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1.
Sci Data ; 10(1): 205, 2023 04 13.
Article in English | MEDLINE | ID: mdl-37055424

ABSTRACT

Utilisation of dissolved organic phosphorus (DOP) by marine microbes as an alternative phosphorus (P) source when phosphate is scarce can help sustain non-Redfieldian carbon:nitrogen:phosphorus ratios and efficient ocean carbon export. However, global spatial patterns and rates of microbial DOP utilisation are poorly investigated. Alkaline phosphatase (AP) is an important enzyme group that facilitates the remineralisation of DOP to phosphate and thus its activity is a good proxy for DOP-utilisation, particularly in P-stressed regions. We present a Global Alkaline Phosphatase Activity Dataset (GAPAD) with 4083 measurements collected from 79 published manuscripts and one database. Measurements are organised into four groups based on substrate and further subdivided into seven size fractions based on filtration pore size. The dataset is globally distributed and covers major oceanic regions, with most measurements collected in the upper 20 m of low-latitude oceanic regions during summer since 1997. This dataset can help support future studies assessing global ocean P supply from DOP utilisation and provide a useful data reference for both field investigations and modelling activities.

2.
Sci Rep ; 12(1): 2687, 2022 02 17.
Article in English | MEDLINE | ID: mdl-35177689

ABSTRACT

The northern Adriatic is highly productive and shallow area characterized by numerous spatio-temporal gradients (e.g. nutrients, salinity, temperature). It is strongly influenced by numerous freshwater inputs, mainly from Po river. Its current systems as well as Po river, generates gradients of phosphate availability with an expressed N/P imbalance and phosphate limitation. A number of recent studies characterized these gradients as major factors affecting abundance and composition of microphytoplankton communities. Focus of this study is on two Leptocylindrus species, Leptocylindrus aporus (F.W. French & Hargraves) D. Nanjappa & A. Zingone 2013 and Leptocylindrus hargravesii D. Nanjappa & A. Zingone 2013. Species belonging to Leptocylindrus genus are frequently observed and have high abundances and also high contributions to the microphytoplankton community in this area. We focused on their morphological and physiological responses to phosphate limitation in situ and also performed in vitro experiments. In this study we report data on species specific growth rates under phosphorus (P) deplete and P rich conditions, localization and characteristics of alkaline phosphate activity, phosphate uptake rates as well as their morphological differences in P deplete versus P rich conditions. Our in vitro experiments showed that both Leptocylindrus species morphologically reacted similarly to phosphorus depletion and showed significantly elongated pervalvar axis in P depleted conditions if compared to P rich conditions. Also average chain lengths increased when in P depleted conditions. Two previously mentioned adaptations indicate their tendency to increase cellular surface areas available for alkaline phosphatase. Chlorophyll fluorescence of both species significantly decreased in P depleted medium. Although both species morphologically reacted similarly, our experiment demonstrated significant differences in physiological reactions to P depleted conditions.


Subject(s)
Adaptation, Physiological , Diatoms/growth & development , Phosphates/metabolism , Diatoms/classification , Oceans and Seas
3.
Limnol Oceanogr ; 65(11): 2730-2747, 2020 Nov.
Article in English | MEDLINE | ID: mdl-33664530

