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1.
Front Immunol ; 8: 163, 2017.
Article in English | MEDLINE | ID: mdl-28261219

ABSTRACT

A vaccine to eliminate malaria would need a multi-stage and multi-species composition to achieve robust protection, but the lack of knowledge about antigen targets and mechanisms of protection precludes the development of fully efficacious malaria vaccines, especially for Plasmodium vivax (Pv). Pregnant women constitute a risk population who would greatly benefit from a vaccine preventing the adverse events of Plasmodium infection during gestation. We hypothesized that functional immune responses against putative targets of naturally acquired immunity to malaria and vaccine candidates will be associated with protection against malaria infection and/or poor outcomes during pregnancy. We measured (i) IgG responses to a large panel of Pv and Plasmodium falciparum (Pf) antigens, (ii) the capacity of anti-Pv ligand Duffy binding protein (PvDBP) antibodies to inhibit binding to Duffy antigen, and (iii) cellular immune responses to two Pv antigens, in a subset of 1,056 pregnant women from Brazil, Colombia, Guatemala, India, and Papua New Guinea (PNG). There were significant intraspecies and interspecies correlations for most antibody responses (e.g., PfMSP119 versus PfAMA1, Spearman's rho = 0.81). Women from PNG and Colombia had the highest levels of IgG overall. Submicroscopic infections seemed sufficient to boost antibody responses in Guatemala but not antigen-specific cellular responses in PNG. Brazil had the highest percentage of Duffy binding inhibition (p-values versus Colombia: 0.040; Guatemala: 0.047; India: 0.003, and PNG: 0.153) despite having low anti-PvDBP IgG levels. Almost all antibodies had a positive association with present infection, and coinfection with the other species increased this association. Anti-PvDBP, anti-PfMSP1, and anti-PfAMA1 IgG levels at recruitment were positively associated with infection at delivery (p-values: 0.010, 0.003, and 0.023, respectively), suggesting that they are markers of malaria exposure. Peripheral blood mononuclear cells from Pv-infected women presented fewer CD8+IFN-γ+ T cells and secreted more G-CSF and IL-4 independently of the stimulus used in vitro. Functional anti-PvDBP levels at recruitment had a positive association with birth weight (difference per doubling antibody levels: 45 g, p-value: 0.046). Thus, naturally acquired binding-inhibitory antibodies to PvDBP might confer protection against poor outcomes of Pv malaria in pregnancy.

2.
PLoS Negl Trop Dis ; 10(10): e0005009, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27711158

ABSTRACT

P. vivax infection during pregnancy has been associated with poor outcomes such as anemia, low birth weight and congenital malaria, thus representing an important global health problem. However, no vaccine is currently available for its prevention. Vir genes were the first putative virulent factors associated with P. vivax infections, yet very few studies have examined their potential role as targets of immunity. We investigated the immunogenic properties of five VIR proteins and two long synthetic peptides containing conserved VIR sequences (PvLP1 and PvLP2) in the context of the PregVax cohort study including women from five malaria endemic countries: Brazil, Colombia, Guatemala, India and Papua New Guinea (PNG) at different timepoints during and after pregnancy. Antibody responses against all antigens were detected in all populations, with PNG women presenting the highest levels overall. P. vivax infection at sample collection time was positively associated with antibody levels against PvLP1 (fold-increase: 1.60 at recruitment -first antenatal visit-) and PvLP2 (fold-increase: 1.63 at delivery), and P. falciparum co-infection was found to increase those responses (for PvLP1 at recruitment, fold-increase: 2.25). Levels of IgG against two VIR proteins at delivery were associated with higher birth weight (27 g increase per duplicating antibody levels, p<0.05). Peripheral blood mononuclear cells from PNG uninfected pregnant women had significantly higher antigen-specific IFN-γ TH1 responses (p=0.006) and secreted less pro-inflammatory cytokines TNF and IL-6 after PvLP2 stimulation than P. vivax-infected women (p<0.05). These data demonstrate that VIR antigens induce the natural acquisition of antibody and T cell memory responses that might be important in immunity to P. vivax during pregnancy in very diverse geographical settings.


