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1.
Ann Surg Oncol ; 30(3): 1678-1686, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36371582

ABSTRACT

BACKGROUND: Little information is available about the clinical and pathologic characteristics of local recurrence (LR) after nipple-sparing mastectomy according to the locations of LR. METHODS: This study classified 99 patients into the following two groups according to the location of LR after nipple-sparing mastectomy: nipple-areolar recurrence (NAR) group and other locations of LR (oLR) group. The study evaluated whether the location of LR was associated with disease-free survival (DFS) after LR resection. RESULTS: For about half of the patients (44.4 %) with NAR, the primary cancer was estrogen receptor (ER)-negative and human epidermal growth factor receptor 2 (HER2)-positive. Conversely, in most of the patients with oLR (79.2 %), the primary cancer was ER-positive and HER2-negative. Among the LR tumors, the frequency of noninvasive carcinoma in the NAR tumors was significantly higher than in the oLR tumors (51.9 % vs 4.2 %, respectively). During a median follow-up period of 46 months, the location of LR was not associated with DFS after LR. In the NAR group, the presence or absence of LR tumor invasiveness was the only factor associated with DFS. In the oLR group, age at primary surgery was the only factor associated with DFS. CONCLUSION: This multi-institutional retrospective study demonstrated that the features of NAR, such as the characteristics of the primary and recurrent tumors and the prognostic factors after LR resection, were quite different from those of oLR.


Subject(s)
Breast Neoplasms , Mammaplasty , Mastectomy, Subcutaneous , Humans , Female , Breast Neoplasms/pathology , Mastectomy , Nipples/surgery , Nipples/pathology , Retrospective Studies , Neoplasm Recurrence, Local/surgery , Neoplasm Recurrence, Local/pathology
2.
Int J Mol Sci ; 21(7)2020 Apr 02.
Article in English | MEDLINE | ID: mdl-32252468

ABSTRACT

Jabara (Citrus jabara Hort. ex Y. Tanaka) is a type of citrus fruit known for its beneficial effect against seasonal allergies. Jabara is rich in the antioxidant narirutin whose anti-allergy effect has been demonstrated. One of the disadvantages in consuming Jabara is its bitter flavor. Therefore, we fermented the fruit to reduce the bitterness and make Jabara easy to consume. Here, we examined whether fermentation alters the anti-allergic property of Jabara. Suppression of degranulation and cytokine production was observed in mast cells treated with fermented Jabara and the effect was dependent on the length of fermentation. We also showed that 5-hydroxymethylfurfural (5-HMF) increases as fermentation progresses and was identified as an active component of fermented Jabara, which inhibited mast cell degranulation. Mast cells treated with 5-HMF also exhibited reduced degranulation and cytokine production. In addition, we showed that the expression levels of phospho-PLCγ1 and phospho-ERK1/2 were markedly reduced upon FcεRI stimulation. These results indicate that 5-HMF is one of the active components of fermented Jabara that is involved in the inhibition of mast cell activation.


Subject(s)
Citrus/chemistry , Furaldehyde/analogs & derivatives , Mast Cells/drug effects , Mast Cells/physiology , Plant Extracts/pharmacology , Receptors, IgE/metabolism , Cell Degranulation/drug effects , Cell Degranulation/immunology , Cytokines/genetics , Cytokines/metabolism , Fermentation , Fermented Foods , Furaldehyde/chemistry , Furaldehyde/pharmacology , Immunoglobulin E/immunology , Inflammation Mediators/metabolism , Plant Extracts/chemistry
3.
Biosci Microbiota Food Health ; 35(3): 137-40, 2016.
Article in English | MEDLINE | ID: mdl-27508115

ABSTRACT

Oxidative stress is considered an etiological factor responsible for several symptoms of inflammatory bowel disease (IBD). In vitro anti-inflammatory activities of heat-killed Lactococcus lactis subsp. lactis BF3 have been reported. In this study, the anti-inflammatory effect of these cells was examined using a dextran sodium sulphate (DSS)-induced murine IBD model. Administration of heat-killed L. lactis BF3 via drinking water suppressed the IBD symptoms, such as shortening of colon length, damage to the colon mucosa as observed under the microscope, and spleen enlargement. This result suggests that heat-killed L. lactis BF3 has the potential to treat IBD.

