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1.
Science ; 352(6283): aaf1015, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-27081075

ABSTRACT

The nuclear pore complex (NPC) controls the transport of macromolecules between the nucleus and cytoplasm, but its molecular architecture has thus far remained poorly defined. We biochemically reconstituted NPC core protomers and elucidated the underlying protein-protein interaction network. Flexible linker sequences, rather than interactions between the structured core scaffold nucleoporins, mediate the assembly of the inner ring complex and its attachment to the NPC coat. X-ray crystallographic analysis of these scaffold nucleoporins revealed the molecular details of their interactions with the flexible linker sequences and enabled construction of full-length atomic structures. By docking these structures into the cryoelectron tomographic reconstruction of the intact human NPC and validating their placement with our nucleoporin interactome, we built a composite structure of the NPC symmetric core that contains ~320,000 residues and accounts for ~56 megadaltons of the NPC's structured mass. Our approach provides a paradigm for the structure determination of similarly complex macromolecular assemblies.


Subject(s)
Nuclear Pore Complex Proteins/metabolism , Nuclear Pore/metabolism , Nuclear Pore/ultrastructure , Protein Interaction Maps , Active Transport, Cell Nucleus , Amino Acid Sequence , Cryoelectron Microscopy , Crystallography, X-Ray , Cytoplasm/metabolism , Electron Microscope Tomography , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Humans , Molecular Sequence Data , Nuclear Pore/chemistry , Nuclear Pore Complex Proteins/chemistry , Nuclear Pore Complex Proteins/genetics , Protein Structure, Tertiary , Protein Subunits/chemistry , Protein Subunits/genetics , Protein Subunits/metabolism
2.
Science ; 350(6256): 56-64, 2015 Oct 02.
Article in English | MEDLINE | ID: mdl-26316600

ABSTRACT

The nuclear pore complex (NPC) constitutes the sole gateway for bidirectional nucleocytoplasmic transport. We present the reconstitution and interdisciplinary analyses of the ~425-kilodalton inner ring complex (IRC), which forms the central transport channel and diffusion barrier of the NPC, revealing its interaction network and equimolar stoichiometry. The Nsp1•Nup49•Nup57 channel nucleoporin heterotrimer (CNT) attaches to the IRC solely through the adaptor nucleoporin Nic96. The CNT•Nic96 structure reveals that Nic96 functions as an assembly sensor that recognizes the three-dimensional architecture of the CNT, thereby mediating the incorporation of a defined CNT state into the NPC. We propose that the IRC adopts a relatively rigid scaffold that recruits the CNT to primarily form the diffusion barrier of the NPC, rather than enabling channel dilation.


Subject(s)
Chaetomium/ultrastructure , Fungal Proteins/ultrastructure , Nuclear Pore Complex Proteins/ultrastructure , Nuclear Pore/ultrastructure , Nuclear Proteins/ultrastructure , Amino Acid Sequence , Chaetomium/metabolism , Fungal Proteins/chemistry , Molecular Sequence Data , Nuclear Pore/metabolism , Nuclear Pore Complex Proteins/chemistry , Nuclear Proteins/chemistry , Protein Binding , Protein Multimerization , Protein Structure, Secondary , Protein Structure, Tertiary
3.
Circ Heart Fail ; 4(1): 89-97, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21036890

ABSTRACT

BACKGROUND: The BIO14.6 hamster provides a useful model of hereditary cardiomyopathies and muscular dystrophy. Previous δ-sarcoglycan (δSG) gene therapy (GT) studies were limited to neonatal and young adult animals and prevented the development of cardiac and skeletal muscle dysfunction. GT of a pseudophosphorylated mutant of phospholamban (S16EPLN) moderately alleviated the progression of cardiomyopathy. METHODS AND RESULTS: We treated 4-month-old BIO14.6 hamsters with established cardiac and skeletal muscle diseases intravenously with a serotype-9 adeno-associated viral vector carrying δSG alone or in combination with S16EPLN. Before treatment at age 14 weeks, the left ventricular fractional shortening by echocardiography was 31.3% versus 45.8% in normal hamsters. In a randomized trial, GT halted progression of left ventricular dilation and left ventricular dysfunction. Also, respiratory function improved. Addition of S16EPLN had no significant additional effects. δSG-GT prevented severe degeneration of the transverse tubular system in cardiomyocytes (electron tomography) and restored distribution of dystrophin and caveolin-3. All placebo-treated hamsters, except animals removed for the hemodynamic study, died with heart failure between 34 and 67 weeks of age. In the GT group, signs of cardiac and respiratory failure did not develop, and animals lived for 92 weeks or longer, an age comparable to that reported in normal hamsters. CONCLUSION: GT was highly effective in BIO14.6 hamsters even when given in late-stage disease, a finding that may carry implications for the future treatment of hereditary cardiac and muscle diseases in humans.


Subject(s)
Cardiovascular Agents/therapeutic use , Genetic Therapy , Heart Failure/prevention & control , Muscular Diseases/prevention & control , Respiratory Insufficiency/prevention & control , Sarcoglycans/therapeutic use , Adenoviridae/genetics , Animals , Cricetinae , Disease Models, Animal , Disease Progression , Heart Failure/genetics , Longevity/genetics , Male , Mesocricetus , Muscular Diseases/genetics , Muscular Diseases/pathology , Myocardium/pathology , Respiratory Insufficiency/genetics , Respiratory Muscles/pathology , Sarcoglycans/genetics
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