ABSTRACT

Dissolved free taurine, an important osmolyte in phytoplankton and metazoans, has been shown to be a significant carbon and energy source for prokaryotes in the North Atlantic throughout the water column. However, the extent of the coupling between taurine production and consumption over a seasonal cycle has not been examined yet. We determined taurine production by abundant crustacean zooplankton and its role as a carbon and energy source for several prokaryotic taxa in the northern Adriatic Sea over a seasonal cycle. Taurine concentrations were generally in the low nanomolar range, reaching a maximum of 22 nmol L-1 in fall during a Pseudonitzschia bloom and coinciding with the highest zooplankton taurine release rates. Taurine accounted for up to 5% of the carbon, 11% of the nitrogen, and up to 71% of the sulfur requirements of heterotrophic prokaryotes. Members of the Roseobacter clade, Alteromonas, Thaumarchaeota, and Euryarchaeota exhibited higher cell-specific taurine assimilation rates than SAR11 cells. However, cell-specific taurine and leucine assimilation were highly variable in all taxa, suggesting species and/or ecotype specific utilization patterns of taurine and dissolved free amino acids. Copepods were able to cover the bulk taurine requirements of the prokaryotic communities in fall and winter and partly in the spring-summer period. Overall, our study emphasizes the significance of taurine as a carbon and energy source for the prokaryotic community in the northern Adriatic Sea and the importance of crustacean zooplankton as a significant source of taurine and other organic compounds for the heterotrophic prokaryotic community.

4.
Environ Microbiol Rep ; 11(5): 699-707, 2019 10.
Article in English | MEDLINE | ID: mdl-31286686

ABSTRACT

The extent of DMSP demethylation has been hypothesized to depend on DMSP availability and bacterial sulfur demand, which might lead to niche differentiation of the demethylating bacterial community. In this study, we determined DMSP concentrations in marine snow and the ambient water over a seasonal cycle and linked DMSP concentrations to the abundance of bacteria harbouring the demethylation dmdA gene in the Adriatic Sea. In marine snow, DMSP concentrations were up to four times higher than in the ambient water and three times higher in marine snow in summer than in winter. The average dmdA:recA gene ratio over the sampling period was 0.40 ± 0.24 in marine snow and 0.48 ± 0.21 in the ambient water. However, at the subclade level, differences in the demethylating bacterial community of marine snow and the ambient water were apparent. Seasonal patterns of potentially demethylating bacteria were best visible at the oligotype level. In the ambient water, the SAR116 and the OM60/NOR5 clade were composed of oligotypes that correlated to high DMSP concentrations, while oligotypes of the Rhodospirillales correlated to low DMSP concentrations. Our results revealed a pronounced seasonal variability and spatial heterogeneity in DMSP concentrations and the associated demethylating bacterial community.


Subject(s)
Bacteria/classification , Demethylation , Geologic Sediments/microbiology , Microbial Consortia , Seasons , Seawater/microbiology , DNA, Bacterial/genetics , Gammaproteobacteria , Oceans and Seas , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
5.
Sci Total Environ ; 668: 171-183, 2019 Jun 10.
Article in English | MEDLINE | ID: mdl-30852195

ABSTRACT

Earth temperature is rising and oligotrophication is becoming apparent even in coastal seas. In this changing environment, phytoplankton use carbon and nutrients to form important biomolecules, including lipids. However, the link between lipid production and changing environment is still unexplored. Therefore, we investigated the phytoplankton lipid production in the diatom Chaetoceros pseudocurvisetus cultures under controlled temperatures ranging from 10 to 30 °C and nutrient regimes mimicking oligotrophic and eutrophic conditions. Results were compared to plankton community's lipid production in the northern Adriatic at two stations considered as oligotrophic and mesotrophic during an annual monthly sampling. In order to gain detailed information on the investigated system, we supplemented lipid data with chlorophyll a concentrations, phytoplankton taxonomy, cell abundances and nutrient concentration along with hydrographic parameters. We found enhanced particulate lipid production at higher temperatures, and substantially higher lipid production in oligotrophic conditions. Enhanced lipid production has two opposing roles in carbon sequestration; it can act as a retainer or a sinker. Lipid remodeling, including change in ratio of phospholipids and glycolipids, is more affected by the nutrient status, than the temperature increase. Triacylglycerol accumulation was observed under the nitrogen starvation.