4.
J Biol Chem ; 290(20): 12753-64, 2015 May 15.
Article in English | MEDLINE | ID: mdl-25825491

ABSTRACT

Attenuated nutrient signaling extends the life span in yeast and higher eukaryotes; however, the mechanisms are not completely understood. Here we identify the Ssy1-Ptr3-Ssy5 (SPS) amino acid sensing pathway as a novel longevity factor. A null mutation of SSY5 (ssy5Δ) increases replicative life span (RLS) by ∼50%. Our results demonstrate that several NAD(+) homeostasis factors play key roles in this life span extension. First, expression of the putative malate-pyruvate NADH shuttle increases in ssy5Δ cells, and deleting components of this shuttle, MAE1 and OAC1, largely abolishes RLS extension. Next, we show that Stp1, a transcription factor of the SPS pathway, directly binds to the promoter of MAE1 and OAC1 to regulate their expression. Additionally, deletion of SSY5 increases nicotinamide riboside (NR) levels and phosphate-responsive (PHO) signaling activity, suggesting that ssy5Δ increases NR salvaging. This increase contributes to NAD(+) homeostasis, partially ameliorating the NAD(+) deficiency and rescuing the short life span of the npt1Δ mutant. Moreover, we observed that vacuolar phosphatase, Pho8, is partially required for ssy5Δ-mediated NR increase and RLS extension. Together, our studies present evidence that supports SPS signaling is a novel NAD(+) homeostasis factor and ssy5Δ-mediated life span extension is likely due to concomitantly increased mitochondrial and vacuolar function. Our findings may contribute to understanding the molecular basis of NAD(+) metabolism, cellular life span, and diseases associated with NAD(+) deficiency and aging.


Subject(s)
Carrier Proteins/metabolism , Homeostasis/physiology , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , NAD/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Serine Proteases/metabolism , Signal Transduction/physiology , Alkaline Phosphatase/genetics , Alkaline Phosphatase/metabolism , Carrier Proteins/genetics , Gene Deletion , Gene Expression Regulation, Fungal/physiology , Intracellular Signaling Peptides and Proteins/genetics , Malate Dehydrogenase/genetics , Malate Dehydrogenase/metabolism , Membrane Proteins/genetics , NAD/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Serine Proteases/genetics , Vacuoles/genetics , Vacuoles/metabolism
5.
DNA Repair (Amst) ; 23: 49-58, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25096760

ABSTRACT

Pyridine nucleotides are essential coenzymes in many cellular redox reactions in all living systems. In addition to functioning as a redox carrier, NAD(+) is also a required co-substrate for the conserved sirtuin deacetylases. Sirtuins regulate transcription, genome maintenance and metabolism and function as molecular links between cells and their environment. Maintaining NAD(+) homeostasis is essential for proper cellular function and aberrant NAD(+) metabolism has been implicated in a number of metabolic- and age-associated diseases. Recently, NAD(+) metabolism has been linked to the phosphate-responsive signaling pathway (PHO pathway) in the budding yeast Saccharomyces cerevisiae. Activation of the PHO pathway is associated with the production and mobilization of the NAD(+) metabolite nicotinamide riboside (NR), which is mediated in part by PHO-regulated nucleotidases. Cross-regulation between NAD(+) metabolism and the PHO pathway has also been reported; however, detailed mechanisms remain to be elucidated. The PHO pathway also appears to modulate the activities of common downstream effectors of multiple nutrient-sensing pathways (Ras-PKA, TOR, Sch9/AKT). These signaling pathways were suggested to play a role in calorie restriction-mediated beneficial effects, which have also been linked to Sir2 function and NAD(+) metabolism. Here, we discuss the interactions of these pathways and their potential roles in regulating NAD(+) metabolism. In eukaryotic cells, intracellular compartmentalization facilitates the regulation of enzymatic functions and also concentrates or sequesters specific metabolites. Various NAD(+)-mediated cellular functions such as mitochondrial oxidative phosphorylation are compartmentalized. Therefore, we also discuss several key players functioning in mitochondrial, cytosolic and vacuolar compartmentalization of NAD(+) intermediates, and their potential roles in NAD(+) homeostasis. To date, it remains unclear how NAD(+) and NAD(+) intermediates shuttle between different cellular compartments. Together, these studies provide a molecular basis for how NAD(+) homeostasis factors and the interacting signaling pathways confer metabolic flexibility and contribute to maintaining cell fitness and genome stability.