Subject(s)
Antibodies, Protozoan/blood , Antigens, Protozoan/immunology , Immunoglobulin G/blood , Malaria, Vivax/immunology , Plasmodium vivax/immunology , Pregnancy Complications, Infectious/immunology , Th1 Cells/immunology , Adult , Birth Weight , Brazil/epidemiology , Cohort Studies , Coinfection/immunology , Coinfection/parasitology , Colombia/epidemiology , Cytokines/metabolism , Endemic Diseases , Female , Guatemala/epidemiology , Humans , Immunologic Memory , India/epidemiology , Interferon-gamma/metabolism , Leukocytes, Mononuclear/immunology , Malaria, Falciparum/immunology , Malaria, Vivax/epidemiology , Papua New Guinea/epidemiology , Plasmodium falciparum/genetics , Plasmodium falciparum/immunology , Plasmodium vivax/genetics , Plasmodium vivax/pathogenicity , Pregnancy , Pregnancy Complications, Infectious/epidemiology , Protozoan Proteins/genetics , Protozoan Proteins/immunology , Protozoan Proteins/isolation & purification
3.
Genom Data ; 9: 118-25, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27489776

ABSTRACT

Malarial parasite P. falciparum, an apicomplexan protozoan has a 23.3 MB nuclear genome and encodes ~ 5600 transcripts. The genetic diversity of the parasite within and across geographical zones is a challenge to gene expression studies which are essential for understanding of disease process, outcome and developing markers for diagnostics and prognostics. Here, we describe the strategy involved in designing a custom P. falciparum 15K array using the Agilent platform and Genotypic's Right Design methodology to study the transcriptome of Indian field isolates for which genome sequence information is limited. The array contains probes representing genome sequences of two distinct geographical isolates (i.e. 3D7 and HB3) and sub-telomeric var gene sequences of a third isolate (IT4) known to adhere in culture condition. Probes in the array have been selected based on their efficiency to detect transcripts through a 244K array experimentation. Array performance for the 15K array, was evaluated and validated using RNA materials from P. falciparum clinical isolates. A large percentage (91%) of the represented transcripts was detected from Indian P. falciparum patient isolates. Replicated probes and multiple probes representing the same gene showed perfect correlation between them suggesting good probe performance. Additional transcripts could be detected due to inclusion of unique probes representing HB3 strain transcripts. Variant surface antigen (VSA) transcripts were detected by optimized probes representing the VSA genes of three geographically distinct strains. The 15K cross strain P. falciparum array has shown good efficiency in detecting transcripts from P. falciparum parasite samples isolated from patients. The low parasite loads and presence of host RNA makes arrays a preferred platform for gene expression studies over RNA-Seq.

4.
Sci Rep ; 6: 24557, 2016 Apr 19.
Article in English | MEDLINE | ID: mdl-27090372

ABSTRACT

In Plasmodium vivax malaria, mechanisms that trigger transition from uncomplicated to fatal severe infections are obscure. In this multi-disciplinary study we have performed a comprehensive analysis of clinicopathological parameters and serum proteome profiles of vivax malaria patients with different severity levels of infection to investigate pathogenesis of severe malaria and identify surrogate markers of severity. Clinicopathological analysis and proteomics profiling has provided evidences for the modulation of diverse physiological pathways including oxidative stress, cytoskeletal regulation, lipid metabolism and complement cascades in severe malaria. Strikingly, unlike severe falciparum malaria the blood coagulation cascade was not found to be affected adversely in acute P. vivax infection. To the best of our knowledge, this is the first comprehensive proteomics study, which identified some possible cues for severe P. vivax infection. Our results suggest that Superoxide dismutase, Vitronectin, Titin, Apolipoprotein E, Serum amyloid A, and Haptoglobin are potential predictive markers for malaria severity.


Subject(s)
Biomarkers/blood , Cytoskeletal Proteins/blood , Malaria, Vivax/blood , Proteomics , Adult , Apolipoproteins E/blood , Connectin/blood , Female , Haptoglobins/metabolism , Humans , Malaria, Vivax/parasitology , Oxidative Stress , Plasmodium vivax/pathogenicity , Serum Amyloid A Protein/metabolism , Superoxide Dismutase/blood , Vitronectin/blood
5.
Infect Genet Evol ; 35: 96-108, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26247716

