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1.
Sci Data ; 4: 170016, 2017 02 14.
Article in English | MEDLINE | ID: mdl-28195585

ABSTRACT

We provide a quantitative description of the French national herbarium vascular plants collection dataset. Held at the Muséum national d'histoire naturelle, Paris, it currently comprises records for 5,400,000 specimens, representing 90% of the estimated total of specimens. Ninety nine percent of the specimen entries are linked to one or more images and 16% have field-collecting information available. This major botanical collection represents the results of over three centuries of exploration and study. The sources of the collection are global, with a strong representation for France, including overseas territories, and former French colonies. The compilation of this dataset was made possible through numerous national and international projects, the most important of which was linked to the renovation of the herbarium building. The vascular plant collection is actively expanding today, hence the continuous growth exhibited by the dataset, which can be fully accessed through the GBIF portal or the MNHN database portal (available at: https://science.mnhn.fr/institution/mnhn/collection/p/item/search/form). This dataset is a major source of data for systematics, global plants macroecological studies or conservation assessments.


Subject(s)
Plants , France , Museums
2.
Sci Rep ; 3: 3518, 2013 Dec 17.
Article in English | MEDLINE | ID: mdl-24343362

ABSTRACT

Herbal dietary supplements made from saw palmetto (Serenoa repens; Arecaceae) fruit are commonly consumed to ameliorate benign prostate hyperplasia. A novel DNA mini-barcode assay to accurately identify [specificity = 1.00 (95% confidence interval = 0.74-1.00); sensitivity = 1.00 (95% confidence interval = 0.66-1.00); n = 31] saw palmetto dietary supplements was designed from a DNA barcode reference library created for this purpose. The mini-barcodes were used to estimate the frequency of mislabeled saw palmetto herbal dietary supplements on the market in the United States of America. Of the 37 supplements examined, amplifiable DNA could be extracted from 34 (92%). Mini-barcode analysis of these supplements demonstrated that 29 (85%) contain saw palmetto and that 2 (6%) supplements contain related species that cannot be legally sold as herbal dietary supplements in the United States of America. The identity of 3 (9%) supplements could not be conclusively determined.


Subject(s)
DNA Barcoding, Taxonomic , Dietary Supplements , Plant Extracts , Serenoa/classification , Serenoa/genetics , DNA, Plant , Dietary Supplements/standards , Fruit/genetics , Genetic Markers , Genetic Variation , Plant Extracts/standards
3.
Ann Bot ; 108(8): 1445-51, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21757475

ABSTRACT

BACKGROUND AND AIMS: In the last decade, a new tool - DNA barcoding - was proposed to identify species. The technique of DNA barcoding is still being developed. The Consortium for the Barcode of Life's Plant Working Group (CBOL-PWG) selected two core markers (matK and rbcL) that now must be tested in as many taxa as possible. Although the taxonomy of palms (Arecaceae/Palmae) has been greatly improved in the past decades, taxonomic problems remain. Species complexes, for example, could significantly benefit from DNA barcoding. Palms have never before been subjected to a DNA barcoding test. METHODS: For this study, 40 out of the 48 species of the southeast Asian tribe Caryoteae (subfamily Coryphoideae) were included. In total, four DNA markers - three plastid encoded (matK, rbcL and psbA-trnH) and one nuclear encoded (nrITS2) - were analysed to determine if adequate variation exists to discriminate among species. KEY RESULTS: The combination of three markers - matK, rbcL and nrITS2 - results in 92 % species discrimination. This rate is high for a barcoding experiment. The two core markers suggested by the CBOL-PWG, rbcL and matK, have a low species discrimination rate and need to be supplemented by another marker. In Caryoteae, nrITS2 should be chosen over psbA-trnH to supplement the two 'core' markers. CONCLUSIONS: For the first time a test of DNA barcoding was conducted in Arecaceae. Considering that palms have highly variable mutation rates compared with other angiosperms, the results presented here are encouraging for developing DNA barcoding as a useful tool to identify species within this ecologically important tropical plant family.


Subject(s)
Arecaceae/classification , Arecaceae/genetics , DNA Barcoding, Taxonomic , Asia, Southeastern , Base Sequence , DNA, Plant/genetics , Genetic Markers/genetics , Molecular Sequence Data , Phylogeny
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