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1.
Naturwissenschaften ; 111(2): 15, 2024 Mar 13.
Article in English | MEDLINE | ID: mdl-38478046

ABSTRACT

In Earth's history warm and cold periods have alternated. Especially, during the Pleistocene, the alternation between these different climatic conditions has led to frequent range expansions and retractions of many species: while thermophilic species dispersed during warm periods, cold adapted species retracted to cold refugia and vice versa. After the last Pleistocene cycle many cold adapted taxa found refuges in relict habitats in mountain ranges. One example for such a cold adapted relict is the flightless snow fly Chionea araneoides (Dalman, 1816). It can be found in lower mountain ranges of Central Europe exclusively in stone runs and stony accumulations which provide cold microclimates. Imagines develop only in winter. They have strongly restricted ranges and hence experienced strong isolation predicting that local populations may show local adaptation and hence also genetic differentiation. We investigated this for several middle mountain ranges of Germany using the COI barcoding gene. Our analyses revealed two distinct lineages, one in the Bavarian Forest and a second one in all other more northern locations up to Scandinavia. These lineages likely go back to post-Pleistocene isolation and should be studied in more detail in the future, also to confirm the taxonomic status of both lineages. Further, we confirmed former records of the species for Germany and report new records for the federal states of Saxony, Lower Saxony, Saxony-Anhalt and Thuringia. Finally, we provide the first evidence of two types of males for the species, a small and a larger male type.


Subject(s)
Diptera , Male , Animals , Phylogeny , Diptera/genetics , Ice , Genetic Variation , Snow
2.
Insects ; 15(2)2024 Feb 12.
Article in English | MEDLINE | ID: mdl-38392547

ABSTRACT

Mongolia, a country in central Asia, with its vast grassland areas represents a hotspot for Orthoptera diversity, especially for the Acrididae. For Mongolia, 128 Acrididae species have been documented so far, of which 41 belong to the subfamily Oedipodinae (band-winged grasshoppers). Yet, few studies concerning the distribution and diversity of Oedipodinae have been conducted in this country. Molecular genetic data is almost completely absent, despite its value for species identification and discovery. Even, the simplest and most used data, DNA barcodes, so far have not been generated for the local fauna. Therefore, we generated the first DNA barcode data for Mongolian band-winged grasshoppers and investigated the resolution of this marker for species delimitation. We were able to assemble 105 DNA barcode (COI) sequences of 35 Oedipodinae species from Mongolia and adjacent countries. Based on this data, we reconstructed maximum likelihood and Bayesian inference phylogenies. We, furthermore, conducted automatic barcode gap discovery and used the Poisson tree process (PTP) for species delimitation. Some resolution was achieved at the tribe and genus level, but all delimitation methods failed to differentiate species by using the COI region. This lack of resolution may have multiple possible reasons, which likely differ between taxa: the lack of resolution in the Bryodemini may be partially explained by their massive genomes, implying the potential presence of large numbers of pseudogenes, while within the Sphingonotini incomplete lineage sorting and incorrect taxonomy are more likely explanations for the lack of signal. Further studies based on a larger number of gene fragments, including nuclear DNA, are needed to distinguish the species also at the molecular level.

3.
Insects ; 14(12)2023 Dec 14.
Article in English | MEDLINE | ID: mdl-38132619

ABSTRACT

Habitat destruction and fragmentation are among the major current threats to global biodiversity. Fragmentation may also affect species with good dispersal abilities. We study the heath bushcricket Gampsocleis glabra, a specialist of steppe-like habitats across Europe that are highly fragmented, investigating if these isolated populations can be distinguished using population genomics and if there are any traces of admixture or dispersal among them. We try to answer these questions using genome-wide SNP data generated with ddRAD sequencing. We calculated F-statistics and visualized differentiation using STRUCTURE plots. While limited by the difficulty of sampling this threatened species, our results show that all populations except one that was represented by a singleton were clearly distinct, with pairwise FST values between 0.010 and 0.181. STRUCTURE indicated limited but visible admixture across most populations and probably also an exchange of individuals between populations of Germany and The Netherlands. We conclude that in G. glabra, a certain amount of gene flow has persisted, at least in the past, also among populations that are isolated today. We also detect a possibly more recent dispersal event between a population in The Netherlands and one in Germany, which may be human aided. We suggest that the conservation of larger populations should be maintained, that efforts should be taken to restore abandoned habitat, that the preservation even of small habitat fragments may be beneficial for the conservation of this species, and that these habitats should be regularly monitored for possible (re-)colonization.

