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1.
BMC Oral Health ; 24(1): 1077, 2024 Sep 12.
Article in English | MEDLINE | ID: mdl-39267015

ABSTRACT

NANOTECHNOLOGY: is the art and science of dealing with nanoscale particles. This has transformed contemporary dental practices through myriad contributions to biomaterial science. Titanium dioxide nanoparticles procured from Bacillus subtilis, an eco-friendly and biogenic source, can significantly magnify the physiochemical attributes of dental materials. However, postoperative sensitivity is a major drawback of composite restorations. The incorporation of these nanoparticles into dental adhesives can greatly benefit clinical dentistry by resolving this issue. This trial aimed to evaluate the effectiveness of a novel titanium dioxide nanofortified adhesive on the postoperative sensitivity of composite restorations. METHODS: This triple-blind, parallel-group randomized controlled trial was conducted at the Department of Operative Dentistry and Endodontics, School of Dentistry, Islamabad, from May 15, 2023, to November 25, 2023. Participants (n = 60) with Class I and II primary carious lesions with a minimum cavity depth of 3-5 mm were randomly assigned to two groups (n = 30). After obtaining informed consent, the restorative procedure was accomplished using a minimally invasive approach and etch-and-rinse adhesive strategy. In group A, a nanofortified adhesive was used for composite restoration, whereas in group B, an adhesive without nanoparticles was used. Postoperative sensitivity was evaluated using the Visual Analog Scale (VAS) score at follow-up periods: of one day, one week, two weeks and one month. A Chi-square test was used to compare postoperative sensitivity between the two groups. The level of significance was set at p < 0.05. RESULTS: A noteworthy association was observed between sensitivity and the group variable at all four evaluation periods: after one day (p = 0.002), 1 week (p = 0.002), 2 weeks (p = 0.007) and one month. In conclusion, participants who underwent restorative intervention using titanium dioxide nanoreinforced adhesives reported a notable reduction in sensitivity at all time intervals. Hence, the occurrence and severity of postoperative sensitivity are significantly reduced using Bacillus subtilis-procured nanofortified adhesives as compared to conventional adhesives without nanoparticles. TRIAL REGISTRATION: This trial was retrospectively registered at ClinicalTrials.gov (ID: NCT06242184) on 03/02/2024. All procedures involving human participants were performed in conformance with this protocol.


Subject(s)
Bacillus subtilis , Composite Resins , Dental Cements , Titanium , Humans , Bacillus subtilis/drug effects , Female , Male , Titanium/chemistry , Composite Resins/therapeutic use , Dental Cements/therapeutic use , Dentin Sensitivity/prevention & control , Nanoparticles , Dental Restoration, Permanent/methods , Dental Caries/prevention & control , Adolescent , Adult , Young Adult
2.
Heliyon ; 10(14): e34710, 2024 Jul 30.
Article in English | MEDLINE | ID: mdl-39148982

ABSTRACT

The increasing pressures of urban development and agricultural expansion have significant implications for land use and land cover (LULC) dynamics, particularly in ecologically sensitive regions like the Murree and Kotli Sattian tehsils of the Rawalpindi district in Pakistan. This study's primary objective is to assess spatial variations within each LULC category over three decades (1992-2023) using cross-tabulation in ArcGIS to identify changes in LULC and investigates into forest fragmentation analysis using the Landscape Fragmentation Tool (LFTv2.0) to classify forest into several classes such as patch, edge, perforated, small core, medium core, and large core. Utilizing remote sensing data from Landsat 5 and Landsat 9 satellites, the research focuses on the temporal dynamics in various land classes including Coniferous Forest (CF), Evergreen Forest (EF), Arable Land (AR), Buildup Area (BU), Barren Land (BA), Water (WA), and Grassland (GL). The Support Vector Machine (SVM) classifier and ArcGIS software were employed for image processing and classification, ensuring accuracy in categorizing different land types. Our results indicate a notable reduction in forested areas, with Coniferous Forest (CF) decreasing from 363.9 km2, constituting 45.0 % of the area in 1992, to 291.5 km2 (36.0 %) in 2023, representing a total decrease of 72.4 km2. Similarly, Evergreen Forests have also seen a significant reduction, from 177.9 km2 (22.0 %) in 1992 to 99.8 km2 (12.3 %) in 2023, a decrease of 78.1 km2. The study investigates into forest fragmentation analysis using the Landscape Fragmentation Tool (LFTv2.0), revealing an increase in fragmentation and a decrease in large core forests from 20.3 % of the total area in 1992 to 7.2 % in 2023. Additionally, the patch forest area increased from 2.4 % in 1992 to 5.9 % in 2023, indicating significant fragmentation. Transition matrices and a Sankey diagram illustrate the transitions between different LULC classes, providing a comprehensive view of the dynamics of land-use changes and their implications for ecosystem services. These findings highlight the critical need for robust conservation strategies and effective land management practices. The study contributes to the understanding of LULC dynamics and forest fragmentation in the Himalayan region of Pakistan, offering insights essential for future land management and policymaking in the face of rapid environmental changes.