ABSTRACT

Systems biology approaches that are based on gene expression and bioinformatics analysis have been successful in predicting the functions of many genes in Plasmodium falciparum, a protozoan parasite responsible for most of the deaths due to malaria. However, approaches that can provide information about the biological processes that are active in this parasite in vivo during complicated malaria conditions have been scarcely deployed. Here we report the analysis of a weighted gene co-expression based network for P. falciparum, from non-cerebral clinical complications. Gene expression profiles of 20 P. falciparum clinical isolates were utilized to construct the same. A total of 20 highly interacting modules were identified post network creation. In 12 of these modules, at least 10% of the member genes, were found to be differentially regulated in parasites from patient isolates showing complications, when compared with those from patients with uncomplicated disease. Enrichment analysis helped identify biological processes like oxidation-reduction, electron transport chain, protein synthesis, ubiquitin dependent catabolic processes, RNA binding and purine nucleotide metabolic processes as associated with these modules. Additionally, for each module, highly connected hub genes were identified. Detailed functional analysis of many of these, which have known annotated functions underline their importance in parasite development and survival. This suggests, that other hub genes with unknown functions may also be playing crucial roles in parasite biology, and, are potential candidates for intervention strategies.


Subject(s)
Gene Expression , Malaria, Falciparum/complications , Plasmodium falciparum/genetics , Plasmodium falciparum/isolation & purification , Protozoan Proteins/genetics , Computational Biology/methods , Gene Expression Profiling , Gene Expression Regulation , Gene Regulatory Networks , Humans , Malaria, Falciparum/parasitology , Oligonucleotide Array Sequence Analysis
6.
Mol Biochem Parasitol ; 201(1): 31-46, 2015 May.
Article in English | MEDLINE | ID: mdl-26022315

ABSTRACT

In temperate and sub-tropical regions of Asia and Latin America, complicated malaria manifested as hepatic dysfunction or renal dysfunction is seen in all age groups. There has been a concerted focus on understanding the patho-physiological and molecular basis of complicated malaria in children, much less is known about it in adults. We report here, the analysis of data from a custom, cross strain microarray (Agilent Platform) using material from adult patient samples, showing hepatic dysfunction or renal failure. These are the most common manifestations seen in adults along with cerebral malaria. The data has been analyzed with reference to variant surface antigens, encoded by the var, rifin and stevor gene families. The differential regulation profiles of key genes (comparison between Plasmodium falciparum complicated and uncomplicated isolates) have been observed. The exportome has been analyzed using similar parameters. Gene ontology term based functional enrichment of differentially regulated genes identified, up-regulated genes statistically enriched (P<0.05) to critical biological processes like generation of precursor metabolite and energy, chromosome organization and electron transport chain. Systems network based functional enrichment of overall differentially regulated genes yielded a similar result. We are reporting here, up-regulation of var group B and C genes whose proteins are predicted to interact with CD36 receptor in the host, the up-regulation of domain cassette 13 (DC13) containing var group A, as also the up-regulation of group A rifins and many of the stevors. This is contrary to most other reports from pediatric patients, with cerebral malaria where the up-regulation of mostly var A group genes have been seen. A protein-protein interaction based network has been created and analysis performed. This co-expression and text mining based network has shown overall connectivity between the variant surface antigens (VSA) and the exportome. The up-regulation of var group B and C genes encoding PfEMP1 with different domain architecture would be important for deciding strategies for disease prevention.


Subject(s)
Antigens, Protozoan/genetics , Malaria, Falciparum/pathology , Malaria, Falciparum/parasitology , Membrane Proteins/genetics , Membrane Transport Proteins/genetics , Plasmodium falciparum/genetics , Protozoan Proteins/genetics , Antigens, Protozoan/metabolism , Antigens, Surface/genetics , Antigens, Surface/immunology , Antigens, Surface/metabolism , Gene Expression Profiling , Humans , Kidney Diseases/etiology , Kidney Diseases/pathology , Liver Diseases/etiology , Liver Diseases/pathology , Malaria, Falciparum/complications , Membrane Proteins/metabolism , Membrane Transport Proteins/metabolism , Microarray Analysis , Molecular Sequence Data , Plasmodium falciparum/metabolism , Protein Interaction Maps , Protozoan Proteins/metabolism , Sequence Analysis, DNA
7.
Am J Trop Med Hyg ; 92(1): 22-27, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25385861

ABSTRACT

Accurate diagnosis of glucose-6-phosphate dehydrogenase (G6PD) deficiency is required to avoid the risk of acute hemolysis associated with 8-aminoquinoline treatment. The performance of the BinaxNOW G6PD test compared with the quantitative spectrophotometric analysis of G6PD activity was assessed in 356 Plasmodium vivax-infected subjects in Brazil, Peru, Thailand, and India. In the quantitative assay, the median G6PD activity was 8.81 U/g hemoglobin (range = 0.05-20.19), with 11 (3%) subjects identified as deficient. Sensitivity of the BinaxNOW G6PD to detect deficient subjects was 54.5% (6 of 11), and specificity was 100% (345 of 345). Room temperatures inadvertently falling outside the range required to perform the rapid test (18-25°C) together with subtlety of color change and insufficient training could partially explain the low sensitivity found. Ensuring safe use of 8-aminoquinolines depends on additional development of simple, highly sensitive G6PD deficiency diagnostic tests suitable for routine use in malaria-endemic areas.