Subject(s)
NAD/metabolism , Saccharomyces cerevisiae/metabolism , Cell Compartmentation , Cytosol/metabolism , Metabolic Networks and Pathways , Mitochondria/metabolism , NAD/biosynthesis , Nicotinamidase/metabolism , Phosphates/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/metabolism , Signal Transduction , Silent Information Regulator Proteins, Saccharomyces cerevisiae/metabolism , Sirtuin 2/metabolism , Vacuoles/metabolism
6.
J Biol Chem ; 289(22): 15577-87, 2014 May 30.
Article in English | MEDLINE | ID: mdl-24759102

ABSTRACT

NAD(+) is an essential metabolic cofactor involved in various cellular biochemical processes. Nicotinamide riboside (NR) is an endogenously produced key pyridine metabolite that plays important roles in the maintenance of NAD(+) pool. Using a NR-specific cell-based screen, we identified mutants that exhibit altered NR release phenotype. Yeast cells lacking the ORF YCL047C/POF1 release considerably more NR compared with wild type, suggesting that POF1 plays an important role in NR/NAD(+) metabolism. The amino acid sequence of Pof1 indicates that it is a putative nicotinamide mononucleotide adenylyltransferase (NMNAT). Unlike other yeast NMNATs, Pof1 exhibits NMN-specific adenylyltransferase activity. Deletion of POF1 significantly lowers NAD(+) levels and decreases the efficiency of NR utilization, resistance to oxidative stress, and NR-induced life span extension. We also show that NR is constantly produced by multiple nucleotidases and that the intracellular NR pools are likely to be compartmentalized, which contributes to the regulation of NAD(+) homeostasis. Our findings may contribute to the understanding of the molecular basis and regulation of NAD(+) metabolism in higher eukaryotes.


Subject(s)
NAD/biosynthesis , Nicotinamide-Nucleotide Adenylyltransferase/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Amino Acid Sequence , Homeostasis/physiology , Molecular Sequence Data , Niacinamide/analogs & derivatives , Niacinamide/metabolism , Nicotinamide-Nucleotide Adenylyltransferase/genetics , Pyridinium Compounds , Saccharomyces cerevisiae Proteins/genetics
7.
J Clin Biochem Nutr ; 53(1): 41-8, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23874069

ABSTRACT

S-equol is a natural metabolite of the soy isoflavone, daidzein, produced by intestinal bacteria. S-equol has been shown to have greater estrogenic activity than other soy isoflavones and prevent bone loss in post-menopausal women. Estrogen regulates both bone remodeling and hemopoiesis in the bone marrow, these processes that communicate closely with each other. In this study, we investigated the effect of S-equol on bone mass and gene expression of bone marrow cells in ovariectomized (OVX) mice. Female ddY strain mice, aged 12 weeks, were either sham operated or OVX. The OVX mice were randomly divided into two groups: (1) OVX control and (2) OVX fed a 0.06% (w/w) S-equol supplemented diet. After 2 weeks, the trabecular bone volume of the femoral distal metaphysis was markedly reduced in OVX mice. However, treatment with equol was observed to ameliorate this. Expression of inflammatory-, osteoclastogenesis- and adipogenesis-related genes was increased in OVX mice compared with sham mice, and equol was observed to suppress their expression. The present study demonstrates that equol might ameliorate bone loss caused by estrogen deficiency through regulating hemopoiesis and production of inflammatory cytokines in bone marrow cells.

8.
J Aging Res ; 2011: 673185, 2011 Mar 31.
Article in English | MEDLINE | ID: mdl-21584246

ABSTRACT

Calorie restriction (CR) induces a metabolic shift towards mitochondrial respiration; however, molecular mechanisms underlying CR remain unclear. Recent studies suggest that CR-induced mitochondrial activity is associated with nitric oxide (NO) production. To understand the role of mitochondria in CR, we identify and study Saccharomyces cerevisiae mutants with increased NO levels as potential CR mimics. Analysis of the top 17 mutants demonstrates a correlation between increased NO, mitochondrial respiration, and longevity. Interestingly, treating yeast with NO donors such as GSNO (S-nitrosoglutathione) is sufficient to partially mimic CR to extend lifespan. CR-increased NO is largely dependent on mitochondrial electron transport and cytochrome c oxidase (COX). Although COX normally produces NO under hypoxic conditions, CR-treated yeast cells are able to produce NO under normoxic conditions. Our results suggest that CR may derepress some hypoxic genes for mitochondrial proteins that function to promote the production of NO and the extension of lifespan.