3.
Pak J Med Sci ; 40(7): 1332-1337, 2024 Aug.
Article in English | MEDLINE | ID: mdl-39092050

ABSTRACT

Objective: To evaluate the clinical efficacy of novel titania-nanoparticle reinforced bonding agent on post-restorative sensitivity in patients. Methods: This triple-blinded, randomized clinical trial included participants (n = 60) having Class- I and II cavitations with a minimum cavity depth of 3mm at Department of Operative Dentistry & Endodontics, School of Dentistry, Shaheed Zulfiqar Ali Bhutto Medical University, Islamabad from January 5, 2023, to June 20, 2023. They were randomly assigned into two groups A and B (n = 30). After informed consent, restorative intervention was accomplished using an etch-and-rinse adhesive strategy. In Group-A, titania-nanoparticle-incorporated bonding agent was used for composite restoration, while in Group-B, bonding agent without nanoparticles was used. The primary outcome was assessed using Visual Analogue Scale mean score. Participants were instructed to rate their sensitivity status at follow-ups: 24 hours, one week, and one month. Mann-Whitney U test was employed to compare sensitivity between the two groups. Results: According to results of this trial, a significant difference was observed between two groups after 24 hours (p = 0.004) and one week (p = 0.002). However, no discernible difference was observed after one month (p = 0.643). Conclusion: Post-restorative sensitivity in patients with composite restorations was reduced using titania-reinforced bonding agents as compared to bonding agents without nanoparticles. This shows that inclusion of titania nanoparticles into adhesive dentistry could be beneficial in resolving post-restorative sensitivity occurring with composite restorations.

4.
Sci Rep ; 14(1): 11775, 2024 05 23.
Article in English | MEDLINE | ID: mdl-38783048

ABSTRACT

This study assesses the relationships between vegetation dynamics and climatic variations in Pakistan from 2000 to 2023. Employing high-resolution Landsat data for Normalized Difference Vegetation Index (NDVI) assessments, integrated with climate variables from CHIRPS and ERA5 datasets, our approach leverages Google Earth Engine (GEE) for efficient processing. It combines statistical methodologies, including linear regression, Mann-Kendall trend tests, Sen's slope estimator, partial correlation, and cross wavelet transform analyses. The findings highlight significant spatial and temporal variations in NDVI, with an annual increase averaging 0.00197 per year (p < 0.0001). This positive trend is coupled with an increase in precipitation by 0.4801 mm/year (p = 0.0016). In contrast, our analysis recorded a slight decrease in temperature (- 0.01011 °C/year, p < 0.05) and a reduction in solar radiation (- 0.27526 W/m2/year, p < 0.05). Notably, cross-wavelet transform analysis underscored significant coherence between NDVI and climatic factors, revealing periods of synchronized fluctuations and distinct lagged relationships. This analysis particularly highlighted precipitation as a primary driver of vegetation growth, illustrating its crucial impact across various Pakistani regions. Moreover, the analysis revealed distinct seasonal patterns, indicating that vegetation health is most responsive during the monsoon season, correlating strongly with peaks in seasonal precipitation. Our investigation has revealed Pakistan's complex association between vegetation health and climatic factors, which varies across different regions. Through cross-wavelet analysis, we have identified distinct coherence and phase relationships that highlight the critical influence of climatic drivers on vegetation patterns. These insights are crucial for developing regional climate adaptation strategies and informing sustainable agricultural and environmental management practices in the face of ongoing climatic changes.


