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1.
Big Data ; 7(2): 130-138, 2019 06.
Article in English | MEDLINE | ID: mdl-31194587

ABSTRACT

To improve the accuracy of midterm power load forecasting, a forecasting model is proposed by combing kernel principal component analysis (KPCA) with back propagation neural network. First, the dimension of the input space is reduced by KPCA, then input the data set to the neural network model, optimized by particle swarm optimization. The monthly average of daily peak loads is forecasted to modify the daily forecast values and output the daily peak load in the end. Using the data provided by European Network on Intelligent Technologies to test the model, the mean absolute percent error of load forecasting model is only 1.39%. The feasibility and validity of the model have been proven.


Subject(s)
Neural Networks, Computer , Principal Component Analysis , Forecasting , Support Vector Machine
2.
Plant Cell ; 22(4): 1232-48, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20363773

ABSTRACT

Cytokinin signaling is mediated by a multiple-step phosphorelay. Key components of the phosphorelay consist of the histidine kinase (HK)-type receptors, histidine phosphotransfer proteins (HP), and response regulators (RRs). Whereas overexpression of a nonreceptor-type HK gene CYTOKININ-INDEPENDENT1 (CKI1) activates cytokinin signaling by an unknown mechanism, mutations in CKI1 cause female gametophytic lethality. However, the function of CKI1 in cytokinin signaling remains unclear. Here, we characterize a mutant allele, cki1-8, that can be transmitted through female gametophytes with low frequency (approximately 0.17%). We have recovered viable homozygous cki1-8 mutant plants that grow larger than wild-type plants, show defective megagametogenesis and rarely set enlarged seeds. We found that CKI1 acts upstream of AHP (Arabidopsis HP) genes, independently of cytokinin receptor genes. Consistently, an ahp1,2-2,3,4,5 quintuple mutant, which contains an ahp2-2 null mutant allele, exhibits severe defects in megagametogenesis, with a transmission efficiency of <3.45% through female gametophytes. Rarely recovered ahp1,2-2,3,4,5 quintuple mutants are seedling lethal. Finally, the female gametophytic lethal phenotype of cki1-5 (a null mutant) can be partially rescued by IPT8 or ARR1 (a type-B Arabidopsis RR) driven by a CKI1 promoter. These results define a genetic pathway consisting of CKI1, AHPs, and type-B ARRs in the regulation of female gametophyte development and vegetative growth.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/growth & development , Cytokinins/metabolism , Ovule/embryology , Protein Kinases/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , DNA, Bacterial/genetics , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Mutagenesis, Insertional , Mutation , Phenotype , Protein Kinases/genetics , RNA, Plant/genetics
3.
Plant Physiol ; 140(4): 1345-54, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16489134

ABSTRACT

Iron is an essential element for almost all living organisms, actively involved in a variety of cellular activities. To acquire iron from soil, strategy I plants such as Arabidopsis (Arabidopsis thaliana) must first reduce ferric to ferrous iron by Fe(III)-chelate reductases (FROs). FRO genes display distinctive expression patterns in several plant species. However, regulation of FRO genes is not well understood. Here, we report a systematic characterization of the AtFRO6 expression during plant growth and development. AtFRO6, encoding a putative FRO, is specifically expressed in green-aerial tissues in a light-dependent manner. Analysis of mutant promoter-beta-glucuronidase reporter genes in transgenic Arabidopsis plants revealed the presence of multiple light-responsive elements in the AtFRO6 promoter. These light-responsive elements may act synergistically to confer light responsiveness to the AtFRO6 promoter. Moreover, no AtFRO6 expression was detected in dedifferentiated green calli of the korrigan1-2 (kor1-2) mutant or undifferentiated calli derived from wild-type explants. Conversely, AtFRO6 is expressed in redifferentiated kor1-2 shoot-like structures and differentiating calli of wild-type explants. In addition, AtFRO7, but not AtFRO5 and AtFRO8, also shows a reduced expression level in kor1-2 green calli. These results suggest that whereas photosynthesis is necessary but not sufficient, both light and cell differentiation are necessary for AtFRO6 expression. We propose that AtFRO6 expression is light regulated in a tissue- or cell differentiation-specific manner to facilitate the acquisition of iron in response to distinctive developmental cues.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis/genetics , FMN Reductase/genetics , Gene Expression Regulation, Plant , Light , Arabidopsis/enzymology , Arabidopsis/growth & development , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Base Sequence , Cell Differentiation , FMN Reductase/chemistry , FMN Reductase/metabolism , Genes, Reporter , Molecular Sequence Data , Mutagenesis, Site-Directed , Mutation , Photosynthesis , Promoter Regions, Genetic , Protein Structure, Tertiary
4.
Mol Genet Genomics ; 275(4): 374-86, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16435118