Subject(s)
Antimalarials/therapeutic use , Glycogen Storage Disease Type I/diagnosis , Malaria, Vivax/drug therapy , Point-of-Care Systems , Humans , Sensitivity and Specificity
8.
Exp Parasitol ; 141: 39-54, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24657575

ABSTRACT

Mechanisms regulating gene expression in malaria parasites are not well understood. Little is known about how the parasite regulates its gene expression during transition from one developmental stage to another and in response to various environmental conditions. Parasites in a diseased host face environments which differ from the static, well adapted in vitro conditions. Parasites thus need to adapt quickly and effectively to these conditions by establishing transcriptional states which are best suited for better survival. With the discovery of natural antisense transcripts (NATs) in this parasite and considering the various proposed mechanisms by which NATs might regulate gene expression, it has been speculated that these might be playing a critical role in gene regulation. We report here the diversity of NATs in this parasite, using isolates taken directly from patients with differing clinical symptoms caused by malaria infection. Using a custom designed strand specific whole genome microarray, a total of 797 NATs targeted against annotated loci have been detected. Out of these, 545 NATs are unique to this study. The majority of NATs were positively correlated with the expression pattern of the sense transcript. However, 96 genes showed a change in sense/antisense ratio on comparison between uncomplicated and complicated disease conditions. The antisense transcripts map to a broad range of biochemical/metabolic pathways, especially pathways pertaining to the central carbon metabolism and stress related pathways. Our data strongly suggests that a large group of NATs detected here are unannotated transcription units antisense to annotated gene models. The results reveal a previously unknown set of NATs that prevails in this parasite, their differential regulation in disease conditions and mapping to functionally well annotated genes. The results detailed here call for studies to deduce the possible mechanism of action of NATs, which would further help in understanding the in vivo pathological adaptations of these parasites.


Subject(s)
Gene Expression Regulation, Developmental/genetics , Malaria, Falciparum/parasitology , Plasmodium falciparum/genetics , RNA, Antisense/analysis , Adolescent , Adult , Chromosome Mapping , Female , Gene Ontology , Genome, Protozoan , Genome-Wide Association Study , Genotyping Techniques , Humans , Malaria, Falciparum/complications , Male , Middle Aged , Molecular Sequence Annotation , Oligonucleotide Array Sequence Analysis , Plasmodium falciparum/classification , Plasmodium falciparum/isolation & purification , Plasmodium falciparum/metabolism , RNA, Antisense/blood , RNA, Protozoan/isolation & purification , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Transcription, Genetic , Young Adult
9.
Handb Clin Neurol ; 121: 1501-20, 2014.
Article in English | MEDLINE | ID: mdl-24365433

ABSTRACT

The developing world is still endemic to rabies, tetanus, leprosy, and malaria. Globally more than 55000 people die of rabies each year, about 95% in Asia and Africa. Annually, more than 10 million people, mostly in Asia, receive postexposure vaccination against the disease. World Health Organization estimated tetanus-related deaths at 163000 in 2004 worldwide. Globally, the annual detection of new cases of leprosy continues to decline and the global case detection declined by 3.54% during 2008 compared to 2007. Malaria is endemic in most countries, except the US, Canada, Europe, and Russia. Malaria accounts for 1.5-2.7 million deaths annually. Much of the disease burden related to these four infections is preventable.


