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1.
Schweiz Arch Tierheilkd ; 161(9): 545-552, 2019 Sep.
Article in German | MEDLINE | ID: mdl-31488395

ABSTRACT

INTRODUCTION: Animal welfare in equestrian sports is a very current and important topic for animal right groups as well as for the Swiss association for equestrian sports "Schweizerischer Verband für Pferdesport (SVPS)". The penalty commission "Sanktionskomission (SAKO)" of the SVPS reported only few to none cases of infringements of animal welfare provision on horses at a time in the past few years. This fact was criticised several times by different animal right groups in Switzerland. Therefore a survey was sent in 2017 to 544 active officials (horse show judges) of the SVPS. Overall, 146 answered questionnaires could be evaluated. The evaluation of the survey was able to confirm the statement of the animal right groups that the number of infringements of animal welfare provision is much higher than the number -handled by the SAKO. Altogether, 203 offences which are relevant in animal welfare were observed by the officials who participated in this survey in 2017. In contrast to these findings, no handled cases of infringements in animal welfare provision were published in the annual report 2017 of the SAKO. 178 of the 203 offences observed by the officials were addressed and reprimanded directly on the showground. The most common incidents which are relevant in animal welfare named by the officials in the survey were inappropriate, aggressive behaviour of the rider or driver and rough handling with artificial aids. A considerable part of the officials feels that the animal welfare situation on Swiss equestrian showgrounds is unsatisfying. An improvement of animal protection in Swiss equestrian sports can be achieved by raising the awareness for this topic of the officials as well as the equestrians and horse owners.


INTRODUCTION: La protection des animaux dans les sports équestres est un sujet d'actualité très important tant pour les organisations de protection des animaux que pour Fédération suisse des Sports Equestres (FSSE). La Commission des sanctions de la FSSE n'a eu à traiter que peu ou pas de cas d'infractions aux dispositions relatives au bien-être animal sur les chevaux au cours des dernières années. Ce fait a été critiqué à plusieurs reprises par différentes associations de protection des animaux en Suisse. Par conséquent, un sondage a été envoyé en 2017 à 544 officiels actifs (juges de concours, constructeurs de parcours) de la FSSE. Au total, 146 réponses aux questionnaires ont pu être évaluées. L'évaluation de l'enquête a permis de confirmer l'affirmation des organisations de protection des animaux selon laquelle le nombre d'atteintes au bien-être des animaux est plus élevé que celui traité par la SAKO. Au total, 203 comportements concernant la protection des animaux ont été constatés en 2017par les 146 officiels qui ont participé à cette enquête. Aucun cas traité d'infraction aux dispositions relatives au bien-être animal n'a été publié dans le rapport annuel 2017 de la Commission des sanctions. 178 des 203 infractions constatées par les officiels ont été relevées et réprimandées directement sur la place de concours. Les incidents les plus fréquents concernant le bien-être des animaux, cités par les responsables de l'enquête, étaient un comportement agressif inapproprié du cavalier et une utilisation brutale avec des aides artificielles et des moyens auxiliaires. Une grande partie des officiels estiment que la situation du bien-être animal sur les places de concours équestres suisses peut encore être améliorée. Pour cela il est particulièrement important de faire preuve d'un courage suffisant pour intervenir lorsqu'une situation problématique est observée. Une sensibilisation permanente des officiels ainsi que des cavaliers et des détenteurs de chevaux est également nécessaire.


Subject(s)
Animal Welfare/ethics , Horses , Sports/ethics , Animals , Switzerland
2.
Br J Radiol ; 88(1046): 20140503, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25496373