4.
Ecol Appl ; 33(8): e2921, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37776039

ABSTRACT

Averting climate change-induced forest diebacks increasingly relies on tree species planted outside of their natural range and on the addition of non-native tree species to mixed-species forests. However, the consequences of such changes for associated biodiversity remain poorly understood, especially for the forest canopy as a largely understudied forest stratum. Here, we used flight interception traps and a metabarcoding approach to study the taxonomic and functional (trophic guilds) composition and taxon richness of canopy arthropods. We sampled 15 monospecific and mixed stands of native European beech, native Norway spruce-planted outside its natural range-and non-native Douglas fir in northwest Germany. We found that the diversity of arthropods was lower in non-native Douglas fir compared with native beech stands. Taxon richness of herbivores was reduced by both conifer species. Other functional guilds, however, were not affected by stand type. Arthropod composition differed strongly between native broadleaved beech and monospecific coniferous (native spruce or non-native Douglas fir) stands, with less pronounced differences between the native and non-native conifers. Beech-conifer mixtures consistently hosted intermediate arthropod diversity and community composition compared with the respective monospecific stands. Moreover, arthropod diversity had a positive relationship with the number of canopy microhabitats. Our study shows that considering arthropod taxa of multiple functional groups reveals the multifaceted impact of non-native tree species on forest canopy arthropod communities. Contrasting with previous studies that primarily focused on the forest floor, we found that native beech hosts a rich diversity of arthropods, compared with lower diversity and distinct communities in economically attractive, and especially in non-native, conifers with few canopy microhabitats. Broadleaf-conifer mixtures did not perform better than native beech stands, but mitigated the negative effects of conifers, making such mixtures a compromise to foster both forest-associated diversity and economic yield.


Subject(s)
Arthropods , Fagus , Picea , Pseudotsuga , Tracheophyta , Animals , Biodiversity , Germany , Herbivory
5.
Zootaxa ; 5267(1): 1-106, 2023 Apr 18.
Article in English | MEDLINE | ID: mdl-37518024

ABSTRACT

The African genus-group Metarbelodes Strand, 1909 of the family Metarbelidae comprises three genera: the monotypic Metarbelodes; Zambezia, gen. nov. with five new species (i.e., Zambezia diredaouaensis sp. nov.; Zambezia madambae sp. nov.; Zambezia jennyhuntae sp. nov.; Zambezia durrellbarnesi sp. nov.; Zambezia darrelplowesi sp. nov.); and Lukeniana, gen. nov. with 28 new species (i.e., Lukeniana enaiposha sp. nov.; Lukeniana raymondrevellii sp. nov.; Lukeniana rajaeii sp. nov.; Lukeniana tubiraensis sp. nov.; Lukeniana lutztoepferi sp. nov.; Lukeniana madrandelei sp. nov.; Lukeniana friederikebauerae sp. nov.; Lukeniana chapmani sp. nov.; Lukeniana michaelgrzimeki sp. nov.; Lukeniana kammeri sp. nov.; Lukeniana timdavenporti sp. nov.; Lukeniana mzuzuensis sp. nov.; Lukeniana mbalaensis sp. nov.; Lukeniana robplowesi sp. nov.; Lukeniana hausmanni sp. nov.; Lukeniana lenzi sp. nov.; Lukeniana stueningi sp. nov.; Lukeniana utaheidenreichae sp. nov.; Lukeniana georgeadamsoni sp. nov.; Lukeniana mikerobertsi sp. nov.; Lukeniana andreashempi sp. nov.; Lukeniana kakamegaensis sp. nov.; Lukeniana jankiellandi sp. nov.; Lukeniana bergsteni sp. nov.; Lukeniana carolae sp. nov.; Lukeniana stevecollinsi sp. nov.; Lukeniana butleri sp. nov.; Lukeniana kollhorsti sp. nov.), plus Lukeniana obliqualinea (Bethune-Baker, 1909), new comb. Metarbelodes is recorded only from the Bvumba Mountains in eastern Zimbabwe; Zambezia is represented by one species in the northern escarpment of the Harar Plateau (East-Central Ethiopia) and four species on the Southern African Plateau and the adjacent Bvumba Mountains; and Lukeniana occurs near the northern edge of the Southern African Plateau, but primarily in areas associated with the East African Rift System (EARS; both the Western and Eastern Branch). We provide detailed descriptions and images of all species and the first identification key. This revision represents the first comprehensive taxonomic treatment of the group and provides the basis for future work on this rare and cryptic, but diverse group of moth.


