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1.
Zookeys ; 1202: 1-110, 2024.
Article in English | MEDLINE | ID: mdl-38800563

ABSTRACT

Based on several field investigations, many molluscan shells and chondrichthyan teeth, together with other invertebrate and actinopterygian remains were found from the marine Bangkok Clay deposits in Ongkharak, Nakhon Nayok, at a depth of ~ 5-7 m below the topsoil surface. Animal macrofossils recovered from these Holocene marine deposits were identified and their chronological context was investigated in order to reconstruct the paleoenvironments of the area at that time. The majority of marine fossils recovered from the site consist of molluscs, with a total of 63 species identified. Other invertebrate species include a stony coral, a mud lobster, barnacles, and a sea urchin. The vertebrates are represented by fish remains, including carcharhinid shark teeth from at least nine species, stingray and trichiurid teeth, and one sciaenid otolith. The molluscan fauna indicates that the paleoenvironments of the area corresponded to intertidal to sublittoral zones, where some areas were mangrove forests and intertidal mudflats. The fish fauna is dominated by the river shark Glyphis, indicating freshwater influences and possibly occasional brackish conditions. The carbon-14 analysis of mollusc and charcoal remains shows that deposition of the marine sediment sequence began during the mid-Holocene, spanning approximately from 8,800 to 5,300 cal yr BP. This study provides in-depth insights into the diversity of fishes, marine molluscs, and other invertebrates from the Bangkok Clay deposits, supporting the existence of a marine transgression onto the Lower Central Plain of Thailand during the mid-Holocene.

2.
Zookeys ; 1196: 15-78, 2024.
Article in English | MEDLINE | ID: mdl-38560093

ABSTRACT

This paper reassesses the taxonomy and systematics of 11 arboreal snail species in the genus Amphidromus from Vietnam, Cambodia, Indonesia and Laos (A.bozhii Wang, 2019, A.buelowi Fruhstorfer, 1905, A.costifer Smith, 1893, A.haematostoma Möllendorff, 1898, A.ingens Möllendorff, 1900, A.madelineae Thach, 2020, A.metabletus Möllendorff, 1900, A.pankowskianus Thach, 2020, A.placostylus Möllendorff, 1900, A.roseolabiatus Fulton, 1896, and A.thachi Huber, 2015). The taxonomic validity of each species is supported by a phylogenetic analysis of mitochondrial COI and 16S rRNA gene fragments from 17 ingroup taxa. Amphidromusbuelowi was found to comprise two populations from two distant localities, one from Mount Singgalang, West Sumatra, Indonesia and the other from southern Vietnam. The samples from southern Vietnam were previously described as A.asper Haas, 1934 and A.franzhuberi Thach, 2016, but they are now treated as junior synonyms of A.buelowi in this study. In addition, two species from Vietnam are described as new to science, viz. A.asperoides Jirapatrasilp & Lee, sp. nov. and A.ingensoides Jirapatrasilp & Lee, sp. nov., each of which is conchologically comparable to A.buelowi and A.ingens, respectively.

3.
Sci Rep ; 14(1): 1753, 2024 01 19.
Article in English | MEDLINE | ID: mdl-38243053

ABSTRACT

The marine littoral earthworm Pontodrilus litoralis (Grube, 1855) is widely distributed and is reported as a single species. This study utilized an integrative taxonomic approach based upon morphological examination, phylogenetic reconstruction, and molecular species delimitation, to test whether the taxon is a single species or a species complex. For this, a total of 114 P. litoralis specimens collected from North America, Africa, Australia and Oceania, Europe and Asia were used. The phylogenetic analyses revealed deeply divergent mitochondrial lineages and a high level of genetic diversity among P. litoralis populations. Both single and multi-locus species delimitation analyses yielded several molecular operational taxonomic units. Therefore, due to the homogeneity of morphological characteristics, it is likely that the morphospecies P. litoralis is a complex of four or more cryptic species, suggesting that more sampling is required and that the population structure genetic data and gene flow need to be investigated.


Subject(s)
Oligochaeta , Animals , Phylogeny , Oligochaeta/genetics , Mitochondria , Asia , Australia
4.
Zookeys ; 1163: 177-198, 2023.
Article in English | MEDLINE | ID: mdl-37273516

ABSTRACT

The pill millipede genus Hyperglomeris Silvestri, 1917 is reported from Laos for the first time. Two new species, namely H.bicaudata Likhitrakarn, sp. nov. and H.inkhavilayi Likhitrakarn, sp. nov., from Houaphanh and Khammouane provinces, northern Laos, are described and illustrated based on morphological characters and molecular analyses. Sequences of COI gene were used as DNA barcoding markers, and successfully supported the accurate identification of other Glomeridae species. Interspecific divergence of the COI uncorrected p-distance between these new species and other Hyperglomeris species ranged from 7.84-13.07%, while the intraspecific divergence was 0.45% in H.inkhavilayisp. nov. and 5.3% in H.bicaudatasp. nov. The updated status of Hyperglomeris, a map of its distribution, and identification keys for all species are given.

