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1.
BMC Plant Biol ; 24(1): 698, 2024 Jul 24.
Article in English | MEDLINE | ID: mdl-39044176

ABSTRACT

Cold stress can impact plant biology at both the molecular and morphological levels. We cultivated two different types of tobacco seedlings using distinct seeding methods, observing significant differences in their cold tolerance at 4 °C. After 12 h cold stress, shallow water seeding cultivation treatment demonstrates a relatively good growth state with slight wilting of the leaves. Tobacco grown using the float system exhibited short, thick roots, while those cultivated through shallow water seeding had elongated roots with more tips and forks. After cold stress, the shallow water seeding cultivation treatment demonstrated higher antioxidant enzyme activity, and lower malondialdehyde (MDA) content.Transcriptome analysis was performed on the leaves of these tobacco seedlings at three stages of cold treatment (before cold stress, after cold stress, and after 3 days of recovery). Upon analyzing the raw data, we found that the shallow water seeding cultivation treatment was associated with significant functional enrichment of nicotinamide adenine dinucleotide (NAD) biosynthesis and NAD metabolism before cold stress, enrichment of functions related to the maintenance of cellular structure after cold stress, and substantial functional enrichment related to photosynthesis during the recovery period. Weighted gene co-expression network analysis (WGCNA) was conducted, identifying several hub genes that may contribute to the differences in cold tolerance between the two tobacco seedlings. Hub genes related to energy conversion were predominantly identified in shallow water seeding cultivation treatment during our analysis, surpassing findings in other areas. These include the AS gene, which controls the synthesis of NAD precursors, the PED1 gene, closely associated with fatty acid ß-oxidation, and the RROP1 gene, related to ATP production.Overall, our study provides a valuable theoretical basis for exploring improved methods of cultivating tobacco seedlings. Through transcriptome sequencing technology, we have elucidated the differences in gene expression in different tobacco seedlings at three time points, identifying key genes affecting cold tolerance in tobacco and providing possibilities for future gene editing.


Subject(s)
Nicotiana , Seedlings , Water , Nicotiana/genetics , Nicotiana/physiology , Nicotiana/growth & development , Seedlings/genetics , Seedlings/growth & development , Seedlings/physiology , Water/metabolism , Cold-Shock Response/genetics , Cold-Shock Response/physiology , Gene Expression Profiling , Gene Expression Regulation, Plant , Cold Temperature
2.
PLoS One ; 18(5): e0286138, 2023.
Article in English | MEDLINE | ID: mdl-37253032

ABSTRACT

Magnetic reconnection is a process that can rapidly convert magnetic field energy into plasma thermal energy and kinetic energy, and it is also an important energy conversion mechanism in space physics, astrophysics and plasma physics. Research related to analytical solutions for time-dependent three-dimensional magnetic reconnection is extremely difficult. For decades, several mathematical descriptions have been developed regarding different reconnection mechanisms, in which the equations based on magnetohydrodynamics theory outside the reconnection diffusion region are widely accepted. However, the equation set cannot be analytically solved unless specified constraints are imposed or the equations are reduced. Based on previous analytical methods for kinematic stationary reconnection, here the analytical solutions for time-dependent kinematic three-dimensional magnetic reconnection are discussed. In contrast to the counter-rotating plasma flows that existed in steady-state reconnection, it is found that spiral plasma flows, which have never been reported before, can be generated if the magnetic field changes exponentially with time. These analyses reveal new scenarios for time-dependent kinematic three-dimensional magnetic reconnection, and the deduced analytical solutions could improve our understanding of the dynamics involved in reconnection processes, as well as the interactions between the magnetic field and plasma flows during magnetic reconnection.