Subject(s)
Climate , Seasons , Pakistan , Plant Development , Plants , Climate Change , Temperature , Environmental Monitoring/methods
5.
J Biomol Struct Dyn ; : 1-14, 2024 Jan 04.
Article in English | MEDLINE | ID: mdl-38178383

ABSTRACT

Marburg virus (MV) is a highly etiological agent of haemorrhagic fever in humans and has spread across the world. Its outbreaks caused a 23-90% human death rate. However, there are currently no authorized preventive or curative measures yet. VP40 is the MV matrix protein, which builds protein shell underneath the viral envelope and confers hallmark filamentous. VP40 alone is able to induce assembly and budding of filamentous virus-like particles (VLPs), which resemble authentic virions. As a result, this research is credited with clarifying the function of VP40 and leading to the discovery of new therapeutic targets effective in combating MV disease (MVD). Virtual screening, molecular docking and molecular dynamics (MD) simulation were used to find the putative active chemicals based on a 3D pharmacophore model of the protein's active site cavity. Initially, andrographidine-C, a potent inhibitor was selected for the development of the pharmacophore model. Later, a library of 30,000 compounds along with the andrographidine-C was docked against VP40 protein. Three best hits including avanafil, diuvaretin and macrourone were subjected to further MD simulation analysis, as these compounds had better binding affinities as compared to andrographidine-C. Furthermore, throughout the 100 ns simulations, the back bone of VP40 protein in presence of avanafil, diuvaretin and macrourone remained stable which was further validated by MM-PBSA analysis. Additionally, all of these compounds depict maximum drug-like properties. The predicted drugs based on the ligand, avanafil, diuvaretin and macrourone could be exploited and developed as an alternative or complementary therapy for the treatment of MVD.Communicated by Ramaswamy H. Sarma.

6.
Plant Cell Physiol ; 64(11): 1407-1418, 2023 Dec 06.
Article in English | MEDLINE | ID: mdl-37705247

ABSTRACT

Crocus sativus has emerged as an important crop because it is the only commercial source of saffron that contains unique apocarotenoids. Saffron is composed of dried stigmas of Crocus flower and constitutes the most priced spice of the world. Crocus floral organs are dominated by different classes of metabolites. While stigmas are characterized by the presence of apocarotenoids, tepals are rich in flavonoids and anthocyanins. Therefore, an intricate regulatory network might play a role in allowing different compounds to dominate in different organs. Work so far done on Crocus is focussed on apocarotenoid metabolism and its regulation. There are no reports describing the regulation of flavonoids and anthocyanins in Crocus tepals. In this context, we identified an R2R3 transcription factor, CstMYB16, which resembles subgroup 4 (SG4) repressors of Arabidopsis. CstMYB16 is nuclear localized and acts as a repressor. Overexpression of CstMYB16 in Crocus downregulated anthocyanin biosynthesis. The C2/EAR motif was responsible for the repressor activity of CstMYB16. CstMYB16 binds to the promoter of the anthocyanin biosynthetic pathway gene (LDOX) and reduces its expression. CstMYB16 also physically interacts with CstPIF4, which in turn is regulated by temperature and circadian clock. Thus, CstPIF4 integrates these signals and forms a repressor complex with CstMYB16, which is involved in the negative regulation of anthocyanin biosynthesis in Crocus. Independent of CstPIF4, CstMYB16 also represses CstPAP1 expression, which is a component of the MYB-bHLH-WD40 (MBW) complex and positively controls anthocyanin biosynthesis. This is the first report on identifying and describing regulators of anthocyanin biosynthesis in Crocus.


Subject(s)
Arabidopsis , Crocus , Crocus/genetics , Crocus/metabolism , Anthocyanins/metabolism , Carotenoids/metabolism , Temperature , Flavonoids/metabolism , Arabidopsis/metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism
7.
PLoS One ; 18(4): e0284244, 2023.
Article in English | MEDLINE | ID: mdl-37053209

ABSTRACT

Plant derived compounds have always been an important source of medicines and have received significant attention in recent years due to their diverse pharmacological properties. Millions of plant-based herbal or traditional medicines are used to cure various types of cancers especially due to activation of proliferative genes. The aim of the present study was to characterize the altered and attenuated gene expression of the selected growth factor namely Transforming growth factor Beta -1 (TGFß1) and MYC in human hepatoma-derived (Huh7) liver cancer cell lines in response to extracts of Artemisia absinthium dissolved in selected organic solvents. Ethanolic, methanolic and acetone extract of different plant parts (leaf, stem and flowers) was used to access the antiproliferative activity by MTT (3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide) assay. Quantitative Real-Time RT-PCR revealed that the transcript levels of TGFß1 are induced in the samples treated with methanolic extract of Artemisia absinthium. Furthermore, reduced expression levels of MYC gene was noticed in cancerous cells suggesting antiproliferative properties of the plant. This study further highlights the resistance profile of various microbes by antimicrobial susceptibility test with plant extracts. In addition, antidiabetic effect of Artemisia absinthium have also shown positive results. Our study elucidates the potentials of Artemisia absinthium as a medicinal plant, and highlights the differential expression of genes involved in its mitogenic and anti-proliferative activity with a brief account of its pharmacological action.