5.
PLoS One ; 17(8): e0272966, 2022.
Article in English | MEDLINE | ID: mdl-36037160

ABSTRACT

Species of colourful arboreal snails of the genus Amphidromus from Southeast Asia commonly exhibit high intraspecific variation in shell morphology. Although highly polymorphic Amphidromus specimens with different colouration have been collected at the same locality and were revealed to possess similar genital organs, there is yet no morphometric or DNA analyses of these different shell morphs. This study is the first to reveal that both striped and stripeless morphs of A. cruentatus from Laos and Vietnam belong to the same mitochondrial (COI and 16S rRNA) lineage. Although the shell colouration between the striped and stripeless morphs is markedly different, morphometric and shell outline-based analyses indicated an overall similarity in shell shape. We also revised the systematics of A. cruentatus, in which we treated similar related species, namely A. eudeli, A. fuscolabris, A. thakhekensis, A. gerberi bolovenensis, A. goldbergi, A. pengzhuoani, A. eichhorsti and A. pankowskiae as junior synonyms of A. cruentatus. Amphidromus daoae, A. anhdaoorum, A. stungtrengensis, A. yangbayensis and A. yenlinhae, which were formerly regarded as junior synonyms, are considered as species different from A. cruentatus based on shell morphology and morphometric analyses. Preliminary phylogenetic analyses also retrieved some Amphidromus species groups as distinct mitochondrial lineages.


Subject(s)
Polymorphism, Genetic , Snails , Animals , Asia, Southeastern , Phylogeny , RNA, Ribosomal, 16S/genetics
6.
Zookeys ; 1119: 1-115, 2022.
Article in English | MEDLINE | ID: mdl-36762355

ABSTRACT

Thailand is located at the crossroads of several biogeographical regions, and boasts a high level of biodiversity, especially among the malacofauna. The most recent checklist of land snail species in Thailand was compiled more than twenty years ago, and so this checklist needs revision and the addition of newly discovered taxa. This study updates the taxonomy and species list of the operculated land snail family Pupinidae from Thailand. This snail family is diverse and abundant, and can be found in various natural habitats in Southeast Asia. Although the taxonomy of some Southeast Asian pupinid genera has been reviewed, studies of Pupina Vignard, 1829, which contains the highest number of species, and a lesser-known genus Pupinella Gray, 1850 are still lacking. Herein we present an annotated checklist with an up-to-date systematic framework of the Pupinidae in Thailand based on both field investigations and literature surveys, and include the taxonomic treatment of all Pupina and Pupinella species from mainland Southeast Asia. This annotated checklist contains 30 nominal species and two subspecies from seven genera currently known to occur in Thailand. We describe two species of Pseudopomatias (P.doiangkhangensis Jirapatrasilp, sp. nov. and P.pallgergelyi Jirapatrasilp, sp. nov.), five species and one subspecies of Pupina (P.bensoni Jirapatrasilp, sp. nov., P.bilabiata Jirapatrasilp, sp. nov., P.godwinausteni Jirapatrasilp, sp. nov., P.latisulci Jirapatrasilp, sp. nov., P.stoliczkai Jirapatrasilp, sp. nov., and P.dorriisanensis Jirapatrasilp, ssp. nov.) as new to science. New records of Coptocheilussumatranus, Pupinellamansuyi, and Rhaphaulustonkinensis are also reported from Thailand. The mainland Southeast Asian Pupina species are classified into three species groups (Pupinaartata group, Pupinaarula group, and Pupinaaureola group) based on the distinction of shell teeth and canals, and operculum. Three species formerly in Pupina from Vietnam are allocated to Pupinella (P.illustris comb. nov., P.sonlaensis comb. nov., and P.thaitranbaii comb. nov.) due to the presence of a funnel-like anterior canal.

7.
Zookeys ; 1049: 43-66, 2021.
Article in English | MEDLINE | ID: mdl-34326679

ABSTRACT

The type series boundary and the name-bearing type designation of each cyclophorid taxon originally described by Godwin-Austen are clarified based on an interpretation that complies with the ICZN. Previous statuses of type specimens designated by previous authors are reconsidered. Lectotypes of Spiraculum oakesi Godwin-Austen, 1915, Spiraculum kempi Godwin-Austen, 1915, Pterocyclos aborensis Godwin-Austen, 1915, Pterocyclos miriensis Godwin-Austen, 1915, Pterocyclos brahmakundensis Godwin-Austen, 1915, Spiraculum luyorensis Godwin-Austen, 1915, Spiraculum putaoensis Godwin-Austen, 1915, and Theobaldius oakesi Godwin-Austen, 1915 are here designated to stabilize the existing nomenclature. In addition, the type specimens of Pterocyclos miriensis and Theobaldius oakesi are photographed and figured for the first time.