Subject(s)
Leprosy/complications , Malaria/complications , Nervous System Diseases/etiology , Rabies/complications , Tetanus/complications , Animals , Anti-Bacterial Agents/therapeutic use , Antimalarials/therapeutic use , Antiviral Agents/therapeutic use , Humans , Leprosy/diagnosis , Leprosy/pathology , Leprosy/therapy , Malaria/diagnosis , Malaria/pathology , Malaria/therapy , Malaria, Cerebral/diagnosis , Malaria, Cerebral/pathology , Malaria, Cerebral/therapy , Nervous System Diseases/diagnosis , Nervous System Diseases/pathology , Nervous System Diseases/therapy , Rabies/diagnosis , Rabies/pathology , Rabies/therapy , Tetanus/diagnosis , Tetanus/pathology , Tetanus/therapy
10.
Genom Data ; 2: 199-201, 2014 Dec.
Article in English | MEDLINE | ID: mdl-26484095

ABSTRACT

Natural antisense transcripts (NATs) have been detected in many organisms and shown to regulate gene expression. Similarly, NATs have also been observed in malaria parasites with most studies focused on Plasmodium falciparum. There were no reports on the presence of NATs in Plasmodium vivax, which has also been shown to cause severe malaria like P. falciparum, until a recent study published by us. To identify in vivo prevalence of antisense transcripts in P. vivax clinical isolates, we performed whole genome expression profiling using a custom designed strand-specific microarray that contains probes for both sense and antisense strands. Here we describe the experimental methods and analysis of the microarray data available in Gene Expression Omnibus (GEO) under GSE45165. Our data provides a resource for exploring the presence of antisense transcripts in P. vivax isolated from patients showing varying clinical symptoms. Related information about the description and interpretation of the data can be found in a recent publication by Boopathi and colleagues in Infection, Genetics and Evolution 2013.

11.
Genom Data ; 2: 393-5, 2014 Dec.
Article in English | MEDLINE | ID: mdl-26484136

ABSTRACT

Antisense transcription is pervasive among biological systems and one of the products of antisense transcription is natural antisense transcripts (NATs). Emerging evidences suggest that they are key regulators of gene expression. With the discovery of NATs in Plasmodium falciparum, it has been suggested that these might also be playing regulatory roles in this parasite. However, all the reports describing the diversity of NATs have come from parasites in culture condition except for a recent study published by us. In order to explore the in vivo diversity of NATs in P. falciparum clinical isolates, we performed a whole genome expression profiling using a strand-specific 244 K microarray that contains probes for both sense and antisense transcripts. In this report, we describe the experimental procedure and analysis thereof of the microarray data published recently in Gene Expression Omnibus (GEO) under accession number GSE44921. This published data provide a wealth of information about the prevalence of NATs in P. falciparum clinical isolates from patients with diverse malaria related disease conditions. Supplementary information about the description and interpretation of the data can be found in a recent publication by Subudhi et al. in Experimental Parasitology (2014).

12.
Infect Genet Evol ; 20: 428-43, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24121022

ABSTRACT

Plasmodium vivax is the most geographically widespread human malaria parasite causing approximately 130-435 million infections annually. It is an economic burden in many parts of the world and poses a public health challenge along with the other Plasmodium sp. The biology of this parasite is less studied and poorly understood, in spite of these facts. Emerging evidence of severe complications due to infections by this parasite provides an impetus to focus research on the same. Investigating the parasite directly from infected patients is the best way to study its biology and pathogenic mechanisms. Gene expression studies of this parasite directly obtained from the patients has provided evidence of gene regulation resulting in varying amount of transcript levels in the different blood stages. The mechanisms regulating gene expression in malaria parasites are not well understood. Discovery of Natural Antisense Transcripts (NATs) in Plasmodium falciparum has suggested that these might play an important role in regulating gene expression. We report here the genome-wide occurrence of NATs in P. vivax parasites from patients with differing clinical symptoms. A total of 1348 NATs against annotated gene loci have been detected using a custom designed microarray with strand specific probes. Majority of NATs identified from this study shows positive correlation with the expression pattern of the sense (S) transcript. Our data also shows condition specific expression patterns of varying S and antisense (AS) transcript levels. Genes with AS transcripts enrich to various biological processes. To our knowledge this is the first report on the presence of NATs from P. vivax obtained from infected patients with different disease complications. The data suggests differential regulation of gene expression in diverse clinical conditions, as shown by differing sense/antisense ratios and would lead to future detailed investigations of gene regulation.