Subject(s)
Lepidoptera , Animals , Africa, Southern
6.
Zootaxa ; 5285(3): 511-556, 2023 May 17.
Article in English | MEDLINE | ID: mdl-37518693

ABSTRACT

The Afrotropical species hitherto considered to belong to the genera Paratettix Bolivar, 1887, Leptacrydium Chopard, 1950 and Hedotettix Bolivar, 1887 are reviewed, and two new genera, Alienitettix nov. gen. and Rectitettix nov. gen., are established. Four new species are described: Alienitettix usambarensis nov. sp., Leptacrydium femurcrassum nov. sp., Leptacrydium rhombeum nov. sp. and Rectitettix burri nov. sp. Several new combinations are created: Alienitettix gilloni (Günther, 1979) nov. comb. for Paratettix gilloni, Alienitettix villiersi (Günther, 1979) nov. comb. for Paratettix villiersi, Hippodes abidjanensis (Günther, 1979) nov. comb. for Coptotettix abidjanensis, Leptacrydium nanum (Bruner, 1910) nov. comb. for Tetrix nanus and Paratettix royi (Günther, 1979) nov. comb. for Leptacrydium royi. Paratettix angustivertex Bolivar, 1908 is resurrected. It is discussed whether the North American Tetrix arenosa (Burmeister, 1838) belongs to Tetrix and Tetrigini. The following synonyms are established: Coptotettix annulipes Karsch, 1890 nov. syn. and C. convexus Hancock, 1910 nov. syn. = C. rufipes Bolivar, 1887; Paratettix asbenensis Chopard, 1950 nov. syn. = P. pallipes (Walker, 1871); Telmatettix burri Hancock, 1900 nov.syn. and Paratettix macrostenus Günther, 1979 nov. syn. = Paratettix subpustulatus (Walker, 1871); Paratettix chopardi Günther, 1979 nov. syn. = P. africanus Bolivar, 1908; Paratettix marshalli Hancock, 1908 nov. syn. = Paratettix scaber (Thunberg, 1815); Paratettix obtusipulvillus Günther, 1979 nov. syn. = Paratettix spretus Günther, 1979; and Tettix waelboecki Bolivar, 1908 nov. syn. = Leptacrydium gratiosum (Karsch, 1893). Identification keys for all species and pictures of the majority of species are presented. New country records are given. New definitions of the pronotal forms in Tetrigidae are established based on their relationship to the fore (elytra) and hind wings (alae), with a new form, the pauropronotal, being introduced for the form where the fully functional hind wings are clearly longer than the pronotum; the new form is apomorphous for the Afrotropical Tetrigini. A provisional diagnosis for the (Afrotropical) Tetrigini is given. Coptotettix Bolivar, 1887 is removed from the Tetrigini and placed near Thoradontini and Criotettigini.