Subject(s)
Magnetic Fields , Physics , Biomechanical Phenomena , Physical Phenomena , Diffusion
3.
Innovation (Camb) ; 3(3): 100236, 2022 May 10.
Article in English | MEDLINE | ID: mdl-35479733

ABSTRACT

Magnetic fields play a fundamental role in the structure and dynamics of the solar corona. As they are driven by their footpoint motions on the solar surface, which transport energy from the interior of the Sun into its atmosphere, the coronal magnetic fields are stressed continuously with buildup of magnetic nonpotentiality in the form of topology complexity (magnetic helicity) and local electric currents (magnetic free energy). The accumulated nonpotentiality is often released explosively by solar eruptions, manifested as solar flares and coronal mass ejections, during which magnetic energy is converted into mainly kinetic, thermal, and nonthermal energy of the plasma, which can cause adverse space weather. To reveal the physical mechanisms underlying solar eruptions, it is vital to know the three-dimensional (3D) structure and evolution of the coronal magnetic fields. Because of a lack of direct measurements, the 3D coronal magnetic fields are commonly studied using numerical modeling, whereas traditional models mostly aim for a static extrapolation of the coronal field from the observable photospheric magnetic field data. Over the last decade, dynamic models that are driven directly by observation magnetograms have been developed and applied successfully to study solar coronal magnetic field evolution as well as its eruption, which offers a novel avenue for understanding their underlying magnetic topology and mechanism. In this paper, we review the basic methodology of the data-driven coronal models, state-of-the-art developments, their typical applications, and new physics that have been derived using these models. Finally, we provide an outlook for future developments and applications of the data-driven models.

4.
Nat Commun ; 13(1): 640, 2022 Feb 02.
Article in English | MEDLINE | ID: mdl-35110575

ABSTRACT

Magnetic reconnection is a multi-faceted process of energy conversion in astrophysical, space and laboratory plasmas that operates at microscopic scales but has macroscopic drivers and consequences. Solar flares present a key laboratory for its study, leaving imprints of the microscopic physics in radiation spectra and allowing the macroscopic evolution to be imaged, yet a full observational characterization remains elusive. Here we combine high resolution imaging and spectral observations of a confined solar flare at multiple wavelengths with data-constrained magnetohydrodynamic modeling to study the dynamics of the flare plasma from the current sheet to the plasmoid scale. The analysis suggests that the flare resulted from the interaction of a twisted magnetic flux rope surrounding a filament with nearby magnetic loops whose feet are anchored in chromospheric fibrils. Bright cusp-shaped structures represent the region around a reconnecting separator or quasi-separator (hyperbolic flux tube). The fast reconnection, which is relevant for other astrophysical environments, revealed plasmoids in the current sheet and separatrices and associated unresolved turbulent motions.

5.
Nat Commun ; 8(1): 1330, 2017 11 06.
Article in English | MEDLINE | ID: mdl-29109441

ABSTRACT

The magnetic flux rope is among the most fundamental magnetic configurations in plasma. Although its presence after solar eruptions has been verified by spacecraft measurements near Earth, its formation on the Sun remains elusive, yet is critical to understanding a broad spectrum of phenomena. Here we study the dynamic formation of a magnetic flux rope during a classic two-ribbon flare. Its feet are identified unambiguously with conjugate coronal dimmings completely enclosed by irregular bright rings, which originate and expand outward from the far ends of flare ribbons. The expansion is associated with the rapid ribbon separation during the flare main phase. Counting magnetic flux through the feet and the ribbon-swept area reveals that the rope's core is more twisted than its average of four turns. It propagates to the Earth as a typical magnetic cloud possessing a similar twist profile obtained by the Grad-Shafranov reconstruction of its three dimensional structure.

6.
Nat Commun ; 7: 11522, 2016 05 16.
Article in English | MEDLINE | ID: mdl-27181846

ABSTRACT

Solar eruptions are well-recognized as major drivers of space weather but what causes them remains an open question. Here we show how an eruption is initiated in a non-potential magnetic flux-emerging region using magnetohydrodynamic modelling driven directly by solar magnetograms. Our model simulates the coronal magnetic field following a long-duration quasi-static evolution to its fast eruption. The field morphology resembles a set of extreme ultraviolet images for the whole process. Study of the magnetic field suggests that in this event, the key transition from the pre-eruptive to eruptive state is due to the establishment of a positive feedback between the upward expansion of internal stressed magnetic arcades of new emergence and an external magnetic reconnection which triggers the eruption. Such a nearly realistic simulation of a solar eruption from origin to onset can provide important insight into its cause, and also has the potential for improving space weather modelling.

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