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1.
Environ Sci Process Impacts ; 26(5): 928-941, 2024 May 22.
Article in English | MEDLINE | ID: mdl-38635247

ABSTRACT

Motor vehicles are among the major sources of pollutants and greenhouse gases in urban areas and a transition to "zero emission vehicles" is underway worldwide. However, emissions associated with brake and tire wear will remain. We show here that previously unrecognized volatile and semi-volatile organic compounds, which have a similarity to biomass burning emissions are emitted during braking. These include greenhouse gases or, these classified as Hazardous Air Pollutants, as well as nitrogen-containing organics, nitrogen oxides and ammonia. The distribution and reactivity of these gaseous emissions are such that they can react in air to form ozone and other secondary pollutants with adverse health and climate consequences. Some of the compounds may prove to be unique markers of brake emissions. At higher temperatures, nucleation and growth of nanoparticles is also observed. Regions with high traffic, which are often disadvantaged communities, as well as commuters can be impacted by these emissions even after combustion-powered vehicles are phased out.


Subject(s)
Air Pollutants , Environmental Monitoring , Vehicle Emissions , Volatile Organic Compounds , Volatile Organic Compounds/analysis , Air Pollutants/analysis , Vehicle Emissions/analysis , Environmental Monitoring/methods , Air Pollution/statistics & numerical data , Motor Vehicles
2.
Transl Anim Sci ; 6(4): txac141, 2022 Oct.
Article in English | MEDLINE | ID: mdl-36381952

ABSTRACT

The feeding value for ruminants of green hemp biomass, from the low Δ9-tetrahydrocannabinol (Δ9-THC) variety of Cannabis sativa L., is unknown. Twelve Merino ewes were individually penned and randomly allocated on a stratified liveweight basis to one of two pelleted dietary treatments, control (0% hemp, n = 6) or hemp (42% green hemp biomass, n = 6) that delivered a diet meeting the nutrient requirements of the animals. The experimental period consisted of 17 d dietary and housing adaptation, followed by 7 d total urine and feces collection for determination of apparent nutrient digestibility. A ruminal fluid sample was collected on day 27 and assessed for pH, ammonia, volatile fatty acid (VFA), and cannabinoid concentrations. A blood sample from the jugular vein and incisional subcutaneous fat biopsy from an area around the base of the tail were collected on day 28 with additional fat biopsies taken 35 d and 140 d post-feeding to measure cannabinoids. The dry matter (DM), organic matter (OM), and crude protein (CP) digestibilities, along with total VFA concentration did not differ (P = 0.713) between the two diets; however, acid detergent fiber (ADF) and neutral detergent fiber (NDF) digestibilities (P < 0.001), water intake (P = 0.023), and fecal water output (P < 0.001) were significantly lower for the sheep-fed Hemp. Rumen pH did not vary (P = 0.256) between diets, but ruminal ammonia concentration was significantly lower (P = 0.024) for sheep consuming Hemp. Sheep-fed Hemp had significantly greater molar proportions of butyric (P = 0.039) and hexanoic (P = 0.012) acids and lower molar proportions of propionic acid (P = 0.003). There were no differences between diets for N intake (P = 0.175), fecal N output (P = 0.253), and N balance (P = 0.695), with all sheep in positive N balance; however, there was significantly lower (P = 0.001) urinary N output for sheep-fed Hemp. Cannabidiolic acid (CBDA) and tetrahydrocannabinolic acid (THCA) were detected in plasma of all sheep-fed Hemp. ∆9-tetrahydrocannabinol was present in the subcutaneous fat of four of the six sheep on the final day of being fed Hemp, and in all (six) sheep 35 d post-feeding and one sheep 140 d post-feeding Hemp. No cannabinoids were detected in the corresponding samples taken from the sheep-fed Control. Thus, despite green hemp biomass being nutritionally a suitable feed for ruminants, under current Food Standards in Australia, the presence of these cannabinoid residues restricts its use in ruminant diets.

