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1.
MycoKeys ; 99: 251-268, 2023.
Article in English | MEDLINE | ID: mdl-37867781

ABSTRACT

The discovery and study of three new species of Trimmatothelopsis from Southwestern North America, T.californica, T.mexicana, and T.novomexicana, adds not only to the diversity of the genus and family but generated new insights into the occurrence of two ascus types in the genus and the variety of conidiogenous cells and conidia. Trimmatothelopsis now includes 15 species with a mainly Holarctic distribution (Asia, Europe, North America) and one species in Australia. A key is supplied to the genus. An overview of the genus Trimmatothelopsis is given, including differentiation from other genera of Acarosporaceae. The monotypic genus Thelocarpella is considered to be a synonym of Trimmatothelopsis. The new combination Trimmatothelopsiswirthii is proposed. The ascus type is shown to be variable in the genus with species with two types being intermixed with each other in our phylogeny.

2.
Curr Biol ; 32(23): 5209-5218.e5, 2022 Dec 05.
Article in English | MEDLINE | ID: mdl-36423639

ABSTRACT

Ascomycota account for about two-thirds of named fungal species.1 Over 98% of known Ascomycota belong to the Pezizomycotina, including many economically important species as well as diverse pathogens, decomposers, and mutualistic symbionts.2 Our understanding of Pezizomycotina evolution has until now been based on sampling traditionally well-defined taxonomic classes.3,4,5 However, considerable diversity exists in undersampled and uncultured, putatively early-diverging lineages, and the effect of these on evolutionary models has seldom been tested. We obtained genomes from 30 putative early-diverging lineages not included in recent phylogenomic analyses and analyzed these together with 451 genomes covering all available ascomycete genera. We show that 22 of these lineages, collectively representing over 600 species, trace back to a single origin that diverged from the common ancestor of Eurotiomycetes and Lecanoromycetes over 300 million years BP. The new clade, which we recognize as a more broadly defined Lichinomycetes, includes lichen and insect symbionts, endophytes, and putative mycorrhizae and encompasses a range of morphologies so disparate that they have recently been placed in six different taxonomic classes. To test for shared hidden features within this group, we analyzed genome content and compared gene repertoires to related groups in Ascomycota. Regardless of their lifestyle, Lichinomycetes have smaller genomes than most filamentous Ascomycota, with reduced arsenals of carbohydrate-degrading enzymes and secondary metabolite gene clusters. Our expanded genome sample resolves the relationships of numerous "orphan" ascomycetes and establishes the independent evolutionary origins of multiple mutualistic lifestyles within a single, morphologically hyperdiverse clade of fungi.

3.
Mycologia ; 111(1): 127-160, 2019.
Article in English | MEDLINE | ID: mdl-30724710

ABSTRACT

Rock-inhabiting fungi (RIF) are adapted to thrive in oligotrophic environments and to survive under conditions of abiotic stress. Under these circumstances, they form biocoenoses with other tolerant organisms, such as lichens, or with less specific phototrophic consortia of aerial algae or cyanobacteria. RIF are phylogenetically diverse, and their plastic morphological characters hamper the straightforward species delimitation of many taxa. Here, we present a phylogenetic study of two RIF genera, Lichenothelia and Saxomyces. Representatives of both genera inhabit rather similar niches on rocks, but their phylogenetic relationships are unknown so far. The cosmopolitan genus Lichenothelia is recognized by characters of fertile ascomata and includes species with different life strategies. In contrast, Saxomyces species were described exclusively by mycelial characters found in cultured isolates from rock samples collected at high alpine elevations. Here, we use an extended taxon sampling of Dothideomycetes to study the phylogenetic relationships of both Lichenothelia and Saxomyces. We consider environmental samples, type species, and cultured isolates of both genera and demonstrate their paraphyly, as well as the occurrence of teleomorphs in Saxomyces. We applied three species delimitation methods to improve species recognition based on molecular data. We show the distinctiveness of the two main lineages of Lichenothelia (Lichenotheliales s. str.) and Saxomyces and discuss differences in species delimitation depending on molecular markers or methods. We revise the taxonomy of the two genera and describe three new taxa, Lichenothelia papilliformis, L. muriformis, and Saxomyces americanus, and the teleomorph of S. penninicus.