Subject(s)
Environmental Monitoring , Global Warming , Lipid Metabolism/physiology , Phytoplankton/physiology , Chlorophyll A , Diatoms/physiology , Lipids , Seawater/chemistry
6.
FEMS Microbiol Ecol ; 94(12)2018 12 01.
Article in English | MEDLINE | ID: mdl-30299466

ABSTRACT

Seasonal changes of microbial abundance and associated extracellular enzymatic activity in marine snow and in seawater were studied in the northern Adriatic during a three-year period. Marine snow was present during the entire period of investigation, although in higher concentrations during summer than during winter. Microorganisms densely colonized marine snow and aggregate-associated enzymatic activity was substantially higher (up to 105 times) than in seawater. Alkaline phosphatase activity (APA) and aminopeptidase activity in marine snow showed seasonal variations with higher values in late spring-summer than in autumn-winter, probably in response to changes in the quantity and quality of organic matter. The highest cell-specific bacterial activity was found for phosphatase, followed by peptidase, and the lowest was for glucosidases. Differential hydrolysis of marine snow-derived organic matter points to the well-known phosphorus limitation of the northern Adriatic and indicates preferential utilization of phosphorus- and nitrogen-rich organic compounds by microbes, while hydrolysis of polysaccharides seemed to be less important. In oligotrophic conditions during summer, organic matter released from marine snow might represent a significant source of substrate for free-living bacteria in seawater. For the first time microorganisms producing APA in marine snow were identified, revealing that dense populations of bacteria expressed APA, while cyanobacteria did not. Cyanobacteria proliferating in marine snow could benefit from phosphorus release by bacteria and nanoflagellates.


Subject(s)
Bacteria/growth & development , Geologic Sediments/microbiology , Seawater/microbiology , Snow/microbiology , Alkaline Phosphatase/metabolism , Aminopeptidases/metabolism , Bacteria/classification , Glucosidases/metabolism , Microbiota , Phosphorus , Seasons
7.
PLoS One ; 13(9): e0203634, 2018.
Article in English | MEDLINE | ID: mdl-30208090

ABSTRACT

Chaetoceros peruvianus is a marine diatom species with circumglobal distribution. While frequently observed, it appears never to dominate the marine phytoplankton community hence it can be characterized as a rather opportunistic, generalistic species. Here we present ecological interpretations from a long-term data set on marine microphytoplankton in the northern Adriatic Sea, where the abundancies and relative contributions of C. peruvianus were observed along a set of steep ecological gradients. Limited supply of dissolved inorganic phosphate was identified as the driving ecological factor for this ecosystem. In parallel C. peruvianus was cultivated in monoclonal cultures and its morphological and physiological reaction to replete and phosphorus depleted medium was analysed. C. peruvianus reacted to phosphorus depletion by an increase in cell height and length as well as thickness and length of setae. This morphological reaction included an increase in cellular volume and calculated carbon content. Additionally, it represents the transition between two described morphological varieties, C. peruvianus and C. peruvianus var. robusta. C. peruvianus showed a significant induction of extracellular alkaline phosphatase activity if grown in phosphate depleted medium. Microscopical analysis demonstrated this activity to be located exclusively on the setae of the cells.


Subject(s)
Diatoms/growth & development , Phytoplankton/growth & development , Ecosystem , Marine Biology , Population Dynamics
8.
Mar Environ Res ; 131: 215-226, 2017 Oct.
Article in English | MEDLINE | ID: mdl-29032852

ABSTRACT

The response of bacteria in terms of abundance, production and community structure to changes induced by the discharge of primary treated sewage waters was investigated combining microbiological, chemical and molecular tools. The primary treatment did not affect substantially the bacterial community structure in wastewaters and did not reduce the concentrations of fecal indicators. The spatial distribution of the sewage plume was governed by vertical stratification and currents. Bacterial abundance and production in the sea receiving waste waters depended predominantly on environmental conditions. In the waters with the highest concentration of fecal pollution indicators the bacterial community was characterized by allochthonous bacteria belonging to Epsilonproteobacteria, Firmicutes, Gammaproteobacteria and Bacteroidetes. The latter two taxa were also present in unpolluted waters but had a different structure, typical for oligotrophic environments. Although the impact of primary treated sewage waters was limited, a sanitary risk persisted due to the relevant presence of potentially pathogenic bacteria.