3.
Rev Esp Anestesiol Reanim ; 64(9): 499-505, 2017 Nov.
Article in English, Spanish | MEDLINE | ID: mdl-28366293

ABSTRACT

OBJECTIVE: Octogenarians undergo anatomic and physiopathologic degradation, making airway management problematic, specific to intubation, bag mask ventilation, leading to desaturation and aspiration. Our study's aim was to examine the process of airway management regarding the steps involved in intubation and any deviations or delays in the tasks. MATERIALS AND METHODS: An institutional review board-approved difficult airway prospective observational study in older adults was conducted. Inclusion criteria included airway features indicative of difficult airway, history of failed intubation, the planned use of specialized airway devices, and/or expected airway complications due to comorbidities. Patients 80 years and older were analyzed. Demographic data collected were age, weight, BMI, gender, ASA classification, airway indices, diagnosis, and procedures. Problems with intubation (INT) (≥3 intubation attempts), laborious assisted ventilation (VEN) (2-person and/or application of CPAP>20cmH2O), and complications with oxygenation (OXY) (SpO2<95%) were analyzed. RESULTS: Of the 41 patients enrolled in the study, 3 (7.3%) had all 3: problematic (INT), laborious (VEN), and desaturated (OXY); 8 (19.5%) patients experienced problematic (INT), 20 (48.8%) were described as laborious (VEN), and 14 (34.1%) experienced complications with (OXY). CONCLUSION: In octogenarians, we found a low incidence of difficulty with INT-VEN-OXY together. However, bag mask ventilation was found to be laborious with a high incidence of desaturation. Success rate of INT as a sole metric may not accurately describe the process of the intubation. We recommend alternative airway devices and techniques and the establishment of protocols for airway management in the elderly.


Subject(s)
Intubation, Intratracheal/methods , Respiration, Artificial/methods , Aged, 80 and over , Body Mass Index , Comorbidity , Female , Humans , Hypoxia/blood , Hypoxia/etiology , Hypoxia/prevention & control , Intubation, Intratracheal/instrumentation , Laryngeal Masks , Male , Oxygen/blood , Prospective Studies , Respiration, Artificial/instrumentation , Severity of Illness Index
4.
J Pediatr Surg ; 49(8): 1259-63, 2014 Aug.
Article in English | MEDLINE | ID: mdl-25092086

ABSTRACT

BACKGROUND: Minimally invasive repair of pectus excavatum has become an established method for repair of pectus excavatum. Bar displacement or rotation remains the most common complication of this repair requiring return to the operating room. METHODS: Retrospective review of all patients at a single institution who underwent repair of pectus excavatum using FiberWire for bar stabilization between December 2009 and March 2013 was undertaken. RESULTS: 93 patients underwent minimally invasive pectus repair using FiberWire during the study period. The patients included 73 males and 20 females, with an average age of 14.6years (range 7-21years). Mean operative time was 102minutes (range 56-198minutes). No patients developed wound complications, two patients developed pain because of bar migration and required return to the OR, and no patients had recurrence of their pectus defect because of bar migration during the study period. Median length of follow-up was 17months (range 3-36months). CONCLUSION: Stabilization of pectus bars using circumferential rib fixation with FiberWire at multiple points on both sides of the bar appears to be effective in preventing bar rotation and displacement, and requires minimal change to the operation as it has been previously described. Early experience shows a low rate of complications.


Subject(s)
Bone Plates , Bone Wires , Funnel Chest/surgery , Minimally Invasive Surgical Procedures , Ribs/surgery , Suture Techniques/instrumentation , Thoracoplasty/methods , Adolescent , Child , Female , Follow-Up Studies , Funnel Chest/diagnostic imaging , Humans , Male , Radiography, Thoracic , Retrospective Studies , Ribs/diagnostic imaging , Treatment Outcome , Young Adult
5.
Cell Death Dis ; 1: e74, 2010.
Article in English | MEDLINE | ID: mdl-21151771

ABSTRACT

The transcription factor p63 is required for proper epidermal barrier formation and maintenance. Herein, we used chromatin immunoprecipitation coupled with DNA sequencing to identify novel p63 target genes involved in normal human epidermal keratinocyte (NHEKs) growth and differentiation. We identified over 2000 genomic sites bound by p63, of which 82 were also transcriptionally regulated by p63 in NHEKs. Through the discovery of interleukin-1-α as a p63 target gene, we identified that p63 is a regulator of epithelial-mesenchymal crosstalk. Further, three-dimensional organotypic co-cultures revealed TCF7L1, another novel p63 target gene, as a regulator of epidermal proliferation and differentiation, providing a mechanism by which p63 maintains the proliferative potential of basal epidermal cells. The discovery of new target genes links p63 to diverse signaling pathways required for epidermal development, including regulation of paracrine signaling to proliferative potential. Further mechanistic insight into p63 regulation of epidermal cell growth and differentiation is provided by the identification of a number of novel p63 target genes in this study.


