cell viability improved, nuclear condensation declined, and cell apoptotic rates dropped significantly. Ultrastructural observation consistently revealed that treatments with SPMP-2a reduced the number of swollen and vacuolar mitochondria in the H2O2-treated cells compared with the controls. Furthermore, SPMP-2a increased the superoxide dismutase (SOD) and catalase (CAT) activities and reduced reactive oxygen species (ROS) content. Western blot analysis showed that SPMP-2a treatment effectively increased B-cell lymphoma 2 (Bcl-2) protein expression. Therefore, SPMP-2a could improve cellular antioxidant enzyme activities, reduce ROS levels, and increase Bcl-2 protein expression levels, thereby reducing cell apoptosis and protecting HaCaT cells from H2O2-induced oxidative damage.


Subject(s)
Hydrogen Peroxide/chemistry , Organoselenium Compounds/chemistry , Pleurotus/chemistry , Polysaccharides/chemistry , Selenium/chemistry , Antioxidants/chemistry , Apoptosis , Catalase/metabolism , Cell Death , Cell Line, Tumor , Cell Survival , Chromatography, High Pressure Liquid , Flow Cytometry , Humans , Molecular Weight , Oxidative Stress , Proto-Oncogene Proteins c-bcl-2/metabolism , Reactive Oxygen Species/metabolism , Spectroscopy, Fourier Transform Infrared , Superoxide Dismutase/metabolism
14.
AoB Plants ; 9(6): plx064, 2017 Nov.
Article in English | MEDLINE | ID: mdl-29302304

ABSTRACT

Aluminium (Al) toxicity is one of the most important limiting factors for crop yield in acidic soils. However, the mechanisms that confer Al tolerance still remain largely unknown. To understand the molecular mechanism that confers different tolerance to Al, we performed global transcriptome analysis to the roots and leaves of two contrasting soybean genotypes, BX10 (Al-tolerant) and BD2 (Al-sensitive) under 0 and 50 µM Al3+ treatments, respectively. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses revealed that the expression levels of the genes involved in lipid/carbohydrate metabolism and jasmonic acid (JA)-mediated signalling pathway were highly induced in the roots and leaves of both soybean genotypes. The gene encoding enzymes, including pyruvate kinase, phosphoenolpyruvate carboxylase, ATP-citrate lyase and glutamate-oxaloacetate transaminase 2, associated with organic acid metabolism were differentially expressed in the BX10 roots. In addition, the genes involved in citrate transport were differentially expressed. Among these genes, FRD3b was down-regulated only in BD2, whereas the other two multidrug and toxic compound extrusion genes were up-regulated in both soybean genotypes. These findings confirmed that BX10 roots secreted more citrate than BD2 to withstand Al stress. The gene encoding enzymes or regulators, such as lipoxygenase, 12-oxophytodienoate reductase, acyl-CoA oxidase and jasmonate ZIM-domain proteins, involved in JA biosynthesis and signalling were preferentially induced in BD2 leaves. This finding suggests that the JA defence response was activated, possibly weakening the growth of aerial parts because of excessive resource consumption and ATP biosynthesis deficiency. Our results suggest that the Al sensitivity in some soybean varieties could be attributed to the low level of citrate metabolism and exudation in the roots and the high level of JA-mediated defence response in the leaves.

15.
Indian J Microbiol ; 56(3): 344-52, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27407299

ABSTRACT

Acidic red soil from a forest in Jiangxi Province was selected to isolate aluminum (Al)-resistant microbes, from which eight fungi were isolated. Two strains (S4 and S7) were found to be extremely tolerant to Al concentrations of up to 550 mmol L(-1) and could grow at low pH levels (3.20-3.11). Morphological and 26S rDNA sequence analyses indicated that strain S4 belonged to Eupenicillium, while strain S7 was an unclassified Trichocomaceae. Further investigation showed that both strains were endowed with the ability to resist Al; strain S4 accumulated such a substantial amount of Al that its growth was limited to a larger extent than strain S7. The lower amounts of Al adsorbed in the mycelium and the much larger amounts of Al retained in the medium, in addition to the color change of the culture solution, implied that these two strains may resist Al by preventing Al from entering the cell and by chelating Al by secreting unique metabolites outside of the cell.

