Gut microbiomes of captive primates show phylosymbiosis, respond to dietary sugar reduction, and select for host-specific dietary microbes.

Host-associated microbiomes are influenced by evolutionary history and proximate factors such as diet and environment. Zoos house animals in relatively standardized and manipulatable environments, making zoo populations valuable for studying microbiomes. Using a small population of five, closely related primate species housed under nearly identical environments, we investigated gut microbiome variation regarding (a) congruence between host evolutionary history and gut bacterial composition (i.e. phylosymbiosis), (b) a longitudinal reduction in dietary sugar intake, and (c) ingestion of bacteria from dietary sources. We found that the primate gut microbiomes varied across individuals and showed phylosymbiosis. When animals were fed diets with reduced sugar and increased fibre, we found host-specific changes in taxonomically distinct microbes (Phascolarctobacterium, Megasphaera, and Sharpea). Yet, these bacterial genera share similar functional potential (fibre degradation), indicating that the distinct bacterial communities may fulfill similar functions. Although all individuals received the same diet, the diet-associated bacteria in primate gut microbiomes were distinct across individuals of different species, suggesting a mechanism that selects for unique dietary microbes to persist in animal guts. Our findings show that the microbiomes of a small, captive primate population housed under uniform environmental conditions still show patterns congruent with combined influences of evolutionary history and diet.

Fecal microbiota transplants modulate the gut microbiome of a two-toed sloth (Choloepus didactylus).

The microbes inhabiting an animal's gastrointestinal tracts, collectively known as the gut microbiome, are vital to animal health and wellbeing. For animals experiencing gut distress or infection, modulation of the gut microbiome, for example, via fecal microbiota transplant (FMT), provides a possible disease prevention and treatment method. The beneficial microbes present in the donor's transplanted feces can help combat pathogens, assist in digestion, and rebalance the recipient's microbiota. Investigating the efficacy of FMTs in animal health is a crucial step toward improving management strategies for species under human care. We present a case study of the use of FMTs in a two-toed sloth experiencing abnormally large, clumped, and frequent stools. We used 16 S rRNA amplicon sequencing of fecal samples to (a) compare the microbiomes of the FMT donor, a healthy, cohoused conspecific, and the FMT recipient and (b) assess the influence of multiple rounds of FMTs on the recipient's microbiome and stool consistency and frequency over time. In response to the FMTs, we found that the recipient's microbiome showed trends toward increased diversity, shifted community composition, and altered membership that more resembled the community of the donor. FMT treatment was also associated with marked, yet temporary, alleviation of the recipient's abnormal bowel movements, suggesting a broader impact on gut health. Our results provide valuable preliminary evidence that FMT treatments can augment the recipient's gut microbiome, with potential implications for animal health and management.

Husbandry of wild-caught song sparrows (Melospiza melodia).

Conservation and research efforts occasionally rely upon bringing wild animals into human care to establish breeding programs and to understand their biology. Wild-caught birds may have husbandry requirements that differ from captive-reared animals due, in part, to their social development in the wild and potential exposure to novel pathogens. We developed husbandry techniques to minimize stress and monitor health in a population of wild-caught song sparrows (Melospiza melodia). We describe enclosure conditions, diet and enrichment, and best practices for stress reduction. In addition, we describe several health monitoring strategies, including assessing feces quality, body condition scores, and specific signs of infection. These techniques led to successful housing of song sparrows during formal behavioral and developmental studies. This information will be useful for guiding the husbandry of wild-caught passerine birds in the future.

Diet manipulation as treatment for elevated serum iron parameters in captive raggiana bird of paradise (Paradisaea raggiana).

Elevated serum iron parameters were lowered through dietary manipulation in captive Raggiana bird of paradise (Paradisaea raggiana). Study birds were part of a captive breeding program consisting of two males and one female, captive born, 3.5-9 yr of age. Serum iron, total iron binding capacity (TIBC), percentage saturation, body weight, albumin, aspartate aminotransferase, and hematocrit were monitored at regular intervals for 2.5 yr. Routine diet consisted of a variety of fruits, vegetables, a multivitamin supplement, and a commercial low iron avian pellet, with a dietary iron content of 55 mg/kg (dry matter basis) or 1.12 mg iron/bird/day. Dietary treatment involved removal of the commercial avian pellet for 30 days at 6-to 12-mo intervals, resulting in an iron content of 42 mg/kg (dry matter basis) or 0.64 mg iron/bird/day. Average serum iron and TIBC were decreased by 75% (TIBC) to 80% (serum iron) ofpretreatment values after one 30-day treatment. Average iron saturation levels were lowered by 10% of pretreatment values after one 30-day treatment. Average hematocrit, albumin, aspartate aminotransferase, and body weight remained unchanged. No adverse effects were noted through the 2.5-yr evaluation period, and breeding behavior was undisturbed. Periodic removal of low iron commercial pellets in the diet of captive bird of paradise is a safe and effective method for lowering serum iron values without need for handling. Periodic application of this technique may be useful as a preventive tool to maintain appropriate serum iron values in avian species susceptible to iron storage disease.