Subject(s)
Keratinocytes/metabolism , Paracrine Communication , Trans-Activators/metabolism , Tumor Suppressor Proteins/metabolism , Binding Sites , Cell Differentiation , Cell Line , Chromatin Immunoprecipitation , Gene Expression Regulation , Humans , Interleukin-1alpha/genetics , Interleukin-1alpha/metabolism , Keratinocytes/cytology , RNA Interference , RNA, Small Interfering/metabolism , Trans-Activators/genetics , Transcription Factor 7-Like 1 Protein/genetics , Transcription Factor 7-Like 1 Protein/metabolism , Transcription Factors , Tumor Suppressor Proteins/genetics
6.
Insect Mol Biol ; 19(4): 473-80, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20408903

ABSTRACT

Endoparasitic hymenoptera inject maternal factors into the host, along with their eggs, to subvert the host immune system. The venom protein, Vn50, previously characterized from the wasp Cotesia rubecula inhibits prophenoloxidase activation in its host Pieris rapae and in another lepidopteran, Manduca sexta. We generated a stable line in the model insect, Drosophila melanogaster, which ectopically expresses Vn50. Results indicated that Vn50 expression accelerates larval development, increases oviposition and reduces melanization in the haemolymph of the transgenic flies. Since melanization is known to be an important facet of the insect immune response, we examined the impact of Vn50 expression on susceptibility to pathogens. Transgenic Vn50 flies challenged with the fungus Beauveria bassiana had increased mortality compared with control flies, but there was no significant change in survival in flies challenged with the pathogenic bacteria, Serratia marcescens. Interestingly, mortality induced by the natural pathogen Drosophila C virus was significantly delayed in Vn50 expressing flies. This indicates a wider range of potential hosts that may be affected by Vn50 and its potential for manipulation of immune system in insects.


Subject(s)
Drosophila melanogaster/growth & development , Drosophila melanogaster/immunology , Oviposition/physiology , Parasites/metabolism , Wasp Venoms/metabolism , Animals , Animals, Genetically Modified , Beauveria/physiology , Drosophila melanogaster/microbiology , Drosophila melanogaster/parasitology , Female , Larva/growth & development , Larva/microbiology , Male , Melanins/biosynthesis , Pupa/growth & development , Pupa/microbiology , Reproducibility of Results , Serratia/physiology , Survival Analysis , Transformation, Genetic
7.
Diabetes Obes Metab ; 11 Suppl 1: 25-30, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19143812

ABSTRACT

AIM: The goal of this study was to develop and implement methodology that would aid in the analysis of extended high-density single nucleotide polymorphism (SNP) major histocompatibility complex (MHC) haplotypes combined with human leucocyte antigen (HLA) alleles in relation to type 1 diabetes risk. METHODS: High-density SNP genotype data (2918 SNPs) across the MHC from the Type 1 Diabetes Genetics Consortium (1240 families), in addition to HLA data, were processed into haplotypes using PedCheck and Merlin, and extended DR3 haplotypes were analysed. RESULTS: With this large dense set of SNPs, the conservation of DR3-B8-A1 (8.1) haplotypes spanned the MHC (>/=99% SNP identity). Forty-seven individuals homozygous for the 8.1 haplotype also shared the same homozygous genotype at four 'sentinel' SNPs (rs2157678 'T', rs3130380 'A', rs3094628 'C' and rs3130352 'T'). Conservation extended from HLA-DQB1 to the telomeric end of the SNP panels (3.4 Mb total). In addition, we found that the 8.1 haplotype is associated with lower risk than other DR3 haplotypes by both haplotypic and genotypic analyses [haplotype: p = 0.009, odds ratio (OR) = 0.65; genotype: p = 6.3 x 10(-5), OR = 0.27]. The 8.1 haplotype (from genotypic analyses) is associated with lower risk than the high-risk DR3-B18-A30 haplotype (p = 0.01, OR = 0.23), but the DR3-B18-A30 haplotype did not differ from other non-8.1 DR3 haplotypes relative to diabetes association. CONCLUSION: The 8.1 haplotype demonstrates extreme conservation (>3.4 Mb) and is associated with significantly lower risk for type 1 diabetes than other DR3 haplotypes.