7.
Zootaxa ; 5258(3): 331-341, 2023 Mar 29.
Article in English | MEDLINE | ID: mdl-37044591

ABSTRACT

A new genus, Afrosystolederus, and a new species, Afrosystolederus garmsi, are described from Mount Gibi in Liberia. This African genus is most similar to Pseudosystolederus Günther, 1939 from Africa and Madagascar and to some members of Systolederus Bolivar, 1887 from Asia. The taxonomic difficulties of genera and species with a narrow fastigium are discussed. Teredorus aztecus nov.comb. is transferred from the genus Paratettix Bolivar, 1887. It is proposed to transfer all Indo-Malayan species from Teredorus Hancock, 1907 to Systolederus Bolivar, 1887, resulting in 26 new combinations and six replacement names: Systolederus albimarginus (Zheng & Zhou, 1996) nov. comb., Systolederus bashanensis (Zheng, 1993) nov. comb., Systolederus bhattacharyi (Shishodia, 1991) nov. comb., Systolederus bidentatus (Zheng, Huo & Zhang, 2000) nov. comb., Systolederus bipulvillus (Zheng, 2006) nov. comb., Systolederus brachynotoides Zheng, Ou & Lin, 2012 nov. comb., Systolederus brachynotus (Zheng & Xu, 2010) nov. comb., Systolederus camurimarginus (Zheng, 1998) nov. comb., Systolederus carmichaeli (Hancock, 1915) nov. comb., Systolederus chiangraensis (Za, Wen, Kang & Hyde, 2016) nov.comb., Systolederus combfemorus (Za, Wen, Kang & Hyde, 2016) nov. comb., Systolederus ebenotus (Zheng & Li, 2001) nov. comb., Systolederus eurylobatus (Zheng, Shi & Mao, 2010) nov. comb., Systolederus flatimarginus (Zheng & Liang, 2000) nov. comb., Systolederus flavistrial (Zheng, 2006) nov. comb., Systolederus frontalis (Hancock, 1915) nov.comb., Systolederus guizhouensis (Zheng, 1993) nov. comb., Systolederus hainanensis (Zheng, 1993) nov. comb., Systolederus longipulvillus (Zheng, 1988) nov. comb., Systolederus nigropennis (Deng, Zheng & Lu, 2013) nov. comb., Systolederus parvipulvillus (Deng, Lei & Zheng, 2014) nov. comb., Systolederus prominemarginis (Zheng & Jiang, 1993) nov. comb., Systolederus taibeiensis (Zheng & Xu, 2010) nov. comb., Systolederus xishuiensis (Zheng, Li & Shi, 2003) nov. comb. , Systolederus wuyishanensis (Zheng, 1993) nov. comb., Systolederus lii Devriese nov. nom., Systolederus lini Devriese nov.nom., Systolederus oui Devriese nov. nom., Systolederus rongduensis Devriese nov. nom., Systolederus yuanlingensis Devriese nov. nom., Systolederus zhengi Devriese nov. nom.


Subject(s)
Orthoptera , Animals , Liberia
8.
PLoS One ; 18(3): e0275551, 2023.
Article in English | MEDLINE | ID: mdl-36920952

ABSTRACT

Animal genomes vary widely in size, and much of their architecture and content remains poorly understood. Even among related groups, such as orders of insects, genomes may vary in size by orders of magnitude-for reasons unknown. The largest known insect genomes were repeatedly found in Orthoptera, e.g., Podisma pedestris (1C = 16.93 pg), Stethophyma grossum (1C = 18.48 pg) and Bryodemella holdereri (1C = 18.64 pg). While all these species belong to the suborder of Caelifera, the ensiferan Deracantha onos (1C = 19.60 pg) was recently found to have the largest genome. Here, we present new genome size estimates of 50 further species of Ensifera (superfamilies Gryllidea, Tettigoniidea) and Caelifera (Acrididae, Tetrigidae) based on flow cytometric measurements. We found that Bryodemella tuberculata (Caelifera: Acrididae) has the so far largest measured genome of all insects with 1C = 21.96 pg (21.48 gBp). Species of Orthoptera with 2n = 16 and 2n = 22 chromosomes have significantly larger genomes than species with other chromosome counts. Gryllidea genomes vary between 1C = 0.95 and 2.88 pg, and Tetrigidae between 1C = 2.18 and 2.41, while the genomes of all other studied Orthoptera range in size from 1C = 1.37 to 21.96 pg. Reconstructing ancestral genome sizes based on a phylogenetic tree of mitochondrial genomic data, we found genome size values of >15.84 pg only for the nodes of Bryodemella holdereri / B. tuberculata and Chrysochraon dispar / Euthystira brachyptera. The predicted values of ancestral genome sizes are 6.19 pg for Orthoptera, 5.37 pg for Ensifera, and 7.28 pg for Caelifera. The reasons for the large genomes in Orthoptera remain largely unknown, but a duplication or polyploidization seems unlikely as chromosome numbers do not differ much. Sequence-based genomic studies may shed light on the underlying evolutionary mechanisms.