Subject(s)
Antisense Elements (Genetics)/genetics , Gene Expression Regulation/genetics , Malaria, Vivax/genetics , Plasmodium vivax/genetics , RNA, Antisense/genetics , Adolescent , Adult , Chromosome Mapping , Female , Humans , Malaria, Vivax/parasitology , Male , Plasmodium vivax/isolation & purification , RNA, Protozoan/blood , RNA, Protozoan/genetics , Transcription, Genetic , Young Adult
13.
Pathog Glob Health ; 107(4): 180-8, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23816509

ABSTRACT

The 28S rRNA gene was amplified and sequenced from P. falciparum and P. vivax isolates collected from northwest India. Based upon the sequence diversity of the Plasmodium 28SrRNA gene in comparison with its human counterpart, various nested polymerase chain reaction (PCR) primers were designed from the 3R region of the 28SrRNA gene and evaluated on field isolates. This is the first report demonstrating the utility of this gene for species-specific diagnosis of malaria for these two species, prevalent in India. The initial evaluation on 363 clinical isolates indicated that, in comparison with microscopy, which showed sensitivity and specificity of 85·39% and 100% respectively, the sensitivity and specificity of the nested PCR assay was found to be 99·08% and 100% respectively. This assay was also successful in detecting mixed infections that are undetected by microscopy. Our results demonstrate the utility of the 28S rRNA gene as a diagnostic target for the detection of the major plasmodial species infecting humans.


Subject(s)
Malaria/diagnosis , Molecular Diagnostic Techniques/methods , Parasitology/methods , Plasmodium falciparum/classification , Plasmodium vivax/classification , Polymerase Chain Reaction/methods , RNA, Ribosomal, 28S/genetics , Coinfection/diagnosis , Coinfection/parasitology , DNA Primers/genetics , DNA, Protozoan/chemistry , DNA, Protozoan/genetics , Genes, rRNA , Humans , India , Malaria/parasitology , Plasmodium falciparum/genetics , Plasmodium vivax/genetics , Sensitivity and Specificity , Sequence Analysis, DNA
14.
Exp Parasitol ; 132(4): 410-6, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23043980

ABSTRACT

Plasmodium vivax is the predominant species of the human malaria parasite present in the Indian subcontinent. There have been recent reports on Chloroquine (CQ) resistance and severe manifestations shown by P. vivax from different regions of the world including India. This study focuses on Bikaner, India where during the last few years there have been continuous reports of severe manifestations by both Plasmodium falciparum and P. vivax. This region has a widespread use of Chloroquine and Sulfadoxine-Pyrimethamine for the treatment of malaria, but the resistance profiles of these drugs are not available. We report here the profile of mutations in marker genes associated with Chloroquine and antifolate drug resistance among the P. vivax parasites obtained from patients with severe (n=30) and non-severe (n=48) manifestations from this region. Most isolates showed the wild type alleles for both the Chloroquine and antifolate resistance markers (P<0.0005). Except for one isolate showing Y976F mutation in the Pvmdr-1 gene, no reported mutation was observed in the Pvmdr-1 or Pvcrt gene. This is in accordance with the fact that till date no Chloroquine resistance has been reported from this region. However, the single isolate with a mutation in Pvmdr-1 may suggest the beginning of the trend towards decreased susceptibility to Chloroquine. The frequency of PvDHFR-PvDHPS two locus mutations was higher among the patients showing severe manifestations than the patient group with non-severe (uncomplicated) malaria (P<0.003). None of the parasites from patients with uncomplicated P. vivax malaria showed the mutant PvDHPS genotype. Novel mutations in PvDHFR (S117H) and PvDHPS (F365L, D459A and M601I) were observed only in the parasite population obtained from patients exhibiting severe complications. Preliminary homology modeling and molecular docking studies predicted that these mutations apparently do not have any effect on the binding of the drug molecule to the enzyme. However, the presence of novel mutations in the PvDHPS gene indicate a degree of polymorphism of this molecule which is in contrast to available published information.


Subject(s)
Drug Resistance/genetics , Folic Acid Antagonists/pharmacology , Malaria, Vivax/parasitology , Mutation , Plasmodium vivax/drug effects , Adolescent , Adult , Aged , Chloroquine/pharmacology , Chloroquine/therapeutic use , Dihydropteroate Synthase/genetics , Female , Folic Acid Antagonists/therapeutic use , Genetic Markers/genetics , Genotype , Humans , India , Malaria, Vivax/blood , Malaria, Vivax/drug therapy , Male , Middle Aged , Plasmodium vivax/genetics , Polymorphism, Genetic , Tetrahydrofolate Dehydrogenase/genetics , Young Adult
15.
Acta Trop ; 122(1): 138-49, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22266119