Subject(s)
Artemisia absinthium , Artemisia , Liver Neoplasms , Plants, Medicinal , Humans , Liver Neoplasms/drug therapy , Liver Neoplasms/genetics , Plant Extracts/pharmacology , Solvents , Genes, myc , Transforming Growth Factor beta1/metabolism
8.
Article in English | MEDLINE | ID: mdl-36964469

ABSTRACT

The environment's quality is the cornerstone for every country's long-term growth. Pakistan, like other countries, is embracing modern, efficient technologies to build a sustainable environment following the SDGs. In this situation, policymakers and experts have emphasized more on environmental factors. To do this, the study explores the impact of green innovation (GI), public-private partnerships in energy (PPP), energy use (EU), economic development (ED), and power prices (PP) on CO2 emissions in Pakistan from 1980 to 2019. The research uses a novel econometric technique for estimating environmental factors, notably the dynamic autoregressive distributed lag simulations (ARDLS) model and spectral frequency domain causality (SFDC), to examine positive and negative shocks for the prediction of the short-, medium-, and long-run impact of selected determinants, respectively. Additionally, robustness checks were performed using the fully modified OLS (FMOLS), dynamic OLS (DOLS), and canonical cointegrating regression (CCR) estimations. The short and long-term empirical findings indicate that GI lowers emissions; nevertheless, PPP, EU, and ED have a significant impact on emissions in the short run, while the EU increases emissions in the long run. PP, on the other hand, reduces emissions both short and long-term. The FMOLS, DOLS, and CCR estimations indicate significant discoveries. Additionally, the SFDC finding supports the long, medium, and short-term causation theories. This research advocates green innovation for a greener manufacturing process and PPP investment in renewable energy. In addition, the Pakistani government considers these variables while designing a comprehensive protracted environmental plan to meet SDGs 7 and 13.

9.
Chemosphere ; 316: 137878, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36646179

ABSTRACT

There is a dire need of air quality monitoring in the high-mountain areas of Karakoram-Hindu Kush-Himalaya (HKH) region, particularly related to the recent activities undergoing the China-Pakistan Economic Corridor (CPEC). This study presents the first baseline monitoring and evaluation findings from Gilgit city, Gilgit-Baltistan. Hourly data collection for air quality parameters (PM2.5, NO, NO2, SO2, O3 and CO) were measured using air-pointer (recordum, Austria) from 1 Jan 2018 to 31 Mar 2018 (winter) and 1 Jun 2018 to 31 Aug 2018 (summer). Our findings depict PM2.5 health limits were crossed in the winter season, while NO, NO2 and SO2 remained below their health limits. O3 and CO showed a rising trend in summer months, crossing the 8-h health limits during the season. Seasonal correlation in meteorology found an inverse relationship between most parameters and temperatures; reverse was true for O3 and CO. In parallel, thermal optical carbon analysis filter-based sampling characterized air quality into mass concentrations of PM2.5, organic carbon (OC), elemental carbon (EC) and various heavy metals. Filter-based PM2.5 correlated well with analyzer-based PM2.5 for all months that were studied, except February and March 2018. PM2.5, OC and EC were higher in summer as compared to winter, whereas higher heavy metal contributions were measured predominantly during summer. Health impacts were found to be above health limits for Ni in children only. Furthermore, principal component analysis-multiple linear regression (PCA-MLR) technique was applied to determine source apportionment, confirming the role of biomass burning in winters, and vehicular emissions in summers, highlighting the need for flexible monitoring of technologies/approaches, and communications among the various public, private agencies, and all relevant stakeholders.


Subject(s)
Air Pollutants , Air Pollution , Child , Humans , Air Pollutants/analysis , Seasons , Particulate Matter/analysis , Nitrogen Dioxide/analysis , Pakistan , Environmental Monitoring/methods , Air Pollution/analysis , Vehicle Emissions/analysis , Carbon/analysis , Aerosols/analysis
10.
PeerJ ; 10: e14281, 2022.
Article in English | MEDLINE | ID: mdl-36405014