Subject(s)
Grasshoppers , Orthoptera , Animals , Orthoptera/genetics , Phylogeny , Genome Size , Biological Evolution , Grasshoppers/genetics , Genome, Insect
9.
Insect Mol Biol ; 32(4): 387-399, 2023 08.
Article in English | MEDLINE | ID: mdl-36883292

ABSTRACT

Mitochondrial gene order has contributed to the elucidation of evolutionary relationships in several animal groups. It generally has found its application as a phylogenetic marker for deep nodes. Yet, in Orthoptera limited research has been performed on the gene order, although the group represents one of the oldest insect orders. We performed a comprehensive study on mitochondrial genome rearrangements (MTRs) within Orthoptera in the context of mitogenomic sequence-based phylogeny. We used 280 published mitogenome sequences from 256 species, including three outgroup species, to reconstruct a molecular phylogeny. Using a heuristic approach, we assigned MTR scenarios to the edges of the phylogenetic tree and reconstructed ancestral gene orders to identify possible synapomorphies in Orthoptera. We found all types of MTRs in our dataset: inversions, transpositions, inverse transpositions, and tandem-duplication/random loss events (TDRL). Most of the suggested MTRs were in single and unrelated species. Out of five MTRs which were unique in subgroups of Orthoptera, we suggest four of them to be synapomorphies; those were in the infraorder Acrididea, in the tribe Holochlorini, in the subfamily Pseudophyllinae, and in the two families Phalangopsidae and Gryllidae or their common ancestor (leading to the relationship ((Phalangopsidae + Gryllidae) + Trigonidiidae)). However, similar MTRs have been found in distant insect lineages. Our findings suggest convergent evolution of specific mitochondrial gene orders in several species, deviant from the evolution of the mitogenome DNA sequence. As most MTRs were detected at terminal nodes, a phylogenetic inference of deeper nodes based on MTRs is not supported. Hence, the marker does not seem to aid resolving the phylogeny of Orthoptera, but adds further evidence for the complex evolution of the whole group, especially at the genetic and genomic levels. The results indicate a high demand for more research on patterns and underlying mechanisms of MTR events in Orthoptera.


Subject(s)
Gryllidae , Mitochondria , Animals , Phylogeny , Gene Order , Mitochondria/genetics , Genomics , Evolution, Molecular
10.
Environ Entomol ; 51(4): 859-869, 2022 08 19.
Article in English | MEDLINE | ID: mdl-35797027

ABSTRACT

Helicoverpa armigera is one of the most destructive insect pests of economically valuable crops in the world. Despite its economic importance, the population genetic structure of this insect remains unexplored in Ethiopia. To investigate the genetic diversity and population structure of H. armigera, we sampled 170 individuals from 15 populations throughout Ethiopia. We sequenced a fragment of the mitochondrial cytochrome b (cyt b) gene and five exon-primed intron-crossing (EPIC) markers. Twenty cyt b haplotypes with low-to-moderate haplotype diversity (mean Hd = 0.537) and high nucleotide diversity (mean Pi = 0.00339) were identified. The most frequently observed and widely distributed cyt b haplotype was designated as Hap_1 (67.058%), which is identical to sequences found across the globe. Tajima's D and Fu's F for the cyt b data were negative, supporting a model of population expansion. Within populations, a mean of 2.493 alleles/locus was recorded across the five EPIC loci, ranging from 1.200 to 3.600 alleles/locus. The highest mean effective number of alleles/population was 2.369 and the lowest was 1.178. The mean observed heterozygosity (HO) of the five loci (0-0.289; mean 0.104 ± 0.020) was lower than the expected heterozygosity (HE) (0.095-0.523; mean 0.258 ± 0.028). AMOVA detected significant genetic structure with 61% of the total molecular genetic variation of EPIC genotypes occurring between populations, suggesting a considerable degree of differentiation among populations. STRUCTURE analyses clustered the H. armigera populations into three distinct population groups but very low isolation by distance (R2 = 0.0132, P < 0.05).