9.
Int J Prosthodont ; 23(3): 243-5, 2010.
Article in English | MEDLINE | ID: mdl-20552090

ABSTRACT

This study aimed to investigate the occurrence of subpontic tissue enlargement (STE) beneath a mandibular fixed partial denture. A 55-year-old Japanese woman received periodontal therapy and cross-arch fixed partial dentures were placed in the maxilla and mandible. After 18 years, STE developed in the left posterior region of the mandible. It was presumed that biomechanical loading in the mandible, along with other factors, might have caused the STE in this particular patient.


Subject(s)
Denture Design , Denture, Partial, Fixed , Hyperostosis/diagnosis , Mandibular Diseases/diagnosis , Alveolar Process/pathology , Dental Abutments , Female , Gingiva/pathology , Humans , Hyperostosis/pathology , Mandibular Diseases/pathology , Middle Aged
10.
Clin Implant Dent Relat Res ; 12(1): 48-54, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19076182

ABSTRACT

BACKGROUND: Orthodontic forces for tooth intrusion ought to be continuous and low, which may be achieved with the help of osseointegrated implants. PURPOSE: The aims of this study were to describe a method to intrude supererupted maxillary molars using interarch intrusion mechanics (a bite plane appliance) with implants and to assess anchor implant stability through resonance frequency analysis (RFA; Osstell, Mentor version 2, Integration Diagnostics AB, Göteborg, Sweden) in comparison with nonanchorage control implants during orthodontic intrusion. MATERIALS AND METHODS: A 48-year-old female patient was treated with implants (36 and 37 regions, Brånemark Implant System, MkIII TiUNite, Nobel Biocare AB, Göteborg, Sweden; lengths, 13 and 10 mm; diameter, 5 mm) serving as orthodontic anchorage for intrusion of supraerupted teeth in the maxilla (teeth 26 and 27) using a bite plane appliance. The force of intrusion applied was individual discontinuous bite force in the present case. The control implants were in the sites 45, 46, and 47 with healing abutments out of loading. Stability of both the anchorage and control implants was assessed by RFA from the commencement of orthodontic intrusion (7 months after the first-stage surgery) to the end of the study (19 months after the first-stage surgery). Marginal bone height measurements of both implants were performed on radiographs at the same time. RESULTS: The treatment was completed without complications or abnormalities of the intruded teeth or the opposite anchorage implants. However, implant stability quotient values of the anchored implants obviously changed during the initial 4 months after commencement of intrusion compared with control implants. In the present case, an intrusion of 2.2 mm was achieved in 12 months. CONCLUSIONS: The present method made it possible to intrude molars successfully. However, further studies with more cases are needed to clarify the reliability of the method and determine how to control the bite forces applied as orthodontic load.


Subject(s)
Dental Implants , Molar/pathology , Occlusal Splints , Orthodontic Anchorage Procedures/instrumentation , Orthodontic Appliance Design , Tooth Movement Techniques/instrumentation , Bite Force , Dental Abutments , Dental Prosthesis Design , Denture, Partial, Temporary , Female , Follow-Up Studies , Humans , Jaw, Edentulous, Partially/rehabilitation , Jaw, Edentulous, Partially/surgery , Malocclusion/therapy , Maxilla/diagnostic imaging , Middle Aged , Osseointegration/physiology , Radiography , Stress, Mechanical , Tooth Movement Techniques/methods
11.
J Occup Health ; 51(4): 303-13, 2009.
Article in English | MEDLINE | ID: mdl-19483368

ABSTRACT

OBJECTIVES: The aims of this study of Japanese married employees were: 1) to examine the relationship between work-related factors and work-to-family conflict (WFC); 2) to examine the relationship between WFC and fatigue and depression; and 3) to explore the role of family togetherness in a path between WFC and health. METHODS: A cross-sectional survey was conducted among employees belonging to a labor union federation of the chemical industry. All analyses were conducted by subgroup according to gender and parental status. RESULTS: Data was collected from 12 companies located in the Tokyo metropolitan area from September to October 2005. The data of 961 married employees were analyzed. The main findings by regression analyses were: 1) high job demands, low job control, and unsupportive work-family culture were associated with high level of WFC; 2) WFC was positively associated with fatigue and depression regardless of gender and parental status; and 3) maintaining family togetherness was slightly, yet significantly associated with fatigue in the father group. CONCLUSIONS: WFC was unfavorably related to fatigue and depression in both genders regardless of parental status, and plays a role linking unfavorable work situations and health. As possible work-related factors of WFC, the data indicate not only individual workplace variables but also an organizational support. Additionally, maintaining family togetherness appears to benefit fathers by preventing fatigue. Strategies for reduction of WFC are therefore necessary to promote health among married workers of both genders.