Subject(s)
Diabetes Mellitus, Type 1/genetics , HLA-DR3 Antigen/genetics , Polymorphism, Single Nucleotide/genetics , Conserved Sequence , Genetic Predisposition to Disease/genetics , Genotype , Haplotypes , Heterozygote , Homozygote , Humans , Pedigree , Risk Factors
8.
Phytopathology ; 98(7): 810-4, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18943257

ABSTRACT

Fiji leaf gall (FLG) is caused by the Reovirus, Fiji disease virus (FDV), which is transmitted to sugarcane by planthoppers of the genus Perkinsiella. Low vector transmission rates and slow disease symptom development make experimentation within the FDV-Perkinsiella-sugarcane system inherently difficult. A laboratory-based technique was devised to rear the vector using sugarcane leaves as a food source. Planthoppers were reared on sugarcane leaf segments embedded in agarose enclosed within plastic containers. To provide a nondestructive assay for determination of the inoculation potential of planthoppers, FDV was detected by reverse transcription-polymerase chain reaction (RT-PCR) in newly infected sugarcane leaf segments following exposure to viruliferous planthoppers. Leaf segment inoculation correlated with development of FLG symptoms in whole plants that were fed on by the same planthoppers. Analysis of FDV RNAs within the planthopper, measured by quantitative RT-PCR (qRT-PCR), indicated that FDV RNA concentration was associated with successful inoculation of the leaf segment, transmission of FDV to sugarcane and subsequent development of FLG in plants. Quantification of FDV RNA within planthoppers provided an additional measure to assess vector competence in individuals.


Subject(s)
Hemiptera/virology , Plant Leaves/virology , Reoviridae/physiology , Saccharum/virology , Animals , Hemiptera/physiology , Insect Vectors/physiology , Insect Vectors/virology , Plant Diseases/parasitology , Plant Diseases/virology , Plant Leaves/parasitology , RNA, Viral/genetics , Reoviridae/genetics , Reverse Transcriptase Polymerase Chain Reaction , Saccharum/parasitology
9.
J Virol ; 75(24): 12220-7, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11711613

ABSTRACT

Pariacoto virus (PaV) is a nodavirus that was recently isolated in Peru from the Southern armyworm, Spodoptera eridania. Virus particles are non enveloped and about 30 nm in diameter and have T=3 icosahedral symmetry. The 3.0-A crystal structure shows that about 35% of the genomic RNA is icosahedrally ordered, with the RNA forming a dodecahedral cage of 25-nucleotide (nt) duplexes that underlie the inner surface of the capsid. The PaV genome comprises two single-stranded, positive-sense RNAs: RNA1 (3,011 nt), which encodes the 108-kDa catalytic subunit of the RNA-dependent RNA polymerase, and RNA2 (1,311 nt), which encodes the 43-kDa capsid protein precursor alpha. In order to apply molecular genetics to the structure and assembly of PaV, we identified susceptible cell lines and developed a reverse genetic system for this virus. Cell lines that were susceptible to infection by PaV included those from Spodoptera exigua, Helicoverpa zea and Aedes albopictus, whereas cells from Drosophila melanogaster and Spodoptera frugiperda were refractory to infection. To recover virus from molecular clones, full-length cDNAs of PaV RNAs 1 and 2 were cotranscribed by T7 RNA polymerase in baby hamster kidney cells that expressed T7 RNA polymerase. Lysates of these cells were infectious both for cultured cells from Helicoverpa zea (corn earworm) and for larvae of Galleria mellonella (greater wax moth). The combination of infectious cDNA clones, cell culture infectivity, and the ability to produce milligram amounts of virus allows the application of DNA-based genetic methods to the study of PaV structure and assembly.


Subject(s)
DNA, Complementary/genetics , Nodaviridae/genetics , Animals , Cell Line , Cricetinae , Nodaviridae/growth & development , Nodaviridae/physiology , RNA, Viral/biosynthesis , Spodoptera , Transcription, Genetic , Viral Proteins/biosynthesis , Virus Assembly
10.
Nat Struct Biol ; 8(1): 77-83, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11135676

ABSTRACT

The 3.0 A resolution crystal structure of Pariacoto virus (PaV) reveals extensive interactions between portions of the viral RNA genome and the icosahedral capsid. Under the protein shell of the T = 3 quasi equivalent capsid lies a dodecahedral cage composed of RNA duplex that accounts for approximately 35% of the single-stranded RNA genome. The highly basic N-terminal regions (residues 7-54) of the subunits, forming pentamers (A subunits) are clearly visible in the density map and make numerous interactions with the RNA cage. The C-terminal segments (residues 394-401) of the A subunits lie in channels near the quasi three-fold axes. Electron cryo-microscopy and image reconstruction of PaV particles clearly show the dodecahedral RNA cage.