Subject(s)
Cytochromes b , Moths , Animals , Cytochromes b/genetics , Ethiopia , Genetic Variation , Haplotypes , Moths/genetics
11.
Sci Rep ; 12(1): 12013, 2022 07 19.
Article in English | MEDLINE | ID: mdl-35853951

ABSTRACT

Rivers are known to act as biogeographic barriers in several strictly terrestrial taxa, while possibly serving as conduits of dispersal for freshwater-tolerant or -dependent species. However, the influence of river systems on genetic diversity depends on taxa-specific life history traits as well as other geographic factors. In amphibians, several studies have demonstrated that river systems have only minor influence on their divergence. Here, we assess the role of the paleodrainage systems of the Sunda region (with a focus on the island of Sumatra) in shaping the evolutionary history of two genera of frogs (Sumaterana and Wijayarana) whose tadpoles are highly dependent on cascading stream habitats. Our phylogenetic results show no clear association between the genetic diversification patterns of both anurans genera and the existence of paleodrainage systems. Time-calibrated phylogenies and biogeographical models suggest that these frogs colonized Sumatra and diversified on the island before the occurrence of the Pleistocene drainage systems. Both genera demonstrate phylogenetic structuring along a north-south geographic axis, the temporal dynamics of which coincide with the geological chronology of proto Sumatran and -Javan volcanic islands. Our results also highlight the chronic underestimation of Sumatran biodiversity and call for more intense sampling efforts on the island.


Subject(s)
Biodiversity , Biological Evolution , Animals , Anura/genetics , Larva/genetics , Phylogeny , Phylogeography
12.
Zootaxa ; 5100(1): 129-136, 2022 Feb 17.
Article in English | MEDLINE | ID: mdl-35391084

ABSTRACT

The genus Thalpomena Saussure, 1884 is distributed in North Africa, Somalia and Ethiopia. It currently contains nine species, including one species with four subspecies; Seven of them (including one with four subspecies) are distributed in the Atlas Mountains, one in Libya and one (originally described in the genus Vosseleria) in the Somali Highlands. In this study, we propose taxonomic changes based on morphological, genetic, ecological and morphometric data from a previous study. The following species remain valid: Thalpomena algeriana (Lucas, 1849); Thalpomena azureipennis Uvarov, 1927; Thalpomena coerulescens Uvarov, 1923; Thalpomena dernensis (Werner, 1908); and Thalpomena viridipennis Uvarov, 1927. The following names are proposed here as junior synonyms of T. algeriana: Thalpomena algeriana intermedia Dirsh, 1949 (new synonym), Thalpomena algeriana montana Dirsh, 1949 (new synonym), Thalpomena coeruleipennis Finot, 1895 (new synonym), Thalpomena deserta Dirsh, 1949 (new synonym). Thalpomena rungsi Dirsh, 1949 is a new synonym of T. azureipennis; Thalpomena algeriana maroccana Dirsh, 1949 is a new synonym of T. viridipennis. The only East African representative of the genus, Thalpomena schulthessi (Uvarov, 1923), is transferred to the genus Vosseleriana (new combination).


Subject(s)
Grasshoppers , Animal Distribution , Animals
13.
Mol Phylogenet Evol ; 170: 107439, 2022 05.
Article in English | MEDLINE | ID: mdl-35189365

ABSTRACT

The phylogeny of many groups of Orthoptera remains poorly understood. Previous phylogenetic studies largely restricted to few mitochondrial markers found many species in the grasshopper subfamily Gomphocerinae to be para- or polyphyletic, presumably because of incomplete lineage sorting and ongoing hybridization between putatively young lineages. Resolving the phylogeny of the Chorthippus biguttulus species complex is important because many morphologically cryptic species occupy overlapping ranges across Eurasia and serve important ecological functions. We investigated whether multispecies coalescent analysis of 540 genes generated by transcriptome sequencing could resolve the phylogeny of the C. biguttulus complex and related Gomphocerinae species. Our divergence time estimates confirm that Gomphocerinae is a very young radiation, with an age estimated at 1.38 (2.35-0.77) mya for the C. biguttulus complex. Our estimated topology based on complete mitogenomes recovered some species as para- or polyphyletic. In contrast, the multispecies coalescent based on nuclear genes retrieved all species as monophyletic clusters, corroborating most taxonomic hypotheses. Our results underline the importance of using nuclear multispecies coalescent methods for studying young radiations and highlight the need of further taxonomic revision in Gomphocerinae grasshoppers.