16.
Chem Biol Drug Des ; 84(5): 603-15, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24797889

ABSTRACT

In this study, we report the identification of a new shikonin-phenoxyacetic acid derivative, as an inhibitor of tubulin. A series of compounds were prepared; among them, compound 16 [(R)-1-(5,8-dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-enyl 2-(4- phenoxyphenyl) acetate] potently inhibited the function of microtubules, inducing cell growth inhibition, apoptosis of cancer cell lines in a concentration and time-dependent manner. Molecular docking involving 16 at the vinblastine binding site of tubulin indicated that a phenoxy moiety interacted with tubulin via hydrogen bonding with asparaginate (Asn) and tyrosine (Tyr). Analysis of microtubules with confocal microscopy demonstrated that 16 altered the microtubule architecture and exhibited a significant reduction in microtubule density. Cell cycle assay further proved that HepG2 cells were blocked in G2/M phase. Our study provides a new, promising compound for the development of tubulin inhibitors by proposing a new target for the anticancer activity of shikonin.


Subject(s)
Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Naphthoquinones/chemistry , Tubulin Modulators/chemistry , Tubulin Modulators/pharmacology , Tubulin/metabolism , Antineoplastic Agents/chemical synthesis , Apoptosis/drug effects , Binding Sites , Dose-Response Relationship, Drug , Hep G2 Cells/drug effects , Humans , Hydrogen Bonding , Microtubules/drug effects , Molecular Docking Simulation , Molecular Targeted Therapy , Vinblastine/metabolism
17.
Chem Biol Drug Des ; 83(3): 334-43, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24118825

ABSTRACT

A series of shikonin derivatives (1-13) that were acylated selectively by various thiophene or indol carboxylic acids at the side chain of shikonin were synthesized, and their biological activities were also evaluated as potential tubulin inhibitors. Among them, compound 3 ((R)-1-(5,8-dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-enyl 3-(1H-indol-3-yl)propanoate) and compound 8 ((R)-1-(5,8-dihydroxy-1,4-dioxo-1,4-dihydronaphthalen-2-yl)-4-methylpent-3-enyl 2-(thiophen-3-yl)acetate) exhibited good antiproliferative activity of A875 (IC50  = 0.005 ± 0.001 µm, 0.009  ± 0.002 µm) and HeLa (IC50  = 11.84 ± 0.64 µm, 4.62  ± 0.31 µm) cancer cell lines in vitro, respectively. Shikonin (IC50  = 0.46 ± 0.002 µm, 4.80 ± 0.48 µm) and colchicine (IC50  = 0.75 ± 0.05 µm, 17.79 ± 0.76 µm) were used as references. Meanwhile, they also showed the most potent growth inhibitory activity against tubulin (IC50 of 3.96  ± 0.13 µm and 3.05 ± 0.30 µm, respectively), which were compared with shikonin (IC50  =  15.20 ± 0.25 µm) and colchicine (IC50  = 3.50 ± 0.35 µm). Furthermore, from the results of flow cytometer, we found compound 3 can really inhibit HeLa cell proliferation and has low cell toxicity. Based on the preliminary results, compound 3 with potent inhibitory activity in tumor growth may be a potential anticancer agent.


Subject(s)
Indoles/chemical synthesis , Indoles/pharmacology , Naphthoquinones/chemistry , Naphthoquinones/chemical synthesis , Naphthoquinones/pharmacology , Thiophenes/chemical synthesis , Thiophenes/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Binding Sites , Cell Cycle Checkpoints/drug effects , Cell Line, Tumor , Cell Survival/drug effects , Colchicine/chemical synthesis , Colchicine/chemistry , Colchicine/pharmacology , HeLa Cells , Humans , Indoles/chemistry , Molecular Docking Simulation , Protein Structure, Tertiary , Thiophenes/chemistry , Tubulin/chemistry , Tubulin/metabolism , Tubulin Modulators/chemical synthesis , Tubulin Modulators/chemistry , Tubulin Modulators/pharmacology
18.
J Chem Phys ; 132(2): 024506, 2010 Jan 14.
Article in English | MEDLINE | ID: mdl-20095686

ABSTRACT

Intermolecular interaction potentials of the carbon tetrachloride dimer in 12 orientations have been calculated using the Hartree-Fock self-consistent theory and the second-order Moller-Plesset (MP2) perturbation theory. We have employed basis sets from Pople's medium size basis sets [up to 6-311++G(3df,3pd)] to Dunning's correlation consistent basis sets (up to aug-cc-pVQZ). The calculated MP2 potential data were employed to parametrize a four-site force field for molecular simulations. We performed molecular dynamics simulations using the ab initio force field and compared the simulation results to experiments. Quantitative agreements for the atomwise radial distribution functions, the self-diffusion coefficients, and the neutron and x-ray diffraction scattering functions over a wide range of experimental conditions can be obtained, thus validating the ab initio force field without using experimental data a priori.

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