Subject(s)
Insect Viruses/genetics , Insect Viruses/ultrastructure , RNA Viruses/genetics , RNA Viruses/ultrastructure , RNA, Viral/ultrastructure , Spodoptera/virology , Amino Acid Sequence , Animals , Capsid/chemistry , Capsid/genetics , Capsid/metabolism , Capsid/ultrastructure , Cryoelectron Microscopy , Crystallography, X-Ray , Genome, Viral , Insect Viruses/chemistry , Models, Molecular , Molecular Sequence Data , Mutation , Nucleic Acid Conformation , Protein Structure, Quaternary , Protein Structure, Secondary , Protein Subunits , RNA Viruses/chemistry , RNA, Viral/chemistry , RNA, Viral/genetics , Sequence Alignment
11.
IUBMB Life ; 49(3): 223-7, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10868914

ABSTRACT

A precise, reproducible deletion made during in vitro reverse transcription of RNA2 from the icosahedral positive-stranded Helicoverpa armigera stunt virus (Tetraviridae) is described. The deletion, located between two hexamer repeats, is a 50-base sequence that includes one copy of the hexamer repeat. Only the Moloney murine leukemia virus reverse transcriptase and its derivative Superscript I, carrying a deletion of the carboxy-terminal RNase H region, showed this response, indicating a template-switching mechanism different from one proposed that involves a RNase H-dependent strand transfer. Superscript II, however, which carries point mutations to reduce RNase H activity, does not cause a deletion. A possible mechanism involves the enzyme pausing at the 3' side of a stem-loop structure and the 3' end of the nascent DNA strand separating from the template and reannealing to the upstream hexamer repeat.


Subject(s)
DNA, Complementary/metabolism , Gene Deletion , RNA/metabolism , Transcription, Genetic , Base Sequence , DNA Replication , DNA, Viral , Molecular Sequence Data , Moloney murine leukemia virus/enzymology , Moloney murine leukemia virus/genetics , Nucleic Acid Conformation , RNA/genetics , Reverse Transcriptase Polymerase Chain Reaction , Ribonuclease H/genetics , Sequence Analysis, DNA , Viruses/enzymology , Viruses/genetics
12.
J Virol ; 74(11): 5123-32, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10799587

ABSTRACT

Pariacoto virus (PaV) was recently isolated in Peru from the Southern armyworm (Spodoptera eridania). PaV particles are isometric, nonenveloped, and about 30 nm in diameter. The virus has a bipartite RNA genome and a single major capsid protein with a molecular mass of 39.0 kDa, features that support its classification as a Nodavirus. As such, PaV is the first Alphanodavirus to have been isolated from outside Australasia. Here we report that PaV replicates in wax moth larvae and that PaV genomic RNAs replicate when transfected into cultured baby hamster kidney cells. The complete nucleotide sequences of both segments of the bipartite RNA genome were determined. The larger genome segment, RNA1, is 3,011 nucleotides long and contains a 973-amino-acid open reading frame (ORF) encoding protein A, the viral contribution to the RNA replicase. During replication, a 414-nucleotide long subgenomic RNA (RNA3) is synthesized which is coterminal with the 3' end of RNA1. RNA3 contains a small ORF which could encode a protein of 90 amino acids similar to the B2 protein of other alphanodaviruses. RNA2 contains 1,311 nucleotides and encodes the 401 amino acids of the capsid protein precursor alpha. The amino acid sequences of the PaV capsid protein and the replicase subunit share 41 and 26% identity with homologous proteins of Flock house virus, the best characterized of the alphanodaviruses. These and other sequence comparisons indicate that PaV is evolutionarily the most distant of the alphanodaviruses described to date, consistent with its novel geographic origin. Although the PaV capsid precursor is cleaved into the two mature capsid proteins beta and gamma, the amino acid sequence at the cleavage site, which is Asn/Ala in all other alphanodaviruses, is Asn/Ser in PaV. To facilitate the investigation of PaV replication in cultured cells, we constructed plasmids that transcribed full-length PaV RNAs with authentic 5' and 3' termini. Transcription of these plasmids in cells recreated the replication of PaV RNA1 and RNA2, synthesis of subgenomic RNA3, and translation of viral proteins A and alpha.