Subject(s)
Grasshoppers , Orthoptera , Animals , Grasshoppers/genetics , Hybridization, Genetic , Mitochondria/genetics , Orthoptera/genetics , Phylogeny , Transcriptome
14.
Ecol Evol ; 11(20): 13723-13743, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34707813

ABSTRACT

Population genetics is a field of research that predates the current generations of sequencing technology. Those approaches, that were established before massively parallel sequencing methods, have been adapted to these new marker systems (in some cases involving the development of new methods) that allow genome-wide estimates of the four major micro-evolutionary forces-mutation, gene flow, genetic drift, and selection. Nevertheless, classic population genetic markers are still commonly used and a plethora of analysis methods and programs is available for these and high-throughput sequencing (HTS) data. These methods employ various and diverse theoretical and statistical frameworks, to varying degrees of success, to estimate similar evolutionary parameters making it difficult to get a concise overview across the available approaches. Presently, reviews on this topic generally focus on a particular class of methods to estimate one or two evolutionary parameters. Here, we provide a brief history of methods and a comprehensive list of available programs for estimating micro-evolutionary forces. We furthermore analyzed their usage within the research community based on popularity (citation bias) and discuss the implications of this bias for the software community. We found that a few programs received the majority of citations, with program success being independent of both the parameters estimated and the computing platform. The only deviation from a model of exponential growth in the number of citations was found for the presence of a graphical user interface (GUI). Interestingly, no relationship was found for the impact factor of the journals, when the tools were published, suggesting accessibility might be more important than visibility.

15.
Syst Parasitol ; 98(4): 487-501, 2021 08.
Article in English | MEDLINE | ID: mdl-34215970

ABSTRACT

Mites (Acari) represent important parasites for a diverse range of hosts. Within the Acari, the Prostigmata represent a diverse suborder of the order Trombidiformes with about 20 000 species, including parasitic forms on both vertebrates and invertebrates. Within the Prostigmata, the genus Locustacarus (Heterostigmata: Podapolipidae) is particularly known as an intratracheal parasite of bumblebees and grasshoppers. In a survey on prostigmatic mites (Acari: Trombidiformes: Prostigmata) associated with insects in the eastern parts of Iran, one new species of the endoparasitic Locustacarus was collected associated to the grasshopper Aiolopus thalassinus (Fabricius) (Orthoptera: Acrididae). This new species, Locustacarus aiolopi Rahmatzaei & Hajiqanbar n. sp., is described here and compared morphologically with other species of the genus. This new species represents the first record of a grasshopper-associated Locustacarus species in the Palearctic. We further provide a comprehensive review of the global distribution of this genus as well as its host range.


Subject(s)
Grasshoppers/parasitology , Host Specificity , Mites/classification , Animals , Iran , Mites/anatomy & histology , Species Specificity
16.
R Soc Open Sci ; 8(4): 201983, 2021 Apr 14.
Article in English | MEDLINE | ID: mdl-33996123

ABSTRACT

Changing species assemblages represent major challenges to ecosystems around the world. Retracing these changes is limited by our knowledge of past biodiversity. Natural history collections represent archives of biodiversity and are therefore an unparalleled source to study biodiversity changes. In the present study, we tested the value of natural history collections for reconstructing changes in the abundance and presence of species over time. In total, we scrutinized 17 080 quality-checked records for 242 epibenthic invertebrate species from the North and Baltic Seas collected throughout the last 200 years. Our approaches identified eight previously reported species introductions, 10 range expansions, six of which are new to science, as well as the long-term decline of 51 marine invertebrate species. The cross-validation of our results with published accounts of endangered species and neozoa of the area confirmed the results for two of the approaches for 49 to 55% of the identified species, and contradicted our results for 9 to 10%. The results based on relative record trends were less validated. We conclude that, with the proper approaches, natural history collections are an unmatched resource for recovering early species introductions and declines.