Subject(s)
Ascomycota/classification , Ascomycota/genetics , Phylogeny , Ascomycota/isolation & purification , DNA, Fungal/genetics , DNA, Ribosomal/genetics , Ecosystem , Evolution, Molecular , Sequence Analysis, DNA , Stress, Physiological
4.
Chemosphere ; 193: 230-236, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29136569

ABSTRACT

After the phasing out of leaded gasoline, Pb emissions to the atmosphere dramatically decreased, and other sources became more significant. The contribution of unleaded gasoline has not been sufficiently recognized; therefore, we evaluated the impact of Pb from unleaded gasoline in a relatively pristine area in Subarctic NE Norway. The influence of different endmembers (Ni slag and concentrate from the Nikel smelter in Russia, PM10 filters, and traffic) on the overall Pb emissions was determined using various environmental samples (snow, lichens, and topsoils) and Pb isotope tracing. We found a strong relationship between Pb in snow and the Ni smelter. However, lichen samples and most of the topsoils were contaminated by Pb originating from the current use of unleaded gasoline originating from Russia. Historical leaded and recent unleaded gasoline are fully distinguishable using Pb isotopes, as unleaded gasoline is characterized by a low radiogenic composition (206Pb/207Pb = 1.098 and 208Pb/206Pb = 2.060) and remains an unneglectable source of Pb in the region.


Subject(s)
Atmosphere/chemistry , Environmental Monitoring , Environmental Pollutants/analysis , Gasoline/analysis , Lead/analysis , Vehicle Emissions/analysis , Isotopes/analysis , Lichens/chemistry , Norway , Russia , Snow/chemistry
5.
Environ Monit Assess ; 189(9): 478, 2017 Aug 29.
Article in English | MEDLINE | ID: mdl-28852908

ABSTRACT

This study is a continuation of our preceding research identifying suitable environmental samples for the tracing of atmospheric pollution in industrial areas. Three additional types of environmental samples were used to characterise contamination sources in the industrial area of Ostrava city, Czech Republic. The region is known for its extensive metallurgical and mining activities. Fingerprinting of stable Pb isotopes was applied to distinguish individual sources of anthropogenic Pb. A wide range of 206Pb/207Pb ratios was observed in the investigated samples: 206Pb/207Pb = 1.168-1.198 in mosses; 206Pb/207Pb = 1.167-1.215 in soils and 206Pb/207Pb = 1.158-1.184 in tree cores. Black and brown coal combustion, as well as metallurgical activities, is the two main sources of pollution in the area. Fossil fuel burning in industry and households seems to be a stronger source of Pb emissions than from the metallurgical industry. Concentration analyses of tree rings showed that a significant increase in As concentrations occurred between 1999 and 2016 (from 0.38 mg kg-1 to 13.8 mg kg-1). This shift corresponds to the use of brown coal from Bílina, Czech Republic, with an increased As concentration. The burning of low-quality fuels in households remains a problem in the area, as small ground sources have a greater influence on the air quality than do industrial sources.


Subject(s)
Air Pollution/analysis , Coal Mining , Environmental Biomarkers , Environmental Monitoring/methods , Metallurgy , Arsenic/analysis , Bryophyta/chemistry , Czech Republic , Industrial Development , Isotopes/analysis , Lead/analysis , Soil/chemistry , Urbanization , Wood/chemistry
6.
Environ Pollut ; 228: 149-157, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28528262

ABSTRACT

The use of Ni and Cu isotopes for tracing contamination sources in the environment remains a challenging task due to the limited information about the influence of various biogeochemical processes influencing stable isotope fractionation. This work focuses on a relatively simple system in north-east Norway with two possible endmembers (smelter-bedrock) and various environmental samples (snow, soil, lichens, PM10). In general, the whole area is enriched in heavy Ni and Cu isotopes highlighting the impact of the smelting activity. However, the environmental samples exhibit a large range of δ60Ni (-0.01 ± 0.03‰ to 1.71 ± 0.02‰) and δ65Cu (-0.06 ± 0.06‰ to -3.94 ± 0.3‰) values which exceeds the range of δ60Ni and δ65Cu values determined in the smelter, i.e. in feeding material and slag (δ60Ni from 0.56 ± 0.06‰ to 1.00 ± 0.06‰ and δ65Cu from -1.67 ± 0.04‰ to -1.68 ± 0.15‰). The shift toward heavier Ni and Cu δ values was the most significant in organic rich topsoil samples in the case of Ni (δ60Ni up to 1.71 ± 0.02‰) and in lichens and snow in the case of Cu (δ65Cu up to -0.06 ± 0.06‰ and -0.24 ± 0.04‰, respectively). These data suggest an important biological and biochemical fractionation (microorganisms and/or metal uptake by higher plants, organo-complexation etc.) of Ni and Cu isotopes, which should be quantified separately for each process and taken into account when using the stable isotopes for tracing contamination in the environment.