Subject(s)
Employment/psychology , Family Conflict/psychology , Adult , Cross-Sectional Studies , Depression , Fatigue , Female , Humans , Industry , Japan , Male , Nuclear Family
12.
J Biol Chem ; 284(25): 17110-17119, 2009 Jun 19.
Article in English | MEDLINE | ID: mdl-19416965

ABSTRACT

NAD(+) (nicotinamide adenine dinucleotide) is an essential cofactor involved in various biological processes including calorie restriction-mediated life span extension. Administration of nicotinamide riboside (NmR) has been shown to ameliorate deficiencies related to aberrant NAD(+) metabolism in both yeast and mammalian cells. However, the biological role of endogenous NmR remains unclear. Here we demonstrate that salvaging endogenous NmR is an integral part of NAD(+) metabolism. A balanced NmR salvage cycle is essential for calorie restriction-induced life span extension and stress resistance in yeast. Our results also suggest that partitioning of the pyridine nucleotide flux between the classical salvage cycle and the NmR salvage branch might be modulated by the NAD(+)-dependent Sir2 deacetylase. Furthermore, two novel deamidation steps leading to nicotinic acid mononucleotide and nicotinic acid riboside production are also uncovered that further underscore the complexity and flexibility of NAD(+) metabolism. In addition, utilization of extracellular nicotinamide mononucleotide requires prior conversion to NmR mediated by a periplasmic phosphatase Pho5. Conversion to NmR may thus represent a strategy for the transport and assimilation of large nonpermeable NAD(+) precursors. Together, our studies provide a molecular basis for how NAD(+) homeostasis factors confer metabolic flexibility.


Subject(s)
Niacinamide/analogs & derivatives , Saccharomyces cerevisiae/metabolism , Animals , Caloric Restriction , Genes, Fungal , Histone Deacetylases/metabolism , Hot Temperature/adverse effects , Longevity/physiology , Mammals , Models, Biological , Mutation , N-Glycosyl Hydrolases/genetics , N-Glycosyl Hydrolases/metabolism , NAD/metabolism , Niacinamide/metabolism , Pentosyltransferases/genetics , Pentosyltransferases/metabolism , Pyridinium Compounds , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Silent Information Regulator Proteins, Saccharomyces cerevisiae/metabolism , Sirtuin 2 , Sirtuins/metabolism , Stress, Physiological , Time Factors
13.
Yeast ; 26(7): 363-9, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19399913

ABSTRACT

Nicotinamide adenine dinucleotide (NAD+) is synthesized via two major pathways in prokaryotic and eukaryotic systems: the de novo biosynthesis pathway from tryptophan precursors, or the salvage biosynthesis pathway from either extracellular nicotinic acid or various intracellular NAD+ decomposition products. NAD+ biosynthesis via the salvage pathway has been linked to an increase in yeast replicative lifespan under calorie restriction (CR). However, the relative contribution of each pathway to NAD+ biosynthesis under both normal and CR conditions is not known. Here, we have performed lifespan, NAD+ and NADH (the reduced form of NAD+) analyses on BY4742 wild-type, NAD+ salvage pathway knockout (npt1Delta) and NAD+ de novo pathway knockout (qpt1Delta) yeast strains cultured in media containing either 2% glucose (normal growth) or 0.5% glucose (CR). We have utilized 14C labelled nicotinic acid in the culture media combined with HPLC speciation and both UV and 14C detection to quantitate the total amounts of NAD+ and NADH and the amounts derived from the salvage pathway. We observed that wild-type and qpt1Delta yeast exclusively utilized extracellular nicotinic acid for NAD+ and NADH biosynthesis under both the 2% and 0.5% glucose growth conditions, suggesting that the de novo pathway plays little role if a functional salvage pathway is present. We also observed that NAD+ concentrations decreased in all three strains under CR. However, unlike the wild-type strain, NADH concentrations did not decrease and NAD+: NADH ratios did not increase under CR for either knockout strain. Lifespan analyses revealed that CR resulted in a lifespan increase of approximately 25% for the wild-type and qpt1Delta strains, while no increase in lifespan was observed for the npt1Delta strain. In combination, these data suggest that having a functional salvage pathway is required for lifespan extension under CR.