17.
PLoS One ; 16(4): e0250452, 2021.
Article in English | MEDLINE | ID: mdl-33861810

ABSTRACT

The Elbe is one of the longest European rivers and features a large, turbid and well-mixed estuary, which runs through the inner city of Hamburg. The Elbe has been closely monitored using classical catch techniques in the past. Here we tested a COI-based eDNA approach for assessing the biodiversity within the Elbe. We sampled three stations in the Elbe, included low and high tide events, as well as two adjoining lakes to compare the recovered faunas. To analyze the data, we employed two different pipelines: the automated mBRAVE pipeline utilizing the BOLD database and one including NCBI BLAST. The number of OTUs with species or higher-level identifications were similar between both approaches with 352 OTUs and 355 OTUs for BLAST and mBRAVE, respectively, however, BLAST searches recovered another 942 unidentified metazoan OTUs. Many taxa were well represented; however, fish species were poorly represented, especially in the Elbe estuary samples. This could be a result of the universal COI primers, which also yielded high read numbers for non-metazoan OTUs, and small-bodies taxa like Rotifera, which might have been sampled together with the eDNA. Our results show a strong tidal influence on the recovered taxa. During low tide, downstream stations resembled sites further upstream, but the former showed a very different OTU composition during high tide and early tide. Such differences might be due to varying impacts of upstream-originating eDNA during tide cycles. Such factors need to be considered when routinely employing eDNA for monitoring programs.


Subject(s)
DNA Barcoding, Taxonomic , Environmental Monitoring , Estuaries , Fishes/physiology , Animals , Biodiversity , Fishes/genetics , Germany , Lakes , Rivers
18.
Mitochondrial DNA B Resour ; 6(2): 456-457, 2021 Feb 09.
Article in English | MEDLINE | ID: mdl-33628886

ABSTRACT

We present four new complete mitochondrial genomes for Dasypoda hirtipes, Melitta schultzei, Capicola nanula and Samba griseonigra belonging to the basally branching bee family Melittidae covering four genera in three tribes (Melittini, Hesperaspini, Dasypodaini) and two subfamilies (Melittinae, Dasypodainae). The mitogenomes vary between 15,884 and 20,324 bp in length and consist of the typical set of 13 protein-coding genes, 22 tRNAs, two rRNAs and the control region. These new mitogenomes raise the number of available mitochondrial genomes for the family Melittidae to five and will help to shed light on the phylogenetic relationships within Melittidae and their position within the Anthophila.

19.
Sci Rep ; 11(1): 201, 2021 01 08.
Article in English | MEDLINE | ID: mdl-33420130

ABSTRACT

Glacial refugia are centers of high biodiversity. Therefore, knowledge on their locations and reactions of associated populations and landscapes to climatic changes is crucial for conservation management. We here investigated the biogeography of a butterfly species linked to open forest habitats. Using mitochondrial and nuclear markers in combination with Bayesian simulations, we analyzed the location and age of potential glacial refugia of the species. We identified five putative refugia in Europe. Considering the ecological needs of our study species, tree density within these refugial areas, in contrast to earlier assumptions, must have exceeded the level of individually scattered trees. Our results also provide evidence that especially the refuge areas in the Carpathians were previously underestimated regarding their age: the refugia in the Southern Carpathians presented suitable conditions throughout several glacial cycles, probably since the Mindel or Riss cycles. Additionally, our analyses provided support for a forest refugium near the Tatra Mountains persisting the last glacial maximum. Our results underline the usefulness of this and probably other butterfly species as indicators of forest refugia.


Subject(s)
Butterflies , Forests , Phylogeography , Animals , Butterflies/genetics , Ecosystem , Genetic Variation
20.
Nat Commun ; 11(1): 576, 2020 Jan 29.
Article in English | MEDLINE | ID: mdl-31996690

ABSTRACT

Urbanisation is an important global driver of biodiversity change, negatively impacting some species groups whilst providing opportunities for others. Yet its impact on ecosystem services is poorly investigated. Here, using a replicated experimental design, we test how Central European cities impact flying insects and the ecosystem service of pollination. City sites have lower insect species richness, particularly of Diptera and Lepidoptera, than neighbouring rural sites. In contrast, Hymenoptera, especially bees, show higher species richness and flower visitation rates in cities, where our experimentally derived measure of pollination is correspondingly higher. As well as revealing facets of biodiversity (e.g. phylogenetic diversity) that correlate well with pollination, we also find that ecotones in insect-friendly green cover surrounding both urban and rural sites boost pollination. Appropriately managed cities could enhance the conservation of Hymenoptera and thereby act as hotspots for pollination services that bees provide to wild flowers and crops grown in urban settings.


Subject(s)
Bees/physiology , Ecology , Insecta/physiology , Pollination , Urbanization , Animals , Bees/classification , Biodiversity , Cities , Diptera , Ecosystem , Flowers , Germany , Hymenoptera , Insecta/classification , Lepidoptera , Phylogeny
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