ABSTRACT

Background: Begomovirus is one of the most devastating pathogens that can cause more than 90% yield loss in various crop plants. The pathogenicity determinant ßC1, located on the betasatellite associated with monopartite begomoviruses, alters the host signaling mechanism to enhance the viral disease phenotype by undermining the host immunity. The understanding of its interacting proteins in host plants to develop disease symptoms such as curly leaves, enations, vein swelling, and chlorosis is crucial to enhance the disease resistance in crop plants. The current study was designed to reveal the contribution of ßC1 in disease pathogenicity and to unveil potential interacting partners of ßC1 protein in the model plant Nicotiana benthamiana. Methods: The ßC1 gene was cloned in pGKBT7 and used as bait against the cDNA library of N. benthamiana and its pathogenesis was tested against the healthy plant and the plants infiltrated with empty vectors. The yeast two-hybrid-based screening was performed to find the interacting factors. Successful interacting proteins were screened and evaluated in various steps and confirmed by sequence analysis. The three-dimensional structure of the Nuclear Transport Factor 2 (NTF2) protein was predicted, and in-silico protein-protein interaction was evaluated. Furthermore, protein sequence alignment and molecular phylogenetic analysis were carried out to identify its homologues in other related families. In-silico analyses were performed to validate the binding affinity of ßC1 protein with NTF2. The 3D model was predicted by using I-TASSER and then analyzed by SWISS MODEL-Workspace, RAMPAGE, and Verify 3D. The interacting amino acid residues of ßC1 protein with NTF2 were identified by using PyMOL and Chimera. Results: The agroinfiltrated leaf samples developed severe phenotypic symptoms of virus infection. The yeast-two-hybrid study identified the NTF2 as a strong interacting partner of the ßC1. The NTF2 in Solanaceae and Nicotiana was found to be evolved from the Brassica and Gossypium species. The in-silico interaction studies showed a strong binding affinity with releasing energy value of -730.6 KJ/mol, and the involvement of 10 amino acids from the middle portion towards the C-terminus and five amino acid residues from the middle portion of ßC1 to interact with six amino acids of NTF2. The study not only provided an insight into the molecular mechanism of pathogenicity but also put the foundation stone to develop the resistance genotypes for commercial purposes and food security.


Subject(s)
Nicotiana , Saccharomyces cerevisiae , Nicotiana/genetics , Virulence , Phylogeny , Active Transport, Cell Nucleus , Amino Acids/genetics
11.
Plants (Basel) ; 11(22)2022 Nov 18.
Article in English | MEDLINE | ID: mdl-36432886

ABSTRACT

During the growing season of 2021-2022, a total of 145 symptomatic tomato leaf and fruit samples were collected from different locations in Riyadh Region, Saudi Arabia, showing a moderate-to-severe mosaic with dark green wrinkling, blistering, narrowing, and deformation with necrosis spot on tomato leaves, while irregular brown necrotic lesions, deformation, and yellowing spots rendering the fruits non-marketable were observed on tomato fruits. These samples were tested serologically against important tomato viruses using enzyme-linked immunosorbent assay (ELISA), and the obtained results showed that 52.4% of symptomatic tomato samples were found positive for Tomato brown rugose fruit virus (ToBRFV), wherein 12 out of 76 samples were singly infected; however, 64 out of 145 had mixed infection. A sample with a single infection of ToBRFV was used for mechanical inoculation into a range of different host plants; symptoms were observed weekly, and the presence of the ToBRFV was confirmed by ELISA and reverse transcription-polymerase chain reaction (RT-PCR). A total RNA was extracted from selected ELISA-positive samples, and RT-PCR was carried out using specific primers F-3666 and R-4718, which amplified a fragment of 1052 bp. RT-PCR products were sequenced in both directions, and partial genome nucleotide sequences were submitted to GenBank under the following accession numbers: MZ130501, MZ130502, and MZ130503. BLAST analysis of Saudi isolates of ToBRFV showed that the sequence shared nucleotide identities (99-99.5%) among them and 99-100% identity with ToBRFV isolates in different countries. A ToBRFV isolate (MZ130503) was selected for mechanical inoculation and to evaluate symptom severity responses of 13 commonly grown tomato cultivars in Saudi Arabia. All of the tomato cultivars showed a wide range of symptoms. The disease severity index of the tested cultivars ranged between 52% and 96%. The importance ToBRFV disease severity and its expanding host range due to its resistance breaking ability was discussed.

