Registered Reports: A new chapter at Ecology & Evolution.

Ecology & Evolution has published its first Registered Report and offers the perspective of the editor, author, and student on the publication process.

Reproducibility in ecology and evolution: Minimum standards for data and code.

We call for journals to commit to requiring open data be archived in a format that will be simple and clear for readers to understand and use. If applied consistently, these requirements will allow contributors to be acknowledged for their work through citation of open data, and facilitate scientific progress.

FORUM: Ecological networks: the missing links in biomonitoring science.

Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems.Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses.Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network-based perspective.

Long-term amelioration of acidity accelerates decomposition in headwater streams.

The secondary production of culturally acidified streams is low, with a few species of generalist detritivores dominating invertebrate assemblages, while decomposition processes are impaired. In a series of lowland headwater streams in southern England, we measured the rate of cellulolytic decomposition and compared it with values measured three decades ago, when anthropogenic acidification was at its peak. We hypothesized that, if acidity has indeed ameliorated, the rate of decomposition will have accelerated, thus potentially supporting greater secondary production and the longer food chains that have been observed in some well-studied recovering freshwater systems. We used cellulose Shirley test cloth as a standardized bioassay to measure the rate of cellulolytic decomposition, via loss in tensile strength, for 31 streams in the Ashdown Forest over 7 days in summer 2011 and 49 days in winter 2012. We compared this with data from an otherwise identical study conducted in 1978 and 1979. In a secondary study, we determined whether decomposition followed a linear or logarithmic decay and, as Shirley cloth is no longer available, we tested an alternative in the form of readily available calico. Overall mean pH had increased markedly over the 32 years between the studies (from 6.0 to 6.7). In both the previous and contemporary studies, the relationship between decomposition and pH was strongest in winter, when pH reaches a seasonal minimum. As in the late 1970s, there was no relationship in 2011/2012 between pH and decay rate in summer. As postulated, decomposition in winter was significantly faster in 2011/2012 than in 1978/1979, with an average increase in decay rate of 18.1%. Recovery from acidification, due to decreased acidifying emissions and deposition, has led to an increase in the rate of cellulolytic decomposition. This response in a critical ecosystem process offers a potential explanation of one aspect of the limited biological recovery that has been observed so far, an increase in larger bodied predators including fish, which in turn leads to an increase in the length of food chains.

A long-term association between global temperature and biodiversity, origination and extinction in the fossil record.

The past relationship between global temperature and levels of biological diversity is of increasing concern due to anthropogenic climate warming. However, no consistent link between these variables has yet been demonstrated. We analysed the fossil record for the last 520 Myr against estimates of low latitude sea surface temperature for the same period. We found that global biodiversity (the richness of families and genera) is related to temperature and has been relatively low during warm 'greenhouse' phases, while during the same phases extinction and origination rates of taxonomic lineages have been relatively high. These findings are consistent for terrestrial and marine environments and are robust to a number of alternative assumptions and potential biases. Our results provide the first clear evidence that global climate may explain substantial variation in the fossil record in a simple and consistent manner. Our findings may have implications for extinction and biodiversity change under future climate warming.