ABSTRACT

The cyclins together with highly conserved cyclin-dependent kinases regulate cell cycle progression in plants. Although extensive and systematic study on cell cycle mechanisms and cyclin functions in yeasts and animals has been carried out, only a small number of plant cyclins have been characterized and classified functionally and phylogenetically. We identified several types of cyclin genes in the rice genome and characterized them by phylogenetic, tandem and segmental duplications analyses. Our results indicated that there were at least 49 predicted rice cyclin genes in the rice genome, and they were distributed on 12 chromosomes. Of these cyclins, one possessed only cyclin_C domain and no cyclin_N domain, and the remaining 48 cyclins with cyclin_N domains were classified as nine types based on evolutionary relationships. Eight of these nine types were common between rice and Arabidopsis, whereas only one, known as F-type cyclins, was unique to rice. No homologues of the F-type cyclins in plants could be retrieved from the public databases, and reverse transcription-PCR analysis supported an existence of the F-type cyclin genes. Sequence alignment suggested that the cyclin genes in the rice genome experienced a mass of gene tandem and segmental duplications occurred on seven chromosomes related to the origins of new cyclin genes. Our study provided an opportunity to facilitate assessment and classification of new members, serving as a guide for further functional elucidation of rice cyclins.


Subject(s)
Cyclins/genetics , Oryza/genetics , Phylogeny , Arabidopsis Proteins/genetics , Chromosome Mapping , Chromosomes, Artificial, Bacterial , Cyclins/classification , Gene Duplication , Gene Expression Regulation, Plant , Genome, Plant , Multigene Family , Protein Structure, Tertiary , Reverse Transcriptase Polymerase Chain Reaction
5.
Yi Chuan Xue Bao ; 32(10): 1082-8, 2005 Oct.
Article in Chinese | MEDLINE | ID: mdl-16252704

ABSTRACT

Using an estrogen-inducible expression XVE (LexA-VP16-Estragon Receptor) system, we have generated approximately 40 000 independent T-DNA insertion lines of Arabidopsis thaliana. Segregation analyses of about 18000 lines indicated that 51.6% of them contain single T-DNA insertions and that the average insertion number is 1.38 copies per line. Mutants displaying a variety of morphological alterations were identified, including those that affect development of roots,hypocotyls, leaves, floral organs and seeds as well as the flowering time.


Subject(s)
Arabidopsis/genetics , DNA, Bacterial/genetics , Mutagenesis, Insertional/methods , Plants, Genetically Modified/genetics , Arabidopsis/anatomy & histology , Arabidopsis/growth & development , Bacterial Proteins/genetics , Cloning, Molecular , Estrogens/pharmacology , Genetic Vectors/genetics , Herpes Simplex Virus Protein Vmw65/genetics , Mutagenesis, Insertional/drug effects , Phenotype , Plants, Genetically Modified/anatomy & histology , Plants, Genetically Modified/growth & development , Plasmids/genetics , Receptors, Estrogen/genetics , Serine Endopeptidases/genetics , Transcriptional Activation/drug effects
6.
PLoS Biol ; 3(2): e38, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15685292

ABSTRACT

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the genes are aligned, without fragmentation, to the mapped super-scaffolds of one or the other genome. We introduce a gene identification procedure for plants that does not rely on similarity to known genes to remove erroneous predictions resulting from transposable elements. Using the available EST data to adjust for residual errors in the predictions, the estimated gene count is at least 38,000-40,000. Only 2%-3% of the genes are unique to any one subspecies, comparable to the amount of sequence that might still be missing. Despite this lack of variation in gene content, there is enormous variation in the intergenic regions. At least a quarter of the two sequences could not be aligned, and where they could be aligned, single nucleotide polymorphism (SNP) rates varied from as little as 3.0 SNP/kb in the coding regions to 27.6 SNP/kb in the transposable elements. A more inclusive new approach for analyzing duplication history is introduced here. It reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications. We find 18 distinct pairs of duplicated segments that cover 65.7% of the genome; 17 of these pairs date back to a common time before the divergence of the grasses. More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family.


Subject(s)
Gene Duplication , Genome, Plant , Oryza/genetics , Base Sequence , China , Chromosome Mapping , Genes, Plant
7.
Chin Med J (Engl) ; 115(2): 235-7, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11940339

ABSTRACT

OBJECTIVE: To study the factors affecting the long-term prognosis of patients with myasthenia gravis (MG) after thymectomy. METHODS: 170 MG patients who had undergone thymectomies were studied retrospectively. Among them, 124 patients received long-term follow-up for more than 40 months postoperatively. The COX regression analysis model was used to analyze the factors that may influence the long-term prognosis. These factors included thymus pathology, patient gender, age, duration of disease at the time of surgery, preoperative Osserman classification and medication. RESULTS: The research showed that thymus pathology was the single independent factor that affected the postoperative long-term prognosis. The long-term survival rates differed significantly with thymus pathological types: hyperplasia > benign thymoma > atrophy > malignant thymoma (P < 0.05). CONCLUSION: The different pathological types of the thymus were the important factor affecting long-term survival in MG patients after thymectomy.


Subject(s)
Myasthenia Gravis/surgery , Thymectomy/adverse effects , Adolescent , Adult , Aged , Atrophy/etiology , Child , Child, Preschool , Female , Humans , Hyperplasia/etiology , Male , Middle Aged , Myasthenia Gravis/mortality , Postoperative Complications , Prognosis , Survival Analysis , Survival Rate , Thymoma/etiology , Thymus Gland/pathology , Thymus Gland/surgery , Time Factors
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