12.
Physiol Plant ; 174(3): e13712, 2022 May.
Article in English | MEDLINE | ID: mdl-35561087

ABSTRACT

Reactive oxygen species (ROS) behave as signaling molecules and induce biosynthesis of many secondary metabolites, including apocarotenoids, which play critical roles in stress tolerance through radical scavenging. However, the mechanism that regulates ROS responsive apocarotenoid metabolism and subsequent stress response is unknown. In this study, an R2R3-MYB transcription factor (CstMYB14) was identified from Crocus sativus L., which acts as a regulator of apocarotenoid biosynthesis. CstMYB14 expression increases in response to H2 O2 in a concentration and time-dependent manner. CstMYB14 localizes to the nucleus and acts as a transcriptional activator. Over-expression of CstMYB14 in Crocus stigmas enhanced apocarotenoid biosynthesis. Yeast-one-hybrid demonstrated binding of CstMYB14 to promoters of two apocarotenoid pathway genes (phytoene synthase and carotenoid cleavage dioxygenase 2). Nicotiana benthamiana plants overexpressing CstMYB14 showed better growth and higher stress tolerance than wild type plants. Higher antioxidant activity in CstMYB14-Ox plants indicated that stress tolerance might be due to ROS scavenging. These results establish a molecular link between ROS signaling, apocarotenoid metabolism and stress tolerance. Further, CstMYB14 is shown to act as a key regulator which modulates ROS responsive biosynthesis of apocarotenoids which in turn impart stress tolerance through ROS scavenging.


Subject(s)
Crocus , Dioxygenases , Crocus/genetics , Crocus/metabolism , Dioxygenases/genetics , Dioxygenases/metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Reactive Oxygen Species/metabolism , Stress, Physiological , Transcription Factors/genetics , Transcription Factors/metabolism
13.
Cell Mol Biol (Noisy-le-grand) ; 68(9): 129-134, 2022 Sep 30.
Article in English | MEDLINE | ID: mdl-36905263

ABSTRACT

Begomovirus is the largest genus in the family Geminiviridae and constitutes more than 445 virus species. Begomoviruses are characterized by single-stranded circular genomes with monopartite or bipartite components and transmitted by whitefly (Bemisia tabaci). Begomoviruses cause severe diseases in many economically important crops throughout the world. Typical symptoms of a begomovirus infection including severe leaf curling, vein thickening, vein darkening and reduced leaf size were observed in papaya plants in the Dammam district of the Eastern Province of Saudi Arabia during the growing season in 2022. A total of 10 samples were collected, and total genomic DNA was isolated from naturally infected papaya tree samples and subjected to PCR amplification using universal diagnostic primers for begomoviruses and associated satellites. Three PCR-amplified genomic components of begomoviruses and betasatellite namely P61Begomo (645 bp), P62Begomo (341 bp) and P62Beta (563 bp) were sent for Sanger DNA sequencing to Macrogen Inc. These partial viral genome sequences were submitted to Genbank database and accession numbers ON206051, ON206052 and ON206050 were assigned to P61Begomo, P62Begomo and P62Beta respectively. Phylogenetic analysis and pairwise nucleotide sequence identity studies identified P61Begomo was identified as Tomato yellow leaf curl virus, P62Begomo as DNA A component of a bipartite begomovirus Watermelon chlorotic stunt virus and P62Beta as begomovirus associated betasatellite; Cotton leaf curl Gezira betasatellite. To the best of our knowledge, this is the first report of a begomovirus complex infecting papaya (Carica papaya) in the Kingdom of Saudi Arabia.


Subject(s)
Begomovirus , Carica , Carica/genetics , Begomovirus/genetics , Saudi Arabia , Phylogeny , Plant Diseases , DNA
14.
Microsc Res Tech ; 85(2): 623-629, 2022 Feb.
Article in English | MEDLINE | ID: mdl-34528741

ABSTRACT

Present research work was carried out to clarify the variations among species of genus Paspalum morphologically and palynologically as this genus is taxonomically difficult due to having multiple similar morphologically overlapping characters which make it difficult to identify. Henceforth present research work was carried out to delimit taxa within the same genus by morphological and palynological tools through light microscopy (LM) and scanning electron microscopy (SEM). Both these tools are considered as the most useful taxonomic characters for taxonomically problematic genera. The results showed a lot of variations among morphological characters. In Paspalum dilatatum, the upper glume was ovate whereas in the other two species, the upper glume was elliptic. The upper glume apex found in P. dilatatum and Paspalum scrobiculatum was obtuse whereas in Paspalum distichum, upper glume apex was acute. Glume nerves showed variation in all three species. Paspalum distichum was 3 nerved, P. scrobiculatum was 5-7 nerved, and P. dilatatum was 5-9 nerved. All three species showed variation in lemma nerves. Paspalum scrobiculatum had 3 nerved lemma whereas in P. distichum 3-5 nerved and P. dilatatum 5-9 nerved lemma were present. In polar and equatorial view, pollen grains ranged from 25 (20-30) to 37.5 (30-45) µm. Paspalum distichum appeared to be the smallest in size whereas P. dilatatum was the largest. Exine thickness ranged from 0.75 (0.5-1) to 1.35 (1.2-1.5) µm. The higher value of pollen fertility was found in P. scrobiculatum as 87.69% and the lowest value was in P. distichum as 78.08%. Morphological keys were also given for correct identification.