ABSTRACT

OBJECTIVE: To establish the prevalence of red dot markers in a sample of wrist radiographs and to identify any anatomical and/or pathological characteristics that predict "incorrect" red dot classification. METHODS: Accident and emergency (A&E) wrist cases from a digital imaging and communications in medicine/digital teaching library were examined for red dot prevalence and for the presence of several anatomical and pathological features. Binary logistic regression analyses were run to establish if any of these features were predictors of incorrect red dot classification. RESULTS: 398 cases were analysed. Red dot was "incorrectly" classified in 8.5% of cases; 6.3% were "false negatives" ("FNs")and 2.3% false positives (FPs) (one decimal place). Old fractures [odds ratio (OR), 5.070 (1.256-20.471)] and reported degenerative change [OR, 9.870 (2.300-42.359)] were found to predict FPs. Frykman V [OR, 9.500 (1.954-46.179)], Frykman VI [OR, 6.333 (1.205-33.283)] and non-Frykman positive abnormalities [OR, 4.597 (1.264-16.711)] predict "FNs". Old fractures and Frykman VI were predictive of error at 90% confidence interval (CI); the rest at 95% CI. CONCLUSION: The five predictors of incorrect red dot classification may inform the image interpretation training of radiographers and other professionals to reduce diagnostic error. Verification with larger samples would reinforce these findings. ADVANCES IN KNOWLEDGE: All healthcare providers strive to eradicate diagnostic error. By examining specific anatomical and pathological predictors on radiographs for such error, as well as extrinsic factors that may affect reporting accuracy, image interpretation training can focus on these "problem" areas and influence which radiographic abnormality detection schemes are appropriate to implement in A&E departments.


Subject(s)
Fractures, Bone/diagnostic imaging , Wrist Injuries/diagnostic imaging , Wrist/diagnostic imaging , Diagnostic Errors , Follow-Up Studies , Fractures, Bone/classification , Humans , Prevalence , Radiography , Retrospective Studies , Wrist Injuries/classification
3.
Acta Neurochir (Wien) ; 147(6): 671-3; discussion 673, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15605195

ABSTRACT

Within 10 days after cystoscopy causing urosepsis this patient developed persistant neckpain as initial symptom of vertebral osteomyelitis. E. coli was isolated from urine, blood cultures and later from bone biopsy. Antibiotic treatment did not stop the progress of the disease. A transverse spinal cord syndrome occurred due to a pathological fracture of C5 and C6 and operative decompression was necessary. The rapid onset of osteomyelitis was impressive. For effective treatment of bacterial osteomyelitis a bone biopsy is sometimes unavoidable and indicated.


Subject(s)
Cervical Vertebrae , Escherichia coli Infections/diagnosis , Osteomyelitis/diagnosis , Anti-Bacterial Agents/administration & dosage , Ceftriaxone/administration & dosage , Cystoscopy/adverse effects , Escherichia coli Infections/drug therapy , Escherichia coli Infections/etiology , Humans , Male , Middle Aged , Osteomyelitis/drug therapy , Osteomyelitis/microbiology , Sepsis/etiology
4.
Res Microbiol ; 152(3-4): 323-9, 2001.
Article in English | MEDLINE | ID: mdl-11421279

ABSTRACT

It is generally agreed that cytochrome c biogenesis requires that the apocytochrome and heme be transported separately to their site of function and assembly. In bacteria, this is outside the cytoplasmic membrane, whereby the apocytochromes c use sec-dependent signals for their translocation. Two different hypotheses have recently emerged as to how heme is exported: one involves an helABCD-encoded ATP binding cassette (ABC) transporter complex and the second does not. The second hypothesis concludes that an (HelAB)2 heterodimeric ABC transporter does not transport heme but some other substrate for cytochrome c biogenesis. The evidence supporting each of these two hypotheses and the role of this ABC transporter is discussed.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Bacterial Proteins , Cytochrome c Group/biosynthesis , Heme/metabolism , Hemeproteins/metabolism
5.
J Bacteriol ; 183(2): 637-43, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11133958