ABSTRACT

The apicomplexan parasite Plasmodium vivax is responsible for causing more than 70% of human malaria cases in Central and South America, Southeastern Asia and the Indian subcontinent. The rising severity of the disease and the increasing incidences of resistance shown by this parasite towards usual therapeutic regimens have necessitated investigation of putative novel drug targets to combat this disease. The apicoplast, an organelle of procaryotic origin, and its circular genome carrying genes of possible functional importance, are being looked upon as potential drug targets. The genes on this circular genome are believed to be highly conserved among all Plasmodium species. Till date, the plastid genome of P. falciparum, P. berghei and P. chabaudi have been detailed while partial sequences of some genes from other parasites including P. vivax have been studied for identifying evolutionary positions of these parasites. The functional aspects and significance of most of these genes are still hypothetical. In one of our previous reports, we have detailed the complete sequence, as well as structural and functional characteristics of the Elongation factor encoding tufA gene from the plastid genome of P. vivax. We present here the sequences of large and small subunit rRNA (lsu and ssu rRNA) genes, sufB (ORF470) gene, RNA polymerase (rpo B, C) subunit genes and clpC (casienolytic protease) gene from the plastid genome of P. vivax. A comparative analysis of these genes between P. vivax and P. falciparum reveals approximately 5-16% differences. A codon usage analysis of major plastid genes has shown a high frequency of codons rich in A/T at any or all of the three positions in all the species. TTA, AAT, AAA, TAT, and ATA are the major preferred codons. The sequences, functional domains and structural analysis of respective proteins do not show any variations in the active sites. A comparative analysis of these Indian P. vivax plastid genome encoded genes has also been done to understand the evolutionary position of the Indian parasite in comparison to other Plasmodium species.


Subject(s)
DNA, Protozoan/genetics , Genes, Protozoan , Genome , Organelles/genetics , Plasmodium vivax/genetics , Codon , Conserved Sequence , DNA, Circular/chemistry , DNA, Circular/genetics , DNA, Protozoan/chemistry , India , Molecular Sequence Data , Plasmodium falciparum/genetics , Plasmodium vivax/isolation & purification , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid
16.
J Vector Borne Dis ; 47(3): 140-4, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20834082

ABSTRACT

OBJECTIVE: This study was conducted to assess the effect of combination treatment of quinine and rabeprazole in the treatment of uncomplicated Plasmodium falciparum malaria. METHODS: The study included 50 patients of uncomplicated P. falciparum malaria. Group 1 (25 patients) received quinine and placebo (Q+P) while Group 2 (25 patients) received quinine and rabeprazole (Q+R). Diagnosis was confirmed by peripheral blood film (PBF) and rapid diagnostic test (RDT). Temperature was recorded every 6 h. All patients were followed-up on Days 7, 14, 21, 28 for detailed clinical and parasitological examination. RESULTS: A total of 20 patients in each group completed the treatment and followed-up for 28 days. While two patients in Group 1 (Q+P) and one patient in Group 2 (Q+R) were lost in follow-up; and seven (Q+P = 4, Q+R =3) patients were withdrawn from the study. Fever clearance time (FCT) of the two groups was also almost similar (Group 1 : 2 = 52.8 : 51.3 h). No statistically significant difference was observed in early treatment failure (ETF) either of the groups. None of the patients in both the groups showed late clinical failure (LCF) or late parasitological failure (LPF). However, there was a significant difference in the parasite clearance rates of the two groups (p<0.05). CONCLUSION: The study results suggest that addition of rabeprazole to quinine regimen resulted in an increase in the parasite elimination rate, which may be helpful in reducing the duration of treatment and increasing patient compliance.


Subject(s)
2-Pyridinylmethylsulfinylbenzimidazoles/therapeutic use , Antimalarials/therapeutic use , Malaria, Falciparum/drug therapy , Quinine/therapeutic use , Adolescent , Adult , Drug Therapy, Combination , Female , Follow-Up Studies , Humans , Malaria, Falciparum/parasitology , Male , Middle Aged , Plasmodium falciparum/drug effects , Plasmodium falciparum/physiology , Rabeprazole , Treatment Outcome , Young Adult
18.
Lancet Infect Dis ; 9(9): 555-66, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19695492

ABSTRACT

Plasmodium vivax is geographically the most widely distributed cause of malaria in people, with up to 2.5 billion people at risk and an estimated 80 million to 300 million clinical cases every year--including severe disease and death. Despite this large burden of disease, P vivax is overlooked and left in the shadow of the enormous problem caused by Plasmodium falciparum in sub-Saharan Africa. The technological advances enabling the sequencing of the P vivax genome and a recent call for worldwide malaria eradication have together placed new emphasis on the importance of addressing P vivax as a major public health problem. However, because of this parasite's biology, it is especially difficult to interrupt the transmission of P vivax, and experts agree that the available methods for preventing and treating infections with P vivax are inadequate. It is thus imperative that the development of new methods and strategies become a priority. Advancing the development of such methods needs renewed emphasis on understanding the biology, pathogenesis, and epidemiology of P vivax. This Review critically examines what is known about P vivax, focusing on identifying the crucial gaps that create obstacles to the elimination of this parasite in human populations.


