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1.
Org Biomol Chem ; 14(40): 9549-9553, 2016 Oct 12.
Article in English | MEDLINE | ID: mdl-27722696

ABSTRACT

An ideal drug should be highly effective, non-toxic and be delivered by a convenient and painless single dose. We are still far from such optimal treatment but peptides, with their high target selectivity and low toxicity profiles, provide a very attractive platform from which to strive towards it. One of the major limitations of peptide drugs is their high clearance rates, which limit dosage regimen options. Conjugation to antibody Fc domains is a viable strategy to improve peptide stability by increasing their hydrodynamic radius and hijacking the Fc recycling pathway. We report the use of a split-intein based semi-synthetic approach to site-specifically conjugate a synthetic integrin binding peptide to an Fc domain. The strategy described here allows conjugating synthetic peptides to Fc domains, which is not possible via genetic methods, fully maintaining the ability of both the Fc domain and the bioactive peptide to interact with their binding partners.


Subject(s)
Immunoglobulin Fc Fragments/metabolism , Peptides, Cyclic/metabolism , Amino Acid Sequence , Binding Sites , Humans , Hydrolysis , Immunoglobulin Fc Fragments/chemistry , Integrin alphaVbeta3/metabolism
2.
Biochemistry ; 45(47): 14012-20, 2006 Nov 28.
Article in English | MEDLINE | ID: mdl-17115696

ABSTRACT

Tryptophan residues often are found at the lipid-aqueous interface region of membrane-spanning proteins, including ion channels, where they are thought to be important determinants of protein structure and function. To better understand how Trp residues modulate the function of membrane-spanning channels, we have examined the effects of Trp replacements on the structure and function of gramicidin A channels. Analogues of gramicidin A in which the Trp residues at positions 9, 11, 13, and 15 were sequentially replaced with Gly were synthesized, and the three-dimensional structure of each analogue was determined using a combination of two-dimensional NMR techniques and distance geometry-simulated annealing structure calculations. Though Trp --> Gly substitutions destabilize the beta6.3-helical gA channel structure, it is possible to determine the structure of analogues with Trp --> Gly substitutions at positions 11, 13, and 15, but not for the analogue with the Trp --> Gly substitution at position 9. The Gly11-, Gly13-, and Gly15-gA analogues form channels that adopt a backbone fold identical to that of native gramicidin A, with only small changes in the side chain conformations of the unsubstituted residues. Single-channel current measurements show that the channel function and lifetime of the analogues are significantly affected by the Trp --> Gly replacements. The conductance variations appear to be caused by sequential removal of the Trp dipoles, which alter the ion-dipole interactions that modulate ion movement. The lifetime variations did not appear to follow a clear pattern.


Subject(s)
Glycine/chemistry , Gramicidin/metabolism , Amino Acid Substitution , Gramicidin/chemistry , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular
3.
Biophys J ; 88(1): 224-34, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15501932

ABSTRACT

The common occurrence of Trp residues at the aqueous-lipid interface region of transmembrane channels is thought to be indicative of its importance for insertion and stabilization of the channel in membranes. To further investigate the effects of Trp-->Phe substitution on the structure and function of the gramicidin channel, four analogs of gramicidin A have been synthesized in which the tryptophan residues at positions 9, 11, 13, and 15 are sequentially replaced with phenylalanine. The three-dimensional structure of each viable analog has been determined using a combination of two-dimensional NMR techniques and distance geometry-simulated annealing structure calculations. These phenylalanine analogs adopt a homodimer motif, consisting of two beta6.3 helices joined by six hydrogen bonds at their NH2-termini. The replacement of the tryptophan residues does not have a significant effect on the backbone structure of the channels when compared to native gramicidin A, and only small effects are seen on side-chain conformations. Single-channel conductance measurements have shown that the conductance and lifetime of the channels are significantly affected by the replacement of the tryptophan residues (Wallace, 2000; Becker et al., 1991). The variation in conductance appears to be caused by the sequential removal of a tryptophan dipole, thereby removing the ion-dipole interaction at the channel entrance and at the ion binding site. Channel lifetime variations appear to be related to changing side chain-lipid interactions. This is supported by data relating to transport and incorporation kinetics.