Subject(s)
Copper/analysis , Environmental Monitoring/methods , Nickel/analysis , Chemical Fractionation , Environmental Pollution/statistics & numerical data , Isotopes/analysis , Metals , Norway , Snow , Soil
7.
Environ Pollut ; 220(Pt A): 286-297, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27667678

ABSTRACT

Samples of lichens, snow and particulate matter (PM10, 24 h) are used for the source identification of air pollution in the heavily industrialized region of Ostrava, Upper Silesia, Czech Republic. An integrated approach that uses different environmental samples for metal concentration and Pb isotope analyses was applied. The broad range of isotope ratios in the samples indicates a combination of different pollution sources, the strongest among them being the metallurgical industry, bituminous coal combustion and traffic. Snow samples are proven as the most relevant indicator for tracing metal(loid)s and recent local contamination in the atmosphere. Lichens can be successfully used as tracers of the long-term activity of local and remote sources of contamination. The combination of PM10 with snow can provide very useful information for evaluation of current pollution sources.


Subject(s)
Air Pollutants/analysis , Air Pollution/analysis , Atmosphere/chemistry , Environmental Monitoring/methods , Particulate Matter/analysis , Coal/analysis , Czech Republic , Industry , Isotopes/analysis , Lichens/metabolism , Metals/analysis , Snow/chemistry
8.
Neuropsychiatr Dis Treat ; 12: 1639-44, 2016.
Article in English | MEDLINE | ID: mdl-27462156

ABSTRACT

BACKGROUND: The marked increase in autism spectrum disorders (ASD) prevalence has stimulated worldwide interest in exploring broader circumstances of care of autistic children, including the role of socioeconomic status (SES) and family information on autism. METHODS: Our sample comprised of 160 children who participated in a diagnostic examination focused on autism, and their parents who completed a simple descriptive questionnaire focusing on the family situation as well as family self-education about autism. The diagnosis of ASD was confirmed in 120 children (75% of the sample; 94 boys, 26 girls) with mean age 6.2±2.7 years (median 5.3, range 2.2-17.2 years). In 71 autistic patients (59.2%), a diagnosis of mental retardation was also established. RESULTS: The age at diagnosis of ASD correlated negatively with maternal (P=0.014) and paternal (P=0.002) ages at the time of birth of the ASD child as well as with paternal (P=0.002) and maternal (P=0.050) education. The age at diagnosis of ASD did not correlate with family SES. Mothers were significantly more active in seeking information on autism than fathers or both parents equally (80 vs 9 vs 28 cases, respectively; P<0.001). The mean number of information sources on autism was 3.5±1.8 with a range 0-9. The mean number of resources did not differ among the three SES groups (3.50 vs 3.49 vs 4.25, respectively; P=0.704). The mean number of sources did not correlate with the age at diagnosis of ASD. The most often used sources were the Internet (81.7%), followed by psychologists (48.3%), books (46.7%), and child and adolescent psychiatrists (43.3%). CONCLUSION: An earlier diagnosis of ASD is associated with higher parental age at birth and higher parental education but not with family SES or number of family information sources.

9.
Neuropsychiatr Dis Treat ; 12: 787-93, 2016.
Article in English | MEDLINE | ID: mdl-27114709

ABSTRACT

Comorbid psychopathology, including self-harm and suicidal behavior, is often found in patients with eating disorders. To better understand the reasons for high comorbid psychopathology among eating disorders, self-harm, and suicidal behavior, we examined this comorbidity in female patients hospitalized with eating disorders. In a sample of 47 girls admitted for anorexia nervosa, atypical anorexia nervosa, and bulimia nervosa, 72% had depressive symptoms, 11% had obsessive-compulsive symptoms, 9% had anxiety disorder, 23% had substance abuse, and 57% had disharmonious personality development. Suicidal behavior was present in 60% of patients and self-harm in 49%. Association was found between self-harm and suicidality. In all, 68% of girls with eating disorders had a positive score in the Children's Depression Inventory questionnaire and 62% of them in the Child Adolescent Suicidal Potential Index questionnaire. Clinical examination of girls with eating disorders should focus on identifying the risk of suicidal behavior and self-harm.