Subject(s)
Paspalum , Microscopy, Electron, Scanning , Pollen
15.
Materials (Basel) ; 14(22)2021 Nov 15.
Article in English | MEDLINE | ID: mdl-34832298

ABSTRACT

The purpose of this research is to study the effects of quarry rock dust (QRD) and steel fibers (SF) inclusion on the fresh, mechanical, and microstructural properties of fly ash (FA) and ground granulated blast furnace slag (SG)-based geopolymer concrete (GPC) exposed to elevated temperatures. Such types of ternary mixes were prepared by blending waste materials from different industries, including QRD, SG, and FA, with alkaline activator solutions. The multiphysical models show that the inclusion of steel fibers and binders can enhance the mechanical properties of GPC. In this study, a total of 18 different mix proportions were designed with different proportions of QRD (0%, 5%, 10%, 15%, and 20%) and steel fibers (0.75% and 1.5%). The slag was replaced by different proportions of QRD in fly ash, and SG-based GPC mixes to study the effect of QRD incorporation. The mechanical properties of specimens, i.e., compressive strength, splitting tensile strength, and flexural strength, were determined by testing cubes, cylinders, and prisms, respectively, at different ages (7, 28, and 56 days). The specimens were also heated up to 800 °C to evaluate the resistance of specimens to elevated temperature in terms of residual compressive strength and weight loss. The test results showed that the mechanical strength of GPC mixes (without steel fibers) increased by 6-11%, with an increase in QRD content up to 15% at the age of 28 days. In contrast, more than 15% of QRD contents resulted in decreasing the mechanical strength properties. Incorporating steel fibers in a fraction of 0.75% by volume increased the compressive, tensile, and flexural strength of GPC mixes by 15%, 23%, and 34%, respectively. However, further addition of steel fibers at 1.5% by volume lowered the mechanical strength properties. The optimal mixture of QRD incorporated FA-SG-based GPC (QFS-GPC) was observed with 15% QRD and 0.75% steel fibers contents considering the performance in workability and mechanical properties. The results also showed that under elevated temperatures up to 800 °C, the weight loss of QFS-GPC specimens persistently increased with a consistent decrease in the residual compressive strength for increasing QRD content and temperature. Furthermore, the microstructure characterization of QRD blended GPC mixes were also carried out by performing scanning electron microscopy (SEM), X-ray diffraction (XRD), and energy dispersive spectroscopy (EDS).

16.
Microsc Res Tech ; 84(12): 3035-3043, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34213034

ABSTRACT

Paspalum is one of the 10 largest genera in Poaceae and is considered as a complex and taxonomically difficult genus due to its similar morphological characters within the species which makes it difficult to delimit taxa within the same genus. The current research work establishes the distinction among species of this genus and resolves taxonomic confusions among this genus. And this distinction is done by micro morphological foliar anatomical characterization by light and scanning electron microscopy. Both the abaxial and adaxial epidermal cuticles of three different species of genus Paspalum were studied and their phytoliths were observed through elemental dispersive spectrophotometric analysis by SEM first time in Pakistan. Results showed great variation in studied anatomical features. P. dilatatum Poir. was comprised of macro-hairs in the intercostal regions only whereas no macro-hairs were found in P. distichum Linn. and P. scrobiculatum Linn. Beak-shaped prickles were found in the intercostal regions on adaxial surface only in P. distichum Linn. and P. scrobiculatum Linn. whereas in P. dilatatum Poir., knife-shaped prickles were present in intercostal regions only on both abaxial and adaxial surfaces of leaf epidermis. No papillae were seen in P. dilatatum Poir whereas in P. distichum Linn. and P. scrobiculatum Linn. papillae were found abundantly. In genus paspalum, P. dilatatum Poir. phytoliths showed lowest mass percentage of silicon as 15.13% whereas P. distichum Linn. phytoliths showed highest mass percentage of silicon as 22.00%. Based on micro morphological foliar characteristics a taxonomic key of studied species is also provided to delimit the taxa.