Subject(s)
Metabolic Networks and Pathways , NAD/biosynthesis , Saccharomyces cerevisiae/metabolism , Carbon Radioisotopes/metabolism , Chromatography, High Pressure Liquid , Culture Media/chemistry , Gene Deletion , Genes, Fungal , Glucose/metabolism , Niacin/metabolism , Pentosyltransferases/deficiency , Radiometry , Spectrum Analysis
14.
Nat Cell Biol ; 11(2): 123-32, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19136968

ABSTRACT

Nuclear factor-kappaB (NF-kappaB) is a key transcription factor in inflammatory, anti-apoptotic and immune processes. The ubiquitin pathway is crucial in regulating the NF-kappaB pathway. We have found that the LUBAC ligase complex, composed of the two RING finger proteins HOIL-1L and HOIP, conjugates a head-to-tail-linked linear polyubiquitin chain to substrates. Here, we demonstrate that LUBAC activates the canonical NF-kappaB pathway by binding to NEMO (NF-kappaB essential modulator, also called IKKgamma) and conjugates linear polyubiquitin chains onto specific Lys residues in the CC2-LZ domain of NEMO in a Ubc13-independent manner. Moreover, in HOIL-1 knockout mice and cells derived from these mice, NF-kappaB signalling induced by pro-inflammatory cytokines such as TNF-alpha and IL-1beta was suppressed, resulting in enhanced TNF-alpha-induced apoptosis in hepatocytes of HOIL-1 knockout mice. These results indicate that LUBAC is involved in the physiological regulation of the canonical NF-kappaB activation pathway through linear polyubiquitylation of NEMO.


Subject(s)
Carrier Proteins/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , NF-kappa B/metabolism , Ubiquitin-Protein Ligases/metabolism , Ubiquitin/metabolism , Ubiquitination , Animals , Apoptosis/drug effects , Apoptosis/physiology , Carrier Proteins/genetics , Cell Line , Chimera , Cytokines/metabolism , Cytokines/pharmacology , Intracellular Signaling Peptides and Proteins/genetics , Macromolecular Substances/metabolism , Mice , Mice, Inbred C57BL , Mice, Inbred ICR , Mice, Knockout , Molecular Structure , NF-kappa B/genetics , Polymers/metabolism , RING Finger Domains/genetics , Ubiquitin/genetics , Ubiquitin-Conjugating Enzymes/genetics , Ubiquitin-Conjugating Enzymes/metabolism , Ubiquitin-Protein Ligases/genetics , Ubiquitination/genetics
15.
Genome Res ; 18(9): 1484-99, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18599681

ABSTRACT

Mobile DNA elements play a major role in genome plasticity and other evolutionary processes, an insight gained primarily through the study of transposons and retrotransposons (generally approximately 1000 nt or longer). These elements spawn smaller parasitic versions (generally >100 nt) that propagate through proteins encoded by the full elements. Highly repeated sequences smaller than 100 nt have been described, but they are either nonmobile or their origins are not known. We have surveyed the genome of the multicellular cyanobacterium, Nostoc punctiforme, and its relatives for small dispersed repeat (SDR) sequences and have identified eight families in the range of from 21 to 27 nucleotides. Three of the families (SDR4, SDR5, and SDR6), despite little sequence similarity, share a common predicted secondary structure, a conclusion supported by patterns of compensatory mutations. The SDR elements are found in a diverse set of contexts, often embedded within tandemly repeated heptameric sequences or within minitransposons. One element (SDR5) is found exclusively within instances of an octamer, HIP1, that is highly over-represented in the genomes of many cyanobacteria. Two elements (SDR1 and SDR4) often are found within copies of themselves, producing complex nested insertions. An analysis of SDR elements within cyanobacterial genomes indicate that they are essentially confined to a coherent subgroup. The evidence indicates that some of the SDR elements, probably working through RNA intermediates, have been mobile in recent evolutionary time, making them perhaps the smallest known mobile elements.