Subject(s)
Insect Viruses/genetics , RNA Viruses/genetics , Amino Acid Sequence , Animals , Asia , Australia , Base Sequence , Cell Line , Chlorocebus aethiops , Cloning, Molecular , Cricetinae , DNA, Complementary , Drosophila/cytology , Genome, Viral , Humans , Insect Viruses/classification , Insect Viruses/isolation & purification , Molecular Sequence Data , Moths , Peru , RNA Viruses/classification , RNA Viruses/isolation & purification , RNA, Viral/analysis , Sequence Analysis, RNA , Sequence Homology, Amino Acid , Spodoptera/virology , Vero Cells
13.
J Invertebr Pathol ; 73(3): 248-54, 1999 May.
Article in English | MEDLINE | ID: mdl-10222177

ABSTRACT

Reverse transcription coupled with polymerase chain reaction and restriction enzyme analysis was used to characterize 12 Drosophila C virus isolates from geographically different regions. A 1.2-kb fragment was amplified from cDNA and profiles from digestion with 20 restriction enzymes were generated. Analysis of the restriction fragment data gave estimates of nucleotide divergence of 0-10% between isolates. The isolates were grouped on the basis of genetic distance estimates derived from the restriction data. For the isolates from which a single genotype could be purified, a geographical pattern in the distribution of viral genotypes was identified. The 4 Moroccan isolates were very closely related to each other, differing in only 1 restriction profile. The 2 Australian isolates were each other's closest relatives, as were the 2 isolates first recovered in France. The PCR-RFLP technique used in this study has provided us with a simple procedure which can be used to characterize DCV isolates. A single enzyme, Taq I, generated 5 distinct and diagnostic restriction fragment patterns, which allowed easy assignment of isolates to one of the five viral genotypes identified in this study.


Subject(s)
Insect Viruses/genetics , Picornaviridae/genetics , Animals , Drosophila melanogaster/virology , Insect Viruses/classification , Insect Viruses/isolation & purification , Picornaviridae/classification , Picornaviridae/isolation & purification , Polymorphism, Restriction Fragment Length , Restriction Mapping , Reverse Transcriptase Polymerase Chain Reaction
14.
J Gen Virol ; 79 ( Pt 1): 191-203, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9460942

ABSTRACT

The complete nucleotide sequence of the genomic RNA from the insect picorna-like virus Drosophila C virus (DCV) was determined. The DCV sequence predicts a genome organization different to that of other RNA virus families whose sequences are known. The single-stranded positive-sense genomic RNA is 9264 nucleotides in length and contains two large open reading frames (ORFs) which are separated by 191 nucleotides. The 5' ORF contains regions of similarities with the RNA-dependent RNA polymerase, helicase and protease domains of viruses from the picornavirus, comovirus and sequivirus families. The 3' ORF encodes the capsid proteins as confirmed by N-terminal sequence analysis of these proteins. The capsid protein coding region is unusual in two ways: firstly the cistron appears to lack an initiating methionine and secondly no subgenomic RNA is produced, suggesting that the proteins may be translated through internal initiation of translation from the genomic length RNA. The finding of this novel genome organization for DCV shows that this virus is not a member of the Picornaviridae as previously thought, but belongs to a distinct and hitherto unrecognized virus family.


Subject(s)
Drosophila melanogaster/virology , Genome, Viral , Insect Viruses/genetics , Picornaviridae/genetics , Amino Acid Sequence , Animals , Base Sequence , Capsid/genetics , Conserved Sequence , DNA, Complementary , Insect Viruses/classification , Molecular Sequence Data , Open Reading Frames , Picornaviridae/classification , RNA, Viral , Sequence Homology, Amino Acid
15.
J Leukoc Biol ; 62(5): 588-97, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9365113

ABSTRACT

By reverse transcriptase-polymerase chain reaction, enzyme-linked immunosorbent assay, and immunohistochemistry, MGSA-alpha, -beta, -gamma, and CXCR2 mRNA expression and proteins are detected in 7 out of 10 human melanoma lesions. The biological consequence of constitutive expression of the MGSA/GRO chemokine in immortalized melanocytes was tested in SCID and nude mouse models. Continuous expression of MGSA/GRO-alpha, -beta, or -gamma in immortalized melan-a mouse melanocytes results in nearly 100% tumor formation for each of the clones tested, whereas clones expressing only the neomycin resistance vector form tumors <10% of the time. Moreover, antibodies to the MGSA/GRO proteins slow or inhibit the formation of tumors in the SCID mouse model and block the angiogenic response to conditioned medium from the tumor-producing clones. Transcription of the MGSA/GRO chemokines is regulated by an enhancesome-like complex comprised of the nuclear factor-kappaB (NF-kappaB), HMG(I)Y, IUR, and Sp1 elements. In Hs294T melanoma cells the half life of the IKB protein is shortened in comparison to normal retinal epithelial cells, facilitating the endogenous nuclear localization of NF-kappaB. We propose that this endogenous nuclear NF-kappaB, working in concert with the 115-kDa IUR-binding factor, promotes constitutive expression of MGSA/GRO genes.