Subject(s)
Anti-Bacterial Agents/chemistry , Gramicidin/chemistry , Lipid Bilayers/chemistry , Phenylalanine/genetics , Sodium Dodecyl Sulfate/chemistry , Amino Acid Motifs , Anti-Bacterial Agents/pharmacology , Dimerization , Electrophysiology , Entropy , Gramicidin/pharmacology , Hot Temperature , Ions , Kinetics , Magnetic Resonance Spectroscopy , Micelles , Models, Molecular , Phenylalanine/chemistry , Phosphatidylcholines/chemistry , Phosphatidylglycerols/chemistry , Protein Conformation , Protein Structure, Secondary , Thermodynamics
4.
Biochemistry ; 42(6): 1401-9, 2003 Feb 18.
Article in English | MEDLINE | ID: mdl-12578352

ABSTRACT

To further investigate the effect of single amino acid substitution on the structure and function of the gramicidin channel, an analogue of gramicidin A (GA) has been synthesized in which Trp(15) is replaced by Gly in the critical aqueous interface and cation binding region. The structure of Gly(15)-GA incorporated into SDS micelles has been determined using a combination of 2D-NMR spectroscopy and molecular modeling. Like the parent GA, Gly(15)-GA forms a dimeric channel composed of two single-stranded, right-handed beta(6.3)-helices joined by hydrogen bonds between their N-termini. The replacement of Trp(15) by Gly does not have a significant effect on backbone structure or side chain conformations with the exception of Trp(11) in which the indole ring is rotated away from the channel axis. Measurement of the equilibrium binding constants and Delta G for the binding of monovalent cations to GA and Gly(15)-GA channels incorporated into PC vesicles using (205)Tl NMR spectroscopy shows that monovalent cations bind much more weakly to the Gly(15)-GA channel entrance than to GA channels. Utilizing the magnetization inversion transfer NMR technique, the transport of Na(+) ions through GA and Gly(15)-GA channels incorporated into PC/PG vesicles has been investigated. The Gly(15) substitution produces an increase in the activation enthalpy of transport and thus a significant decrease in the transport rate of the Na(+) ion is observed. The single-channel appearances show that the conducting channels have a single, well-defined structure. Consistent with the NMR results, the single-channel conductances are reduced by 30% and the lifetimes by 70%. It is concluded that the decrease in cation binding, transport, and conductance in Gly(15)-GA results from the removal of the Trp(15) dipole and, to a lesser extent, the change in orientation of Trp(11).


Subject(s)
Glycine/chemistry , Gramicidin/chemistry , Lipid Bilayers/chemistry , Micelles , Phosphatidylcholines/chemistry , Phosphatidylglycerols/chemistry , Amino Acid Sequence , Binding Sites , Biological Transport/physiology , Cations, Monovalent/chemistry , Glycine/physiology , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Patch-Clamp Techniques , Sodium Dodecyl Sulfate/chemistry , Structure-Activity Relationship , Thallium , Thermodynamics
6.
Alaska Med ; 39(3): 67-71, 1997.
Article in English | MEDLINE | ID: mdl-9368422

ABSTRACT

In cross-cultural mental health, there is a need to understand the culture from which a person belongs before psychotherapy can be effective. The Yupik (Siberian) Eskimos of the St. Lawrence Island area have several historical traumas that have effected their cultural group. This paper addresses some of the important factors that have formed personality features of the Yupik. Discussion centers on the mental health factors inherent in the cultural shift and historical traumas that have occurred from the 1800s to the present, including traditional livelihood, family role patterns, and education. This particular cultural shift is one of traditional independence to European dependence.


Subject(s)
Cultural Characteristics , Inuit/psychology , Mental Health , Alaska , Family Relations/ethnology , Female , Humans , Male
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