Subject(s)
Paspalum , Plant Epidermis , Microscopy, Electron, Scanning , Plant Leaves , Plant Stomata
17.
Microsc Res Tech ; 84(10): 2286-2290, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33876882

ABSTRACT

Grass taxonomy is quite problematic and insignificant taxonomic work has been done on Echinochloa with special reference to Pakistan. Therefore, the present study was carried out to provide taxonomic keys for the identification of this genus through microscopic epidermal leaf anatomical parameters. Light microscopy and scanning electron microscopy were done to delimit the different species. Special structures like hook cells, short and long cells, stomata, macro- and micro-hairs, prickles and silica bodies showed a lot of variation among each species. For instance, E. frumentacea can be distinguished from E. walteri by the presence of macro hairs between the veins. Furthermore, E. crus-galli can be distinguished from E. frumentacea in terms of macro hair size, that is, 45-60 µm and 20-60 µm, respectively. Similarly, E. colona showed marked variations in terms of prickles abundance from E. frumentacea. Overall results of this research reports valuable qualitative and quantitative diagnostic futures for the genus Echinochloa.


Subject(s)
Echinochloa , Plant Epidermis , Electrons , Microscopy, Electron, Scanning , Pakistan , Plant Leaves , Plant Stomata
19.
Environ Sci Pollut Res Int ; 28(23): 29110-29116, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33550557

ABSTRACT

The instant endeavor was undertaken to monitor copper (Cu) contents in water, soil, forage, and cow's blood impacted by heavy automobiles in Sahiwal town of district Sargodha, Pakistan. The samples were collected in triplicates with a total of 120 soil and water samples with corresponding forage samples. For the analysis of metal concentration in cows, 60 blood samples were collected from the cows feeding on these forages on selected sites. Metal contents were analyzed by atomic absorption spectrophotometry. The results showed that water samples contained mean values of Cu concentration ranged from 1.01 to 0.444 mg/kg at all sites. It was maximum at site 3 and minimum at site 6. The soil samples of all the forage fields showed Cu mean values concentration ranged from 1.94 to 0.286 mg/kg at all sites. It was maximum in Trifolium alexandrinum grown field at site 2, and minimum in Avena sativa at site 2. All the forage samples showed the mean value of Cu concentration ranged from 0.151 to 1.86 mg/kg at all sites. The concentration of Cu was maximum in Zea mays grown at site 5 and minimum in Trifolium alexandrinum at site 4. The cow blood samples showed the mean concentration of Cu ranged from 1.368 to 0.53 mg/kg at all sites. It was maximum at site 2 and minimum at site 6. Owing to the results of pollution index and transfer factors, metal content was found to be in permissible range in forages as well as animal samples.


Subject(s)
Metals, Heavy , Soil Pollutants , Animals , Automobiles , Cattle , Copper , Environmental Monitoring , Metals, Heavy/analysis , Pakistan , Soil , Soil Pollutants/analysis , Water
20.
Microsc Res Tech ; 84(5): 850-859, 2021 May.
Article in English | MEDLINE | ID: mdl-33206436

ABSTRACT

The present study was carried out on scanning electron microscopic-based palynological characterization of selected 20 Euphorbiaceae taxa. In this study, important pollen qualitative and quantitative features of selected Euphorbiaceae species such as polar diameter, equatorial diameter, P/E ratio, sculpturing of pollen, exine thickness, intine thickness, presence or absence of colpi and length of colpi, and pollen fertility were examined. Remarkable variations in these pollen characters had been observed among these species. In both polar and equatorial views, Riccinus communis L. exhibited the highest pollen size (polar = 264.1 µm, Equatorial = 270 µm), while Acalypha wilkesiana Mull Arg. showed lowest pollen size (Polar = 17 µm, Equatorial = 18.5 µm). Most of the pollen varied from oblate to spheroidal in shape. With regard to the P/E ratio, Sapium sebiferum L. Roxb showed the highest ratio while Bischofia javanica Blume showed minimum, that is, 1.18 and 0.85, respectively. Intine and exine thickness also varied. Most of the pollen grains were monade. Tricolporate, tricolpate, monocolpate, pentaporate, and polyporate pollen aperture types have been observed. Most of the plants showed regular, reticulate, and echinate pollen sculpturing. Pollen fertility also varied from species to species but most of the plant showed pollen fertility between 70 and 80%. Through this work, it has been concluded that quantitative and qualitative pollen features are helpful at the specific level as well as the generic level and can provide a fruitful taxonomic solution.


Subject(s)
Euphorbiaceae , Microscopy, Electron, Scanning , Pakistan , Pollen
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