10.
Mycologia ; 107(6): 1233-53, 2015.
Article in English | MEDLINE | ID: mdl-26297777

ABSTRACT

Rock-inhabiting fungi (RIF) are melanized, meristematic fungi which dwell on and within rocks and have adapted to withstand harsh conditions in extreme habitats worldwide. Their morphological and genetic diversity remained unknown for a long time, but in the past few years culture-dependent and molecular phylogenetic approaches have contributed to uncovering the species richness of these otherwise very inconspicuous fungi. Only a few taxa of RIF develop both sexual reproductive structure (fertile stromata and/or pycnidia) and show multiple life styles, interacting with algae and lichen thalli in different ways. The genus Lichenothelia is one of these: It is characterized by fertile stromata and pycnidia and by species which can grow on and within exposed rocks, optionally associating with algae, with some species also being lichenicolous. The genus Lichenothelia includes up to now 25 species and form a monotypic family (Lichenotheliaceae) and order (Lichenotheliales) in Dothideomycetes. Here we focused on a group of Lichenothelia taxa distributed in the hot arid region of the Sonoran and Mojave Deserts in the Joshua Tree National Park in California. We performed molecular and morphological analyses and culture isolation and considered the ecology of the environmental samples to disentangle five species. We present the revision of two species already described, Lichenothelia calcarea and L. convexa, and introduce three new taxa to science, L. arida, L. umbrophila and L. umbrophila var. pullata.


Subject(s)
Ascomycota/classification , Ascomycota/isolation & purification , Geologic Sediments/microbiology , Ascomycota/genetics , Ascomycota/growth & development , Desert Climate , Ecosystem , Molecular Sequence Data , Phylogeny , Spores, Fungal/classification , Spores, Fungal/genetics , Spores, Fungal/growth & development , Spores, Fungal/isolation & purification
11.
Neuropsychiatr Dis Treat ; 11: 1639-43, 2015.
Article in English | MEDLINE | ID: mdl-26170676

ABSTRACT

Eating disorders frequently occur in conjunction with autism spectrum disorders, posing diagnostic and therapeutic difficulties. The comorbidity of anorexia nervosa and Asperger syndrome is a significant clinical complication and has been associated with a poorer prognosis. The authors are presenting the cases of an eleven-year-old girl and a five-and-a-half-year-old girl with comorbid eating disorders and Asperger syndrome.

12.
Neuropsychiatr Dis Treat ; 9: 1815-9, 2013.
Article in English | MEDLINE | ID: mdl-24294002

ABSTRACT

Asperger syndrome hinders adaptation to developmental challenges during childhood and adolescence, particularly with regard to interpersonal relationships. Individuals with Asperger syndrome display lack of empathy and limited ability to understand social and emotional exchanges with other people. Individuals with Asperger syndrome are significantly exposed to the risk of suicidal behavior, especially during adolescence. The authors describe cases of suicidal behavior in two adolescent boys with Asperger syndrome.

13.
Neuro Endocrinol Lett ; 32(6): 748-50, 2011.
Article in English | MEDLINE | ID: mdl-22286782

ABSTRACT

Eating disorders represent significant psychopathological spectrum, particularly in adolescent girls. One of the risk factors associated with eating disorders is a strong emphasis of western visual-oriented culture on physical appearance and slimness. However, sensory handicap leading to disability to see one's own body and bodies of others does not mean that eating disorder cannot develop in blind people. The authors believe that body image is a mental construct that is not dependent on sensory perception only. They present the case of an adolescent patient, blind from early childhood, who shows symptoms of mental anorexia, depression, suicidal behavior and self-harming.


Subject(s)
Anorexia Nervosa/physiopathology , Blindness/physiopathology , Adolescent , Anorexia Nervosa/epidemiology , Anorexia Nervosa/psychology , Anorexia Nervosa/therapy , Blindness/epidemiology , Blindness/psychology , Blindness/therapy , Body Image , Comorbidity , Female , Humans , Psychotherapy
14.
Neuro Endocrinol Lett ; 30(6): 705-8, 2009.
Article in English | MEDLINE | ID: mdl-20038924

ABSTRACT

Self-harm represents a serious and pathological behavior that occurs most notably during adolescent years and currently seems to be a problem that is on the increase. Self-harm is a self destructive behavior which most frequently takes the form of cutting and burning. Relative to suicidal behavior, self-harm, in and of itself, is not intended to be lethal and tends to be repeated and addictive. However, in cases of self-harm the risk of suicidal behavior cannot be ignored. This presentation is a case study of a girl who engaged in an unusual form of self-harm, by swallowing needles.


Subject(s)
Foreign Bodies/diagnosis , Foreign Bodies/psychology , Needles , Self-Injurious Behavior/diagnosis , Self-Injurious Behavior/psychology , Adolescent , Deglutition , Family Conflict/psychology , Female , Humans , Suicide, Attempted/psychology
15.
J Child Adolesc Ment Health ; 18(2): 79-81, 2006 Oct.
Article in English | MEDLINE | ID: mdl-25865209

ABSTRACT

Two cases of attempted suicide by adolescents, following the separation from an idealised first sexual partner, are presented to illustrate psychodynamic issues often overlooked in clinical assessment. Absent fathers and father figures and other psychodynamic issues are explored.

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