ABSTRACT

The phototrophic nonsulfur purple bacterium Rhodobacter capsulatus can use urea as a sole source of nitrogen. Three transposon Tn5-induced mutations (Xan-9, Xan-10, and Xan-19), which led to a Ure(-) phenotype, were mapped to the ureF and ureC genes, whereas two other Tn5 insertions (Xan-20 and Xan-22) were located within the ntrC and ntrB genes, respectively. As in Klebsiella aerogenes and other bacteria, the genes encoding urease (ureABC) and the genes required for assembly of the nickel metallocenter (ureD and ureEFG) are clustered in R. capsulatus (ureDABC-orf136-ureEFG). No homologues of Orf136 were found in the databases, and mutational analysis demonstrated that orf136 is not essential for urease activity or growth on urea. Analysis of a ureDA-lacZ fusion showed that maximum expression of the ure genes occurred under nitrogen-limiting conditions (e.g., serine or urea as the sole nitrogen source), but ure gene expression was not substrate (urea) inducible. Expression of the ure genes was strictly dependent on NtrC, whereas sigma(54) was not essential for urease activity. Expression of the ure genes was lower (by a factor of 3.5) in the presence of ammonium than under nitrogen-limiting conditions, but significant transcription was also observed in the presence of ammonium, approximately 10-fold higher than in an ntrC mutant background. Thus, ure gene expression in the presence of ammonium also requires NtrC. Footprint analyses demonstrated binding of NtrC to tandem binding sites upstream of the ureD promoter. Phosphorylation of NtrC increased DNA binding by at least eightfold. Although urea is effectively used as a nitrogen source in an NtrC-dependent manner, nitrogenase activity was not repressed by urea.


Subject(s)
Bacterial Proteins/genetics , DNA-Binding Proteins/metabolism , Rhodobacter capsulatus/genetics , Trans-Activators , Transcription Factors/metabolism , Urea/metabolism , Urease/genetics , Base Sequence , DNA Footprinting , DNA Mutational Analysis , Deoxyribonuclease I/metabolism , Gene Expression Regulation, Bacterial , Molecular Sequence Data , Operon , PII Nitrogen Regulatory Proteins , Protein Binding
6.
Mol Microbiol ; 38(3): 465-81, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11069671

ABSTRACT

Unlike other cytochromes, c-type cytochromes have two covalent bonds formed between the two vinyl groups of haem and two cysteines of the protein. This haem ligation requires specific assembly proteins in prokaryotes or eukaryotic mitochondria and chloroplasts. Here, it is shown that Bordetella pertussis is an excellent bacterial model for the widespread system II cytochrome c synthesis pathway. Mutations in four different genes (ccsA, ccsB, ccsX and dipZ) result in B. pertussis strains unable to synthesize any of at least seven c-type cytochromes. Using a cytochrome c4:alkaline phosphatase fusion protein as a bifunctional reporter, it was demonstrated that the B. pertussis wild-type and mutant strains secrete an active alkaline phosphatase fusion protein. However, unlike the wild type, all four mutants are unable to attach haem covalently, resulting in a degraded N-terminal apocytochrome c4 component. Thus, apocytochrome c secretion is normal in each of the four mutants, but all are defective in a periplasmic assembly step (or export of haem). CcsX is related to thioredoxins, which possess a conserved CysXxxXxxCys motif. Using phoA gene fusions as reporters, CcsX was proven to be a periplasmic thioredoxin-like protein. Both the B. pertussis dipZ (i. e. dsbD) and ccsX mutants are corrected for their assembly defects by the thiol-reducing compounds, dithiothreitol and 2-mercaptoethanesulphonic acid. These results indicate that DipZ and CcsX are required for the periplasmic reduction of the cysteines of apocytochromes c before ligation. In contrast, the ccsA and ccsB mutants are not corrected by exogenous reducing agents, suggesting that CcsA and CcsB are required for the haem ligation step itself in the periplasm (or export of haem to the periplasm). Related to this suggestion, the topology of CcsB was determined experimentally, demonstrating that CcsB has four transmembrane domains and a large 435-amino-acid periplasmic region.