8.
Zookeys ; 948: 1-46, 2020.
Article in English | MEDLINE | ID: mdl-32765170

ABSTRACT

Prior to this study, few collections and records were made of the land snails in Cambodia and the historical taxa had never been reviewed. Herein a report on the land snail diversity based on specimens collected recently from karstic and non-karstic areas in southern Cambodia is provided. This checklist presents 36 species of land snails (two Neritimorpha, six Caenogastropoda, and 28 Heterobranchia). Illustrations and brief taxonomic notes/remarks are provided for every species. We also described Georrisa carinata Sutcharit & Jirapatrasilp, sp. nov. based on some distinct shell morphological characters. Since the first descriptions during the colonial period in the nineteenth century, some land snail species (e.g., Trichochloritis norodomiana, Durgella russeola, Anceyoconcha siamensis obesula comb. nov., Anceyoconcha chaudoensis comb. nov., and Succinea tenuis) have not been reported subsequently. This probably reflects a lack of knowledge concerning land snail biodiversity in this country. To our knowledge, this is the first comprehensive survey of land snails in southern Cambodia. A need for more field research and systematic revision of the land snails in this interesting region is also highlighted and demonstrated.

9.
Zookeys ; 862: 23-42, 2019.
Article in English | MEDLINE | ID: mdl-31341384

ABSTRACT

The luminous earthworm Pontodriluslitoralis (Grube, 1855) occurs in a very wide range of subtropical and tropical coastal areas. Morphometrics on size variation (number of segments, body length and diameter) and genetic analysis using the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequence were conducted on 14 populations of P.litoralis from Southeast Asia and Japan. Statistical inference on morphometric data revealed significantly different size variations in the body length and diameter among these 14 populations of P.litoralis. However, discordance between the morphometric and mitochondrial COI gene-based phylogenetic analyses was evident, where the size variations in P.litoralis showed a different pattern from the COI genetic differences. The update on the current distribution of P.litoralis is reported and revealed different aspects of the littoral habitat characteristics between Southeast Asia and Japan.

10.
Mol Phylogenet Evol ; 139: 106531, 2019 10.
Article in English | MEDLINE | ID: mdl-31185298

ABSTRACT

Semi-aquatic freshwater earthworms in the genus Glyphidrilus from Southeast Asia are characterized by both an extreme morphological crypsis among divergent phylogenetic lineages and a high morphological variability within the same phylogenetic lineages. The present study provides a new taxonomic framework for this problematic genus in SE Asia by integrating DNA sequence and morphological data. When single-locus and multilocus multispecies coalescent-based (MSC) species delimitation methods were applied to DNA sequence data, they usually yielded highly incongruent results compared to morphology-based species identifications. This suggested the presence of several cryptic species and high levels of intraspecific morphological variation. Applying reciprocal monophyly to the cytochrome c oxidase subunit 1 (COI) gene tree allowed us to propose the existence of 33 monophyletic species. Yet, often substantially more molecular operational taxonomic units (MOTUs) were obtained when species delimitation was based on COI and 16S rRNA sequences. In contrast, the ITS1 and ITS2 sequences suggested fewer MOTUs and did not recover most of the monophyletic species from the Mekong basin. However, several of these latter taxa were better supported when MSC species delimitation methods were applied to the combined mtDNA and ITS datasets. The ITS2 secondary structure retrieved one unnamed Mekong basin species that was not uncovered by the other methods when applied to ITS2 sequences. In conclusion, based on an integrative taxonomic workflow, 26 Glyphidrilus candidate species were retained and two remained to be confirmed. As such, this study provides evidence to suggest nine species new to science and to synonymize 12 nominal morphospecies. It also illustrates that the uncritical use of COI as a universal DNA barcode may overestimate species diversity because COI may be unable to distinguish between divergent conspecific lineages and different candidate species.