Subject(s)
Bacteria/growth & development , Environmental Monitoring/methods , Seawater/microbiology , Wastewater/analysis , Water Microbiology , Bacteria/classification , Wastewater/microbiology
9.
Mar Environ Res ; 92: 120-32, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24094892

ABSTRACT

A systematic investigation of non-phosphorus containing glycolipids (GL) was conducted in the northern Adriatic Sea during two years at two stations with different nutrient loads. GL concentration varied both spatially and temporally, with values of 1.1-21.5 µg/L and 0.4-44.7 µg/L in the particulate and the dissolved fraction, respectively. The highest concentrations were measured during summer in surface waters and at the more oligotrophic station, where GL yields (% of total lipids) were often higher than 20% and 50% in the particulate and dissolved fractions, respectively. To obtain more insight into factors governing GL accumulation autotrophic plankton community structure (pico-, nano- and microplankton fractions), chlorophyll a, heterotrophic bacteria and nutrient concentrations were measured together with hydrographic parameters and sunlight intensity. During the investigated period smaller autotrophic plankton cells (pico- and followed by nanoplankton) prevailed in abundance over larger cells (microplankton), which were found in large numbers in freshened surface samples. Several major findings resulted from the study. Firstly, during PO4 limitation, particularly at the oligotrophic station, enhanced glycolipid instead of phospholipid accumulation takes place, representing an effective phosphate-conserving mechanism. Secondly, results suggest that at seawater temperatures >19 °C autotrophic plankton considerably accumulate GL, probably to achieve thermal stability. Thirdly, high sunlight intensities seem to influence increased GL accumulation; GL possibly plays a role in cell mechanisms that prevent/mitigate photooxidation. And finally, substantial accumulation of GL detected in the dissolved fraction could be related to the fact that GL do not contain biologically relevant elements, like phosphorus, which makes them an unattractive substrate for enzyme activity. Therefore, substantial portion of CO2 could be removed from the atmosphere in P-limited regions during summer via its capture by plankton and conversion to GL.


Subject(s)
Adaptation, Physiological , Glycolipids/metabolism , Plankton/physiology , Bacteria , Chlorophyll/metabolism , Chlorophyll A , Phosphates/metabolism , Seasons , Seawater , Stress, Physiological , Sunlight , Temperature
10.
Mar Environ Res ; 69(2): 85-94, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19766303

ABSTRACT

The importance of bacterial, phytoplankton and dissolved alkaline phosphatase activity (APA) in the northern Adriatic was investigated during 2006. In surface waters total APA increased from early spring (0.07-0.08 micromol l(-1) h(-1)) to late spring (up to 4.64 micromol l(-1) h(-1)) and remained relatively high during the summer (0.46-0.71 micromol l(-1) h(-1)), due to an increase in specific phytoplankton (up to 30 nmol microg C(-1) h(-1)) and bacterial APA (up to 17.11 nmol microg C(-1) h(-1)). Activity of free enzymes was not important. During late spring and summer both communities exploited dissolved organic phosphorus although, taking into account biomass, phytoplankton activity usually dominated over bacterial activity. In autumn an extra P supply from deeper waters drastically reduced phytoplankton APA, though not bacterial APA, in upper waters. Probably in these months bacteria that were degrading phytoplankton produced organic matter were P limited. In deeper waters APA was low and mainly due to the activity of free enzymes.