Subject(s)
Bordetella pertussis/enzymology , Bordetella pertussis/genetics , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Escherichia coli Proteins , Genes, Bacterial , Alkaline Phosphatase/genetics , Alkaline Phosphatase/metabolism , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Blotting, Western , Membrane Proteins/genetics , Membrane Proteins/metabolism , Molecular Sequence Data , Oxidoreductases , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sulfhydryl Compounds/metabolism , Thioredoxins/metabolism
7.
Biochemistry ; 39(33): 10172-6, 2000 Aug 22.
Article in English | MEDLINE | ID: mdl-10956006

ABSTRACT

Oxidation-reduction titrations for the active-site disulfide/dithiol couples of the helX- and ccl2-encoded proteins involved in cytochrome c biogenesis in the purple non-sulfur bacterium Rhodobacter capsulatus have been carried out. The R. capsulatus HelX and Ccl2 proteins are predicted to function as part of a dithiol/disulfide cascade that reduces a disulfide on the apocytochromes c so that two cysteine thiols are available to form thioether linkages between the heme prosthetic group and the protein. Oxidation-reduction midpoint potential (E(m)) values, at pH 7.0, of -300 +/- 10 and -210 +/- 10 mV were measured for the HelX and Ccl2 (a soluble, truncated form of Ccl2) R. capsulatus proteins, respectively. Titrations of the disulfide/dithiol couple of a peptide designed to serve as a model for R. capsulatus apocytochrome c(2) have also been carried out, and an E(m) value of -170 +/- 10 mV was measured for the model peptide at pH 7.0. E(m) versus pH plots for HelX, Ccl2, and the apocytochrome c(2) model peptide were all linear over the pH range from 5.0 to 8.0, with the -59 mV/pH unit slope expected for a reaction in which two protons are taken up for each disulfide that is reduced. These results provide thermodynamic support for the proposal that HelX reduces Ccl2 and that reduced Ccl2, in turn, serves as the reductant for the production of the two thiols of the CysXxxYyyCysHis heme-binding motif of the apocytochromes.


Subject(s)
Bacterial Proteins/metabolism , Cytochrome c Group/biosynthesis , Cytochrome c Group/metabolism , Disulfides/metabolism , Membrane Proteins/metabolism , Rhodobacter capsulatus , Bacterial Proteins/genetics , Cysteine/metabolism , Cystine/metabolism , Cytochrome c Group/genetics , Hydrogen-Ion Concentration , Membrane Proteins/genetics , Oxidation-Reduction , Recombinant Proteins/metabolism , Titrimetry
8.
Mol Microbiol ; 33(2): 429-37, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10411758

ABSTRACT

It has been known for over half a century that anoxygenic photosynthetic bacteria maximally synthesize their photosystems in the absence of oxygen. During the last decade, it has become clear that this regulation is largely at the transcriptional level, with photosynthesis genes expressed only under anaerobic conditions. We describe here in vitro reconstitution of activation and repression of three photosynthesis promoters, bch (bacteriochlorophyll biosynthesis), puc (light-harvesting II apoproteins) and puf (reaction centre and light-harvesting I apoproteins) using purified transcription factors and RNA polymerase from Rhodobacter capsulatus. Previous genetic results have indicated that each of these three promoters is differentially regulated by three key regulators: CrtJ acting as a repressor of bch and puc and the two-component regulators RegA/RegB, which are activators of puc and puf. These regulators are distinct from those that mediate oxygen control in enteric bacteria. Our in vitro studies show that these purified regulators directly control the expression of the housekeeping RNA polymerase at these promoters. High-level basal expression of the bch promoter is shown to be repressed by CrtJ. The puc promoter is activated by the RegB-phosphorylated RegA protein and additionally repressed by CrtJ. At the puc promoter, CrtJ effectively competes for promoter binding with RegA, while at the bch promoter, repression appears to be by competition for the RNA polymerase binding site. In contrast to what has been suggested previously, the RegA-activated puf promoter is demonstrated as being recognized by the housekeeping RNA polymerase. We also discuss evidence that RegA approximately P activation of the puc and puf promoters involves recruitment of RNA polymerase by different modes of protein-protein interaction.


