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1.
Sci Rep ; 8(1): 4402, 2018 03 13.
Article in English | MEDLINE | ID: mdl-29535356

ABSTRACT

Lignocellulosic biomass (LCB) is a low-cost and abundant source of fermentable sugars. Enzymatic hydrolysis is one of the main ways to obtain sugars from biomass, but most of the polysaccharide-degrading enzymes are poorly efficient on LCB and cellulases with higher performances are required. In this study, we designed a chimeric protein by adding the carbohydrate binding module (CBM) of the cellulosomal enzyme CtLic26A-Cel5E (endoglucanase H or CelH) from Clostridium (Ruminiclostridium) thermocellum to the C-terminus of Dtur CelA, an interesting hyperthermostable endoglucanase from Dictyoglomus turgidum. The activity and binding rate of both native and chimeric enzyme were evaluated on soluble and insoluble polysaccharides. The addition of a CBM resulted in a cellulase with enhanced stability at extreme pHs, higher affinity and activity on insoluble cellulose.


Subject(s)
Carbohydrate Metabolism , Cellulase/genetics , Cellulase/metabolism , Clostridium thermocellum/genetics , Clostridium thermocellum/metabolism , Amino Acid Sequence , Base Sequence , Cellulase/isolation & purification , Enzyme Activation , Gene Expression , Genetic Engineering , Hydrogen-Ion Concentration , Kinetics , Recombinant Fusion Proteins , Solubility , Temperature
2.
J Biotechnol ; 270: 21-29, 2018 Mar 20.
Article in English | MEDLINE | ID: mdl-29409863

ABSTRACT

Lignocellulose degradation is a challenging step for value added products and biofuels production. Cellulomonas fimi secretes complex mixtures of carbohydrate active enzymes (CAZymes) which synergistically degrade cellulose and hemicelluloses. Their characterization may provide new insights for enzymatic cocktails implementation. Bioinformatic analysis highlighted 1127 secreted proteins, constituting the in silico secretome, graphically represented in a 2DE map. According to Blast2GO functional annotation, many of these are involved in carbohydrates metabolism. In vivo secretomes were obtained, growing C. fimi on glucose, CMC or wheat straw for 24 h. Zymography revealed degradative activity on carbohydrates and proteomic analysis identified some CAZymes, only in secretomes obtained with CMC and wheat straw. An interaction between cellobiohydrolases is proposed as a strategy adopted by soluble multimodular cellulases. Such approach can be crucial for a better characterization and industrial exploitation of the synergism among C. fimi enzymes.


Subject(s)
Cellulomonas/growth & development , Enzymes/metabolism , Lignin/chemistry , Bacterial Proteins/metabolism , Carbohydrate Metabolism , Cellulomonas/enzymology , Cellulomonas/metabolism , Cellulose 1,4-beta-Cellobiosidase/metabolism , Computer Simulation , Protein Interaction Maps , Proteomics , Triticum/chemistry
3.
Ital J Pediatr ; 42: 36, 2016 Apr 07.
Article in English | MEDLINE | ID: mdl-27056486

ABSTRACT

BACKGROUND: The most widespread method for the treatment of donor milk is the Holder pasteurization (HoP). The available literature data show that HoP may cause degradation of some bioactive components. The aim of this study was to determine the effect of HoP on the protein profile of human milk (HM) using a GeLC-MS method, a proteomic approach and a promising technique able to offer a qualitative HM protein profile. METHODS: HM samples were collected by standardized methods from 20 mothers carrying both preterm and term newborns. A aliquot of each sample was immediately frozen at -80 °C, whilst another one was Holder pasteurized and then frozen. All samples were then analyzed by GeLC-MS. The protein bands of interest were excised from the gel, digested with trypsin and identified by nano-HPLC-MS/MS analysis. RESULTS: The protein profile before and after HoP showed qualitative differences only in 6 samples out of 20, while in the remaining 14 no detectable differences were found. The differences interested only colostrums and transitional milk samples and regarded the decrease of the electrophoretic bands corresponding to alpha and beta-casein, tenascin, lactoferrin and immunoglobulin. CONCLUSIONS: In the majority of samples, HoP did not cause any modification, thereby preserving the biological activity of HM proteins.


Subject(s)
Milk Proteins/analysis , Milk, Human/chemistry , Pasteurization/methods , Electrophoresis, Polyacrylamide Gel , Female , Humans , Mass Spectrometry
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