ABSTRACT
Determination of food freshness, which is the most ancient role of the human sense of smell, is still a challenge for compact and inexpensive electronic nose devices. Fast, sensitive, and reusable sensors are long-awaited in the food industry to replace slow, labor-intensive, and expensive bacteriological methods. In this work, we present microbiological verification of a novel approach to food quality monitoring and spoilage detection using an electronic nose based on organic field-effect transistors (OFETs) and its application for distinguishing products. The compact device presented is able to detect spoilage-related gases as early as at the 4 × 104 CFU g-1 bacteria count level, which is 2 orders of magnitude below the safe consumption threshold. Cross-selective sensor array based on OFETs with metalloporphyrin receptors were made on a single substrate using solution processing leading to a low production cost. Moreover, machine learning methods applied to the sensor array response allowed us to compare spoilage profiles and separate them by the type of food: pork, chicken, fish, or milk. The approach presented can be used to monitor food spoilage and distinguish different products with an affordable and portable device.
ABSTRACT
Gain and loss of DNA methylation in cells is a dynamic process that tends to achieve an equilibrium. Many factors are involved in maintaining the balance between DNA methylation and demethylation. Previously, it was shown that methyl-DNA protein Kaiso may attract NCoR, SMRT repressive complexes affecting histone modifications. On the other hand, the deficiency of Kaiso resulted in reduced methylation of ICR in H19/Igf2 locus and Oct4 promoter in mouse embryonic fibroblasts. However, nothing is known about how Kaiso influences DNA methylation at the genome level. Here we show that deficiency of Kaiso led to whole-genome hypermethylation, using Kaiso deficient human renal cancer cell line obtained via CRISPR/CAS9 genome editing. However, Kaiso serves to protect genic regions, enhancers, and regions with a low level of histone modifications from demethylation. We detected hypomethylation of binding sites for Oct4 and Nanog in Kaiso deficient cells. Kaiso immunoprecipitated with de novo DNA methyltransferases DNMT3a/3b, but not with maintenance methyltransferase DNMT1. Thus, Kaiso may attract methyltransferases to surrounding regions and modulate genome methylation in renal cancer cells apart from being methyl DNA binding protein.