Subject(s)
Cyanobacteria/genetics , Genome, Bacterial , Interspersed Repetitive Sequences/genetics , Bacterial Proteins/genetics , Base Sequence , Models, Biological , Molecular Sequence Data , Mutation , Nested Genes , Nucleic Acid Conformation , Phylogeny
16.
J Biol Chem ; 283(24): 16622-31, 2008 Jun 13.
Article in English | MEDLINE | ID: mdl-18424433

ABSTRACT

Oxygen-dependent ubiquitination of the alpha-subunit of hypoxia-inducible factor (HIF-alpha) by the (von Hippel-Lindau protein)-Elongin B/C-Cullin2-Rbx1 (VBC-Cul2) ubiquitin ligase, a member of the cullin-RING ubiquitin ligases (CRLs), plays a central role in controlling oxygen metabolism. Nedd8 conjugation of cullins enhances the ligase activity of CRLs, and the COP9/signalosome (CSN) enhances the degradation of several CRL substrates, although it removes Nedd8 from cullins. Here we demonstrate that CSN increased the efficiency of the VBC-Cul2 complex for recognizing and ubiquitinating substrates by facilitating the dissociation of ubiquitinated substrates from the pVHL subunit of the complex. Moreover CSN enhanced HIF-1alpha degradation by promoting the dissociation of HIF-1alpha from pVHL in cells. The length of the polyubiquitin chain conjugated to the substrate appeared to be involved in CSN-mediated dissociation of the substrate from pVHL. In contrast to other mechanisms underlying CSN-mediated activation of CRLs, the dissociation of ubiquitinated substrates from pVHL did not require the deneddylation activity of CSN, implying that CSN enhances degradation of CRL substrates by multiple mechanisms.


Subject(s)
Gene Expression Regulation , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Multiprotein Complexes/metabolism , Peptide Hydrolases/metabolism , Ubiquitin-Protein Ligases/metabolism , Von Hippel-Lindau Tumor Suppressor Protein/metabolism , COP9 Signalosome Complex , Cell Line, Tumor , HeLa Cells , Humans , Kinetics , Models, Biological , Mutation , Plasmids/metabolism , Protein Binding , RNA Interference , Ubiquitin/chemistry
17.
Appl Microbiol Biotechnol ; 75(6): 1353-60, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17401561

ABSTRACT

To search for the substrates, other than neurotensin, of rat brain neurolysin, a novel method of determining peptidase activity was developed using a yeast molecular display system. This is a useful and convenient method of handling homogenously pure proteins to evaluate the properties of neurolysin. The neurolysin gene was ligated to the C-terminal half of the alpha-agglutinin gene with a FLAG tag sequence and a yeast cell-surface molecular displaying plasmid was constructed. Display of neurolysin with correct folding and appropriate activity was verified by immunofluorescence staining and activity measurement of a bradykinin-related peptide. The cleavage sites of peptides were determined by high-performance liquid chromatography (HPLC) and matrix assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). The results showed the amino acid preferences of hydrophobic, aromatic, and basic residues, which were the same as those of soluble neurolysin. Moreover, this method clearly showed the presence of two recognition motifs in neurolysin. By using these motifs, novel substrate candidates of neurolysin in rat tissues were screened, and several bioactive peptides that regulate feeding were found. We also discussed the ubiquitous distribution of neurolysin in rat tissues and the functions of substrate candidate peptides.


Subject(s)
Brain/enzymology , Metalloendopeptidases/physiology , Animals , Cell Wall/enzymology , Metalloendopeptidases/genetics , Rats , Saccharomyces cerevisiae/genetics , Substrate Specificity/physiology
18.
Appl Microbiol Biotechnol ; 75(6): 1285-91, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17404728

ABSTRACT

To compare the substrate preferences of rat brain neurolysin and cancer-producing matrix metalloproteinases (MMPs), which have the same architecture in their catalytic domains, the cleavage activity of neurolysin toward MMP-specific fluorescence-quenching peptides was quantitatively measured. The results show that neurolysin effectively cleaved MOCAc [(7-methoxy coumarin-4-yl) acetyl]-RPKPYANvaWMK(Dnp[2,4-dinitrophenyl])-NH(2), a specific substrate of MMP-2 and MMP-9, but hardly cleaved MOCAc-RPKPVENvaWRK(Dnp)-NH(2), a specific substrate of MMP-3, suggesting that neurolysin has a similar substrate preference to MMP-2 and MMP-9. A structural comparison between neurolysin and MMP-9 showed the similar key amino acid residues for substrate recognition. The possible application of neurolysin displayed on the yeast cell surface, as a safe protein alternative to MMP-2 and MMP-9 which induce cancer cell growth, invasion, and metastasis, to analysis of properties of the MMPs, including the screening of inhibitors and analysis of inhibition mechanism etc., are also discussed.


