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Nat Methods ; 18(12): 1496-1498, 2021 12.
Article in English | MEDLINE | ID: mdl-34845388

ABSTRACT

The rapid pace of innovation in biological imaging and the diversity of its applications have prevented the establishment of a community-agreed standardized data format. We propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging. Critically, a common metadata format used in all these vessels can deliver truly findable, accessible, interoperable and reusable bioimaging data.


Subject(s)
Computational Biology/instrumentation , Computational Biology/standards , Metadata , Microscopy/instrumentation , Microscopy/standards , Software , Benchmarking , Computational Biology/methods , Data Compression , Databases, Factual , Information Storage and Retrieval , Internet , Microscopy/methods , Programming Languages , SARS-CoV-2
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