Subject(s)
Bacterial Proteins , Gene Expression Regulation, Bacterial , Photosynthesis/genetics , Protein Kinases , Rhodobacter capsulatus/genetics , Base Sequence , DNA, Bacterial/chemistry , DNA, Bacterial/metabolism , Electrophoresis, Polyacrylamide Gel , Light-Harvesting Protein Complexes , Molecular Sequence Data , Phosphoprotein Phosphatases/genetics , Photosynthetic Reaction Center Complex Proteins/metabolism , Promoter Regions, Genetic , Trans-Activators/metabolism , Transcription, Genetic
9.
Mol Microbiol ; 29(2): 383-96, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9720859

ABSTRACT

The past 10 years have heralded remarkable progress in the understanding of the biogenesis of c-type cytochromes. The hallmark of c-type cytochrome synthesis is the covalent ligation of haem vinyl groups to two cysteinyl residues of the apocytochrome (at a Cys-Xxx-Yyy-Cys-His signature motif). From genetic, genomic and biochemical studies, it is clear that three distinct systems have evolved in nature to assemble this ancient protein. In this review, common principles of assembly for all systems and the molecular mechanisms predicted for each system are summarized. Prokaryotes, plant mitochondria and chloroplasts use either system I or II, which are each predicted to use dedicated mechanisms for haem delivery, apocytochrome ushering and thioreduction. Accessory proteins of systems I and II co-ordinate the positioning of these two substrates at the membrane surface for covalent ligation. The third system has evolved specifically in mitochondria of fungi, invertebrates and vertebrates. For system III, a pivotal role is played by an enzyme called cytochrome c haem lyase (CCHL) in the mitochondrial intermembrane space.


Subject(s)
Chloroplasts/metabolism , Cytochrome c Group/genetics , Cytochrome c Group/metabolism , Eukaryotic Cells/metabolism , Prokaryotic Cells/metabolism , Apoproteins/metabolism , Biological Transport , Cell Membrane/metabolism , Cytochromes c , Evolution, Molecular , Heme/metabolism , Mitochondria/metabolism , Oxidation-Reduction
10.
Schweiz Med Wochenschr ; 128(16): 616-22, 1998 Apr 18.
Article in German | MEDLINE | ID: mdl-9611304

ABSTRACT

436 patients from two different clinics of internal medicine and one orthopaedic unit were asked to fill a questionnaire on their attitude towards and use of alternative medicine. Of the 272 questionnaires returned, 235 could be used for analysis. 42.6% of all analysed persons confirmed use of alternative medicine. About half of them were motivated to do so by their nursing staff. Homeopathy was by far the most frequently used method. Persons who used alternative medicine were characterised by a distinct environmental awareness and regular sports activity. They had also often had positive experience of alternative methods in childhood. On the other hand, age, sex, education, duration of the treated disease and success of conventional therapy did not correlate significantly with the use of alternative medicine. An essential motive for the need to seek help by alternative therapists was the opinion that conventional forms of treatment would concentrate too much on the purely physical side of a health problem. All in all, users of alternative medicine did not seek confrontation with conventional medicine but rather sought a real complement to conventional forms of treatment.


Subject(s)
Attitude to Health , Complementary Therapies , Motivation , Patient Acceptance of Health Care/psychology , Adult , Aged , Child , Female , Health Behavior , Health Education , Humans , Internal Medicine , Male , Middle Aged , Orthopedics
11.
Proc Natl Acad Sci U S A ; 95(9): 5003-8, 1998 Apr 28.
Article in English | MEDLINE | ID: mdl-9560218

ABSTRACT

Heme proteins play pivotal roles in a wealth of biological processes. Despite this, the molecular mechanisms by which heme traverses bilayer membranes for use in biosynthetic reactions are unknown. The biosynthesis of c-type cytochromes requires that heme is transported to the bacterial periplasm or mitochondrial intermembrane space where it is covalently ligated to two reduced cysteinyl residues of the apocytochrome. Results herein suggest that a family of integral membrane proteins in prokaryotes, protozoans, and plants act as transmembrane heme delivery systems for the biogenesis of c-type cytochromes. The complete topology of a representative from each of the three subfamilies was experimentally determined. Key histidinyl residues and a conserved tryptophan-rich region (designated the WWD domain) are positioned at the site of cytochrome c assembly for all three subfamilies. These histidinyl residues were shown to be essential for function in one of the subfamilies, an ABC transporter encoded by helABCD. We believe that a directed heme delivery pathway is vital for the synthesis of cytochromes c, whereby heme iron is protected from oxidation via ligation to histidinyl residues within the delivery proteins.