Subject(s)
Malaria, Vivax/epidemiology , Malaria, Vivax/parasitology , Plasmodium vivax/physiology , Plasmodium vivax/pathogenicity , Africa South of the Sahara , Animals , Antimalarials/pharmacology , Antimalarials/therapeutic use , Humans , Malaria, Vivax/drug therapy , Malaria, Vivax/prevention & control , Models, Animal , Plasmodium vivax/immunology
19.
Am J Trop Med Hyg ; 80(2): 194-8, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19190212

ABSTRACT

Epidemiologic studies and clinical description of severe Plasmodium vivax malaria in adults living in malaria-endemic areas are rare and more attention is needed to understand the dynamics and its interaction with the immune system. This observational study included 1,091 adult patients admitted to medical wards of S. P. Medical College and associated group of hospitals in Bikaner, India from September 2003 through December 2005. The diagnosis of P. vivax malaria was established by peripheral blood film (PBF), rapid diagnostic test (RDT), and polymerase chain reaction (PCR), and severe malaria was categorized as per World Health Organization guidelines. Of 1,091 patients with malaria, 635 had P. falciparum malaria and 456 had P. vivax malaria. Among patients with severe manifestations, 40 had evidence of monoinfection of P. vivax malaria diagnosed by PBF, RDT, and PCR. Complications observed were hepatic dysfunction and jaundice in 23 (57.5%) patients, renal failure in 18 (45%) patients, severe anemia in 13 (32.5%) patients, cerebral malaria in 5 patients (12.5%), acute respiratory distress syndrome in 4 patients (10%), shock in 3 patients (7.5%), and hypoglycemia in 1 (2.5%) patient. Thrombocytopenia was observed in 5 (12.5%) patients, and multi-organ dysfunction was detected in 19 (47.5%) patients. Further large-scale multicentric epidemiologic studies are needed to define the basic pathology of this less known entity.


Subject(s)
Malaria, Vivax/epidemiology , Malaria, Vivax/physiopathology , Plasmodium vivax/isolation & purification , Plasmodium vivax/pathogenicity , Adolescent , Adult , Animals , Antimalarials/therapeutic use , Female , Humans , India/epidemiology , Jaundice/epidemiology , Jaundice/parasitology , Jaundice/physiopathology , Malaria, Cerebral/epidemiology , Malaria, Cerebral/parasitology , Malaria, Cerebral/physiopathology , Malaria, Vivax/drug therapy , Malaria, Vivax/parasitology , Male , Middle Aged , Plasmodium vivax/classification , Plasmodium vivax/genetics , Polymerase Chain Reaction/methods , Severity of Illness Index , Young Adult
20.
Neurol India ; 55(4): 413-5, 2007.
Article in English | MEDLINE | ID: mdl-18040123

ABSTRACT

Acute intermittent porphyria presenting with short duration of gastrointestinal symptoms followed by rapidly progressive fulminant neurological syndrome during first attack is relatively uncommon. It is a neurological emergency and mimics many other psychiatric and medical disorders and can be fatal if it remains undiagnosed and untreated. Further, specific treatment in the form of Heme arginate is not universally available and very costly, so high clinical suspicion and early diagnosis and management of acute attack and prevention of further attacks are very important. We report a series of six cases who presented with convulsion and/or polyneuropathy early in the course of disease to highlight this fact.


Subject(s)
Polyneuropathies/etiology , Porphyria, Acute Intermittent/complications , Seizures/etiology , Adolescent , Adult , Amines/therapeutic use , Anticonvulsants/therapeutic use , Cyclohexanecarboxylic Acids/therapeutic use , Emergency Medical Services , Female , Gabapentin , Humans , Lorazepam/therapeutic use , Male , Polyneuropathies/diagnosis , Porphyria, Acute Intermittent/diagnosis , Pregnancy , Seizures/diagnosis , Young Adult , gamma-Aminobutyric Acid/therapeutic use
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