Subject(s)
Alkaline Phosphatase/metabolism , Bacteria/enzymology , Bacterial Proteins/metabolism , Phytoplankton/physiology , Seawater/analysis , Bacteria/growth & development , Biomass , Ecosystem , Oceans and Seas , Phytoplankton/enzymology , Phytoplankton/microbiology , Seasons
11.
FEMS Microbiol Ecol ; 58(3): 333-42, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17117978

ABSTRACT

The influence of inorganic nutrient concentrations on the ability of bacterioplankton to produce and degrade polysaccharidic transparent exopolymer particles (TEPs) and proteinaceous Coomassie-stained particles (CSPs) was investigated in an 11-day experiment. The dynamics of these particles were followed in prefiltered (1 microm) northern Adriatic seawater enclosures enriched either with 1 microM orthophosphate (main limiting nutrient in this area), 10 microM ammonium or both orthophosphate and ammonium. These enclosures were referenced to a nonenriched control. A high potential for bacterial TEP and CSP production was observed (10(4) - 10(5) L(-1) for particles larger than 4 microm). In conditions of high orthophosphate concentration (either orthophosphate enriched or both orthophosphate and ammonium enriched), lower abundances and surface areas of CSPs were obtained, whereas TEP dynamics were more affected by unbalanced enrichments where only orthophosphate or ammonium was added. The impact of unbalanced nutrient ratios on TEPs was indicated by their higher abundance but low capacity for Alcian blue absorption, implying a change in their structure. Inorganic nutrient availability was thus proven to affect the bacterial potential for producing and degrading bacterially derived TEPs and CSPs.


Subject(s)
Bacteria/metabolism , Phosphates/pharmacology , Plankton/metabolism , Polysaccharides/biosynthesis , Proteins/metabolism , Quaternary Ammonium Compounds/pharmacology , Bacteria/drug effects , Marine Biology , Mediterranean Sea , Plankton/drug effects , Polysaccharides/analysis , Proteins/analysis , Seawater/analysis , Seawater/chemistry , Seawater/microbiology
12.
Sci Total Environ ; 353(1-3): 103-14, 2005 Dec 15.
Article in English | MEDLINE | ID: mdl-16303169

ABSTRACT

Nutrient and chlorophyll a concentrations and salinity were measured, approximately monthly, from June 1999 to July 2002 at 20 stations along three transects in the northern Adriatic Sea, north of the line Susak Island-Senigallia, with the aim of confirming or rejecting the hypothesis that changes in nutrient ratios may have an important role in the mucilage phenomenon. The data analyses were focused on the two major water types identified in the region: lower salinity (32-37) and oxygenated surface waters (type 1) in which the mucilage phenomenon primarily developed, and high salinity water originating from other parts of the Adriatic (type 4). Marked variability of dissolved inorganic nitrogen (DIN) in type 1 waters was roughly correlated with extreme fluctuations of the Po River flow rate during the investigated period. In contrast, the orthophosphate (PO4) concentration was primarily controlled by phytoplankton assimilation. The nutrient discharges and DIN/PO4 ratios (median 120) in the freshened surface layer were much higher and more variable in the period before the mucilage event in 2001 than in 2000 (median 75), and particularly in 2002 (median 30), although intensity and duration of the 2001 event were the lowest. However, in that period of 2000 and 2002 significant transversal transport of freshened waters occurred, despite the unusually low Po flow rates. In summer, in conditions of low freshwater discharge and the prevailing of semi-enclosed circulation in the region, more efficient DIN assimilation by phytoplankton occurred, probably due to a faster recycling of PO4. However, in 2002 this process appeared to have already started in March. Changes of the orthosilicate (SiO4)/DIN ratio were mainly dependent on DIN concentrations. In the more saline waters (type 4) the nutrient concentrations, particularly DIN, were much lower and no significant relationships were noticed among the studied parameters. Nutrient concentration and ratio changes do not trigger mucilage events, although very probably they have an essential role in combination with several other physical (pulsing freshwater discharge, marked stratification, minimal water exchange) and biological (e.g., increased plankton excretion, limited bacterial degradation) factors.


Subject(s)
Eukaryota/growth & development , Oceanography/statistics & numerical data , Phytoplankton/growth & development , Seawater/analysis , Water Movements , Chlorophyll/analysis , Chlorophyll A , Mediterranean Sea , Nitrogen/analysis , Oxygen/analysis , Phosphates/analysis , Population Dynamics , Silicates/analysis , Sodium Chloride/analysis
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