Subject(s)
ATP-Binding Cassette Transporters/chemistry , Heme/metabolism , Hemeproteins/chemistry , Membrane Proteins/chemistry , Nuclear Proteins/chemistry , Plant Proteins , Proteins/chemistry , Protozoan Proteins , Amino Acid Sequence , Bacterial Proteins/chemistry , Biological Transport , Cell Membrane/metabolism , Cell Membrane/ultrastructure , Chloroplasts/chemistry , Histidine , Molecular Sequence Data , Recombinant Proteins , Sequence Alignment , Structure-Activity Relationship , Tryptophan
12.
J Mol Biol ; 278(5): 903-14, 1998 May 22.
Article in English | MEDLINE | ID: mdl-9600852

ABSTRACT

The Rhodobacter capsulatus NtrC protein is a bacterial enhancer-binding protein that activates the transcription of at least five genes by a mechanism that does not require the RpoN RNA polymerase sigma factor. The nifR3-ntrB-ntrC operon in R. capsulatus codes for the nitrogen-sensing two component regulators NtrB and NtrC, as well as for NifR3, a protein of unknown function that is highly conserved in both prokaryotes and eukaryotes. Evidence of a unique translational control of NifR3 mediated directly by the NtrC enhancer-binding protein is reported. The nifR3-ntrB-ntrC operon is expressed from a single promoter upstream of nifR3 with the levels of transcript equivalent in wild-type and ntrC mutants under nitrogen-limited or nitrogen-sufficient conditions. LacZ reporter analyses of this operon and immunological quantitation of NifR3 and NtrC demonstrate that, unlike NtrC levels which remain constant, production of NifR3 is at least ten to 40-fold reduced in NtrC- strains. NifR3 is increased at least fivefold upon nitrogen limitation whereas NtrC production is constitutive. Surprisingly, the purified NtrC protein binds cooperatively to the nifR3 promoter region in vitro at two sets of tandem binding sites centered at +1 and -81 nucleotides relative to the transcriptional start site. Deletion analysis demonstrates that the upstream tandem sites are essential for nitrogen and NtrC-dependent production of NifR3 in vivo , but are not necessary for nifR3 transcription. These experiments indicate that NtrC stimulates the translation of the NifR3 messenger RNA while tethered to the promoter DNA. This is in contrast to five other promoters (nifA1, nifA2, glnB, mopA and anfA) in R. capsulatus which are transcriptionally activated by NtrC bound to one set of tandem binding sites that are centered greater than 100 bp upstream of the transcriptional start site.


Subject(s)
Bacterial Proteins/metabolism , DNA-Binding Proteins/physiology , Enhancer Elements, Genetic , Gene Expression Regulation, Bacterial , Protein Biosynthesis , Rhodobacter capsulatus/genetics , Trans-Activators , Transcription Factors , Base Sequence , DNA, Bacterial , DNA-Binding Proteins/biosynthesis , Genes, Bacterial , Molecular Sequence Data , Nitrogen/metabolism , Nitrogen Fixation/genetics , PII Nitrogen Regulatory Proteins , Promoter Regions, Genetic , Protein Binding , Transcription, Genetic
13.
Genes Dev ; 12(12): 1884-93, 1998 Jun 15.
Article in English | MEDLINE | ID: mdl-9637689

