Diffusion, phase behavior, and gelation in a two-dimensional layer of colloids in osmotic equilibrium with a polymer reservoir.

The addition of enough non-adsorbing polymers to an otherwise stable colloidal suspension gives rise to a variety of phase behaviors and kinetic arrest due to the depletion attraction induced between the colloids by the polymers. We report a study of these phenomena in a two-dimensional layer of colloids. The three-dimensional phenomenology of crystal-fluid coexistence is reproduced, but gelation takes a novel form, in which the strands in the gel structure are locally crystalline. We compare our findings with a previous simulation and theory and find substantial agreement.

Dynamic optical rectification and delivery of active particles.

We use moving light patterns to control the motion of Escherichia coli bacteria whose motility is photo-activated. Varying the pattern speed controls the magnitude and direction of the bacterial flux, and therefore the accumulation of cells in up- and down-stream reservoirs. We validate our results with two-dimensional simulations and a 1-dimensional analytic model, and use these to explore parameter space. We find that cell accumulation is controlled by a competition between directed flux and undirected, stochastic transport. Our results point to a number of design principles for using moving light patterns and light-activated micro-swimmers in a range of practical applications.

Dynamical analysis of bacteria in microscopy movies.

Recent advances in microscopy, computing power and image processing have enabled the analysis of ever larger datasets of movies of microorganisms to study their behaviour. However, techniques for analysing the dynamics of individual cells from such datasets are not yet widely available in the public domain. We recently demonstrated significant phenotypic heterogeneity in the adhesion of Escherichia coli bacteria to glass surfaces using a new method for the high-throughput analysis of video microscopy data. Here, we present an in-depth analysis of this method and its limitations, and make public our algorithms for following the positions and orientations of individual rod-shaped bacteria from time-series of 2D images to reconstruct their trajectories and characterise their dynamics. We demonstrate in detail how to use these algorithms to identify different types of adhesive dynamics within a clonal population of bacteria sedimenting onto a surface. The effects of measurement errors in cell positions and of limited trajectory durations on our results are discussed.

Motile bacteria in a critical fluid mixture.

We studied the swimming of Escherichia coli bacteria in the vicinity of the critical point in a solution of the nonionic surfactant C_{12}E_{5} in buffer solution. In phase-contrast microscopy, each swimming cell produces a transient trail behind itself lasting several seconds. Comparing quantitative image analysis with simulations show that these trails are due to local phase reorganization triggered by differential adsorption. This contrasts with similar trails seen in bacteria swimming in liquid crystals, which are due to shear effects. We show how our trails are controlled, and use them to probe the structure and dynamics of critical fluctuations in the fluid medium.

Bacteria as living patchy colloids: Phenotypic heterogeneity in surface adhesion.

Understanding and controlling the surface adhesion of pathogenic bacteria is of urgent biomedical importance. However, many aspects of this process remain unclear (for example, microscopic details of the initial adhesion and possible variations between individual cells). Using a new high-throughput method, we identify and follow many single cells within a clonal population of Escherichia coli near a glass surface. We find strong phenotypic heterogeneities: A fraction of the cells remain in the free (planktonic) state, whereas others adhere with an adhesion strength that itself exhibits phenotypic heterogeneity. We explain our observations using a patchy colloid model; cells bind with localized, adhesive patches, and the strength of adhesion is determined by the number of patches: Nonadherers have no patches, weak adherers bind with a single patch only, and strong adherers bind via a single or multiple patches. We discuss possible implications of our results for controlling bacterial adhesion in biomedical and other applications.

Colloidal gels tuned by oscillatory shear.

We examine the microstructural and mechanical changes which occur during oscillatory shear flow and reformation after flow cessation of an intermediate volume fraction colloidal gel using rheometry and Brownian Dynamics (BD) simulations. A model depletion colloid-polymer mixture is used, comprising a hard sphere colloidal suspension with the addition of non-adsorbing linear polymer chains. The results reveal three distinct regimes depending on the strain amplitude of oscillatory shear. Large shear strain amplitudes fully break the structure which results in a more homogenous and stronger gel after flow cessation. Intermediate strain amplitudes densify the clusters and lead to highly heterogeneous and weak gels. Shearing the gel to even lower strain amplitudes creates a less heterogonous stronger solid. These three regimes of shearing are connected to the microscopic shear-induced structural heterogeneity. A comparison with steady shear flow reveals that the latter does not produce structural heterogeneities as large as oscillatory shear. Therefore oscillatory shear is a much more efficient way of tuning the mechanical properties of colloidal gels. Moreover, colloidal gels presheared at large strain amplitudes exhibit a distinct nonlinear response characterized largely by a single yielding process while in those presheared at lower rates a two-step yielding process is promoted due to the creation of highly heterogeneous structures.

Tuning colloidal gels by shear.

Using a powerful combination of experiments and simulations we demonstrate how the microstructure and its time evolution are linked with mechanical properties in a frustrated, out-of-equilibrium, particle gel under shear. An intermediate volume fraction colloid-polymer gel is used as a model system, allowing quantification of the interplay between interparticle attractions and shear forces. Rheometry, confocal microscopy and Brownian dynamics reveal that high shear rates, fully breaking the structure, lead after shear cessation to more homogeneous and stronger gels, whereas preshear at low rates creates largely heterogeneous weaker gels with reduced elasticity. We find that in comparison, thermal quenching cannot produce structural inhomogeneities under shear. We argue that external shear has strong implications on routes towards metastable equilibrium, and therefore gelation scenarios. Moreover, these results have strong implications for material design and industrial applications, such as mixing, processing and transport protocols coupled to the properties of the final material.