Subject(s)
Aquatic Organisms/classification , Oligochaeta/anatomy & histology , Oligochaeta/classification , Animals , Aquatic Organisms/genetics , Asia, Southeastern , Base Sequence , Bayes Theorem , DNA Barcoding, Taxonomic , DNA, Ribosomal Spacer/chemistry , DNA, Ribosomal Spacer/genetics , Nucleic Acid Conformation , Oligochaeta/genetics , Phylogeny , Polymorphism, Genetic , Species Specificity
11.
Zookeys ; 834: 1-166, 2019.
Article in English | MEDLINE | ID: mdl-31105437

ABSTRACT

The land area of Laos is composed of a large variety of undisturbed habitats, such as high mountainous areas, huge limestone karsts and the lower Mekong Basin. Therefore, Laos is expected to have a high species diversity, especially for the land snails. However, with respect to research on malacology, Laos is probably the least well-researched area for land snail diversity in Indochina (including Laos) over the past few centuries. The handful of species lists have never been systematically revised from the colonial period to the present, so these classifications are outdated. Herein we present the first comprehensive annotated checklist with an up-to-date systematic framework of the land snail fauna in Laos based on both field investigations and literature surveys. This annotated checklist is collectively composed of 231 nominal species (62 'prosobranch' and 169 heterobranches), of which 221 nominal species are illustrated. The type specimens of 143 species from several museum collections and/or 144 species of newly collected specimens are illustrated. There are 58 species recorded as new to the malacofauna of the country, and two new replacement names are proposed as Hemiplectalanxangnica Inkhavilay and Panha, nomen novum (Ariophantidae) and Chloritiskhammouanensis Inkhavilay and Panha, nomen novum (Camaenidae). Four recently described species of the genus Amphidromus from Laos, "thakhekensis", "richgoldbergi", "attapeuensis" and "phuonglinhae" are synonymized with previously described species. In addition, thirteen nominal species are listed as uncertain records that may or may not occur in Laos. This annotated checklist may inspire malacologists to carry on systematic research in this region.

12.
Zootaxa ; 4496(1): 218-237, 2018 Oct 04.
Article in English | MEDLINE | ID: mdl-30313698

ABSTRACT

A new species of the megascolecid earthworm genus Pontodrilus Perrier, 1874, Pontodrilus longissimus sp. n., is described from seashores of Thailand and Peninsular Malaysia. The new species differs from congeners, especially the cosmopolitan P. litoralis (Grube, 1855) in the size of the body, number of segments and the shape of the spermathecae. P. litoralis is redescribed, based on specimens collected from the same region and the same type of habitat. DNA fragments of the mitochondrial cytochrome oxidase subunit I of both species were sequenced. Morphological as well as DNA sequence-based comparisons confirm that P. longissimus sp. n. is a lineage distinct from P. litoralis and in fact a new species. The illustrated descriptions are accompanied by a key to species of Pontodrilus.


Subject(s)
Oligochaeta , Animals , Ecosystem , Malaysia , Thailand
13.
Zootaxa ; 4350(1): 1-46, 2017 Nov 16.
Article in English | MEDLINE | ID: mdl-29245563

ABSTRACT

At present, the millipede fauna of Myanmar comprises 92 species from 34 genera, 13 families and 8 orders, mostly described in 1889-1896. All literature records are cited with updates on species identities, as well as numerous taxonomic problems which make the number of species and even genera still imprecise. The Myanmar millipede fauna contains 70 endemic and five widespread synanthropic species. One species is found to have erroneously been recorded from Myanmar, and is ejected from the list of Myanmar millipedes also because of its uncertain taxonomic status. A complete bibliography on the millipedes of Myanmar, an updated list of the collecting localities and a map of the journeys of Leonardo Fea, the principal collector of Diplopoda in Burma, are also presented.


Subject(s)
Arthropods , Animals , Myanmar
14.
Zootaxa ; 4189(3): zootaxa.4189.3.5, 2016 Nov 10.
Article in English | MEDLINE | ID: mdl-27988747

ABSTRACT

Combining morphological and molecular data is a powerful approach to support the discovery of new species. Here, two new species of the semi-aquatic earthworm genus Glyphidrilus, G. jamiesoni sp. n. and G. kralanhensis sp. n., are described from the Mekong Basin in Cambodia. They are morphologically distinguished by the respective locations of wings and spermathecae; furthermore, G. kralanhensis sp. n. has three pairs of ovaries, probably an autapomorphic trait. In addition, two mitochondrial gene fragments (COI and 16s rRNA) were sequenced of types of the new species and of five further Glyphidrilus species described recently from the Mekong basin in Thailand and Laos. They revealed a high level of genetic divergence of the new species compared to the other earthworm taxa. The evolutionary relationships among the Mekong Glyphidrilus members is discussed with reference to the recent paleogeography of the Mekong River drainage.


Subject(s)
Oligochaeta/anatomy & histology , Oligochaeta/classification , Animal Distribution , Animal Structures/anatomy & histology , Animal Structures/growth & development , Animals , Body Size , Cambodia , DNA, Mitochondrial/genetics , Ecosystem , Female , Male , Oligochaeta/growth & development , Organ Size , Phylogeny , RNA, Ribosomal, 16S/genetics
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