Subject(s)
Chemokines, CXC , Chemokines/biosynthesis , Chemotactic Factors/biosynthesis , Growth Substances/biosynthesis , Intercellular Signaling Peptides and Proteins , Melanoma/metabolism , Melanoma/pathology , Animals , Chemokine CXCL1 , Disease Progression , Humans , Mice
16.
Am J Obstet Gynecol ; 176(6): S240-5, 1997 Jun.
Article in English | MEDLINE | ID: mdl-9215215

ABSTRACT

OBJECTIVES: The purpose of our study was to establish breast epithelial cell cultures and cell lines from peoples of African origin (blacks). It is presumed that the biology of breast cancer in women of African origin has unique aspects that can be explored using cultured breast epithelial cells. STUDY DESIGN: Biopsy specimens were obtained from black women undergoing radical or modified mastectomies. Normal cell cultures were established using tissue from reduction mammaplasties or the milk of lactating mothers. The tissue specimens were lacerated, digested with collagenase solution, and plated on tissue culture plates. To extend the life of the epithelial cells in culture, they are transformed with SV40 virus. RESULTS: We have maintained breast tumor cells in culture from a 27-year-old black woman for more than 1 month. CONCLUSION: Despite the difficulty of establishing epithelial cell cultures, we have maintained breast tumor cells from blacks in culture for an extended period to allow characterization.


Subject(s)
Black People , Breast Neoplasms/pathology , Breast/cytology , Cell Culture Techniques/methods , Adult , Africa/ethnology , Biopsy , Breast/pathology , Breast Neoplasms/ethnology , Breast Neoplasms/genetics , Cell Line , Epithelial Cells , Epithelium/pathology , Female , Humans , Milk, Human/cytology , Tumor Cells, Cultured , White People
17.
Genetica ; 97(1): 23-31, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8851880

ABSTRACT

We report the cloning of hermit, a member of the hAT family of transposable elements from the genome of the Australian sheep blowfly, Lucilia cuprina. Hermit is 2716 bp long and is 49% homologous to the autonomous hobo element, HFL1, at the nucleic acid level. Hermit has 15 bp terminal inverted repeats that share 10 bp with the terminal inverted repeats of HFL1. Conceptual translation reveals a 583 residue open reading frame (ORF) that is 64% similar and 42% identical to the HFL1 ORF. However, the sequence of the hermit element contains two frameshifts within the putative ORF, indication that hermit is an inactive element. Analysis of L. cuprina strains from within and outside Australia suggested that hermit is present as a single copy in all the genomes analysed.


Subject(s)
DNA Transposable Elements/genetics , Diptera/genetics , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , Molecular Sequence Data , Open Reading Frames/genetics , Repetitive Sequences, Nucleic Acid/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid
18.
Arch Virol ; 141(8): 1509-22, 1996.
Article in English | MEDLINE | ID: mdl-8856030

ABSTRACT

Two new isolates of cricket paralysis virus, TAR and SIM, are described that were originally isolated from laboratory colonies of Drosophila melanogaster and Drosophila simulans respectively. Using a combination of biological, serological and molecular characters it was possible to distinguish the SIM isolate from all other isolates and it is thus described as a new strain; CrPVSIM. The TAR isolate however, was indistinguishable from the CrPV reference isolate CrPVVIC/GM/D2(2)/Gm/D2(2) (Teleogryllus commodus, Victoria, Australia, 1968). The molecular characters used in the present study were obtained by combining PCR and restriction endonuclease digestion of the amplified fragments. This work demonstrates that such molecular characters, when used in combination with others, provide a powerful set of taxonomic characters for classifying CrPV isolates and strains and assessing their genetic relatedness.