Subject(s)
Matrix Metalloproteinase 2/physiology , Matrix Metalloproteinase 9/physiology , Metalloendopeptidases/physiology , Neoplasms/enzymology , Animals , Matrix Metalloproteinase 2/chemistry , Matrix Metalloproteinase 9/chemistry , Metalloendopeptidases/chemistry , Rats , Substrate Specificity
19.
Appl Microbiol Biotechnol ; 75(4): 821-8, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17345082

ABSTRACT

We determined whether the cocultivation of yeast cells displaying a ZZ-domain and secreting an Fc fusion protein can be a novel tool for the recovery of secreted recombinant proteins. The ZZ-domain from Staphylococcus aureus protein A was displayed on the cell surface of Saccharomyces cerevisiae under the control of the GAL1 promoter. Strain S. cerevisiae BY4742 cells displaying the ZZ-domain on their surface were used for cocultivation with cells that produce a target protein fused to the Fc fragment as an affinity tag. The enhanced green fluorescent protein or Rhizopus oryzae lipase was genetically fused to the N and C termini of the Fc fragment of human immunoglobulin G, respectively. Through analysis by fluorescence-activated cell sorting and enzymatic assay, it was demonstrated that these fusion proteins are successfully produced in the medium and recovered by affinity binding with the cell surface displaying the ZZ-domain. These results suggest that the ZZ-domain-displaying cell and Fc fusion protein-secreting cell can be applied to use in synergistic process of production and recovery of secreted recombinant proteins.


Subject(s)
Cell Membrane/metabolism , Protein Engineering/methods , Saccharomyces cerevisiae/metabolism , Staphylococcal Protein A/metabolism , Cell Membrane/genetics , Fungal Proteins/genetics , Fungal Proteins/isolation & purification , Fungal Proteins/metabolism , Gene Expression , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/isolation & purification , Green Fluorescent Proteins/metabolism , Humans , Immunoglobulin Fc Fragments/genetics , Immunoglobulin Fc Fragments/isolation & purification , Immunoglobulin Fc Fragments/metabolism , Lipase/genetics , Lipase/isolation & purification , Lipase/metabolism , Plasmids/genetics , Protein Structure, Tertiary , Protein Transport , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Rhizopus/enzymology , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/genetics , Staphylococcal Protein A/chemistry , Staphylococcal Protein A/genetics , Staphylococcal Protein A/isolation & purification
20.
Biosci Biotechnol Biochem ; 71(2): 472-80, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17317927

ABSTRACT

Carboxypeptidase Y (CPY) inhibitor (I(C)) and its homologous protein (I(C)h) are thought to be members of the phosphatidylethanolamine-binding protein (PEBP) family of Saccharomyces cerevisiae. The biochemical characterization of I(C) and its inhibition mode toward CPY were recently reported, but I(C)h has not been characterized. The molecular mass of I(C)h was determined to be 22,033.7. The N-terminal Met1 was cleaved and the amino group of Ser2 was acetylated. I(C)h is folded as a monomeric beta-protein and is devoid of disulfide bonds. It has no inhibitory activity toward CPY, and it does not form a complex with CPY. I(C)h was exclusively expressed in the early log phase, whereas I(C) was expressed in the logarithmic and stationary phase. The intracellular localization of I(C)h was different from that of I(C). These findings provide insights into the physiological functions of I(C)h.


Subject(s)
Carrier Proteins/genetics , Carrier Proteins/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Amino Acid Sequence , Blotting, Northern , Chromatography, Gel , Circular Dichroism , Intracellular Signaling Peptides and Proteins , Molecular Sequence Data , Molecular Weight , Protein Processing, Post-Translational , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Spectrophotometry, Ultraviolet , Sulfhydryl Reagents
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