Subject(s)
Drosophila/virology , Gryllidae/virology , Insect Viruses/classification , Picornaviridae/classification , Aedes/cytology , Animals , Australia , Bees , Cell Line , Drosophila melanogaster/virology , Insect Viruses/genetics , Insect Viruses/immunology , Insect Viruses/isolation & purification , Moths/cytology , Nucleic Acid Hybridization , Phylogeny , Picornaviridae/genetics , Picornaviridae/immunology , Picornaviridae/isolation & purification , Polymerase Chain Reaction , Rabbits , Restriction Mapping , Spodoptera/cytology
19.
Virology ; 208(1): 84-98, 1995 Apr 01.
Article in English | MEDLINE | ID: mdl-11831734

ABSTRACT

In this paper we report the complete nucleotide sequence of the larger segment (5312 nucleotides) of the bipartite RNA genome of Helicoverpa armigera stunt tetravirus (HaSV). HaSV therefore becomes the first member of the Tetraviridae, a virus family with a host range restricted to lepidopteran insects, whose genome has been completely sequenced. HaSV RNA 1 encodes a 187K protein which includes three domains conserved in RNA-dependent RNA polymerases of RNA viruses in the alpha-like superfamily. Analysis of the replicase sequence confirms the status of the Tetraviridae as a distinct family within this superfamily, which includes animal, plant, and insect viruses, and shows the least-distantly related replicase for all three domains to be that of the hepatitis E virus. Another feature of the nonpolyadenylated HaSV genomic RNAs is a well-conserved 3'-terminal tRNA-like structure, the first such structure discerned in an animal virus. However, in contrast to the tRNA-like structures on some plant virus RNAs, the HaSV structure, which has a valine anticodon (CAU), appears to form without a pseudoknot and therefore resembles authentic tRNA(Val) more closely than do the plant viral structures. The implications of these observations for our understanding of RNA virus evolution are discussed.


Subject(s)
DNA-Directed RNA Polymerases/genetics , Insect Viruses/genetics , Lepidoptera/virology , RNA, Viral/genetics , 3' Untranslated Regions , Amino Acid Sequence , Animals , Cloning, Molecular , DNA, Complementary/analysis , DNA, Complementary/genetics , DNA-Directed RNA Polymerases/metabolism , Genome, Viral , Molecular Sequence Data , RNA, Transfer/genetics , RNA, Transfer/metabolism , Sequence Alignment
20.
J Gen Virol ; 76 ( Pt 4): 799-811, 1995 Apr.
Article in English | MEDLINE | ID: mdl-9049325

ABSTRACT

The complete nucleotide sequence of RNA2 of Helicoverpa armigera stunt virus (HaSV), a member of the Tetraviridae, was determined by characterization of cloned cDNA and PCR products and direct sequencing of genomic RNA. The capped, positive sense, single-stranded RNA is 2478 nucleotides in length and has two overlapping open reading frames (ORFs) likely to be cistrons which are situated between terminal non-coding regions of 282 and 168 bases, 5' and 3', respectively. Extensive secondary structure of the RNA strand is indicated, including a tRNA-like structure at the 3' terminus which is the first such structure discerned in an animal virus. The first ORF encodes a 17 kDa PEST protein (p17) of unknown function while the second ORF encodes the 71 kDa coat protein precursor (p71) that is cleaved at an Asn-Phe site into the 64 kDa and 7 kDa coat proteins. The precursor coat protein is 66% identical to that of another tetravirus, the Nudaurelia omega virus, with most of the difference residing in a 165 amino acid region located in the middle of the sequence. Despite the extensive similarity, no serological relationship was observed between the two viruses, suggesting that the dissimilar region is exposed on the capsid exterior. Expression in bacteria of the two RNA2 gene products shows they are likely to be expressed by a leaky scan-through mechanism. Bacterial expression of p71 did not produce virus-like particles while expression of p17 produced large arrays of mostly hollow, hexagonal tube-like structures.


Subject(s)
Gene Expression , Genes, Viral , Insect Viruses/genetics , Moths/virology , RNA Viruses/genetics , RNA, Viral , Amino Acid Sequence , Animals , Base Sequence , Capsid/chemistry , Capsid/immunology , Cloning, Molecular , Escherichia coli/metabolism , Insect Viruses/metabolism , Insect Viruses/ultrastructure , Molecular Sequence Data , Nucleic Acid Conformation , Open Reading Frames , Protein Precursors/chemistry , Protein Precursors/immunology , RNA Viruses/metabolism , RNA Viruses/ultrastructure , Recombinant Fusion Proteins/genetics , Sequence Homology, Amino Acid
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