ABSTRACT

A commonly accepted view of gene regulation in bacteria that has emerged over the last decade is that promoters are transcriptionally activated by one of two general mechanisms. The major type involves activator proteins that bind to DNA adjacent to where the RNA polymerase (RNAP) holoenzyme binds, usually assisting in recruitment of the RNAP to the promoter. This holoenzyme uses the housekeeping sigma70 or a related factor, which directs the core RNAP to the promoter and assists in melting the DNA near the RNA start site. A second type of mechanism involves the alternative sigma factor (called sigma54 or sigmaN) that directs RNAP to highly conserved promoters. In these cases, an activator protein with an ATPase function oligomerizes at tandem sites far upstream from the promoter. The nitrogen regulatory protein (NtrC) from enteric bacteria has been the model for this family of activators. Activation of the RNAP/sigma54 holoenzyme to form the open complex is mediated by the activator, which is tethered upstream. Hence, this class of protein is sometimes called the enhancer binding protein family or the NtrC class. We describe here a third system that has properties of each of these two types. The NtrC enhancer binding protein from the photosynthetic bacterium, Rhodobacter capsulatus, is shown in vitro to activate the housekeeping RNAP/sigma70 holoenzyme. Transcriptional activation by this NtrC requires ATP binding but not hydrolysis. Oligomerization at distant tandem binding sites on a supercoiled template is also necessary. Mechanistic and evolutionary questions of these systems are discussed.


Subject(s)
Adenosine Triphosphate/pharmacology , Bacterial Proteins/physiology , DNA, Superhelical/metabolism , DNA-Binding Proteins/physiology , DNA-Directed RNA Polymerases/metabolism , Enhancer Elements, Genetic , Trans-Activators , Transcription Factors , Adenosine Triphosphate/metabolism , Bacterial Proteins/genetics , Base Sequence , Binding Sites/genetics , Binding Sites/physiology , DNA, Superhelical/genetics , DNA-Directed RNA Polymerases/genetics , Enterobacteriaceae/enzymology , Enterobacteriaceae/genetics , Enzyme Activation/genetics , Enzyme Activation/physiology , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Hydrolysis , Molecular Sequence Data , PII Nitrogen Regulatory Proteins , Protein Binding , Repetitive Sequences, Nucleic Acid/genetics , Repetitive Sequences, Nucleic Acid/physiology , Rhodobacter capsulatus/enzymology , Rhodobacter capsulatus/genetics , Sequence Homology, Nucleic Acid , Sigma Factor/metabolism , Transcriptional Activation/genetics , Transcriptional Activation/physiology
15.
J Bacteriol ; 179(24): 7869-71, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9401049

ABSTRACT

The HelA protein of Rhodobacter capsulatus is the ATP-binding-cassette subunit of an exporter complex required for cytochrome c biogenesis. By primary sequence comparisons the F88 residue of HelA is similar to the F508 residue of the cystic fibrosis transmembrane regulator (CFTR) protein. Previous studies have established that CFTR F508delta or F508R proteins are defective but F508C is functional. Our results demonstrate that the HelA F88 mutants functionally mimic the phenotypes of known CFTR F508 mutants. The phenotypes of additional HelA mutants and the in vivo steady-state levels of these proteins are also reported.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Bacterial Proteins , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Rhodobacter capsulatus/genetics , Amino Acid Sequence , Molecular Mimicry , Molecular Sequence Data , Mutation , Phenotype , Sequence Homology, Amino Acid
16.
J Bacteriol ; 179(23): 7264-73, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9393689

ABSTRACT

The fnr gene encodes a regulatory protein involved in the response to oxygen in a variety of bacterial genera. For example, it was previously shown that the anoxygenic, photosynthetic bacterium Rhodobacter sphaeroides requires the fnrL gene for growth under anaerobic, photosynthetic conditions. Additionally, the FnrL protein in R. sphaeroides is required for anaerobic growth in the dark with an alternative electron acceptor, but it is not essential for aerobic growth. In this study, the fnrL locus from Rhodobacter capsulatus was cloned and sequenced. Surprisingly, an R. capsulatus strain with the fnrL gene deleted grows like the wild type under either photosynthetic or aerobic conditions but does not grow anaerobically with alternative electron acceptors such as dimethyl sulfoxide (DMSO) or trimethylamine oxide. It is demonstrated that the c-type cytochrome induced upon anaerobic growth on DMSO is not synthesized in the R. capsulatus fnrL mutant. In contrast to wild-type strains, R. sphaeroides and R. capsulatus fnrL mutants do not synthesize the anaerobically, DMSO-induced reductase. Mechanisms that explain the basis for FnrL function in both organisms are discussed.


Subject(s)
Bacterial Proteins/genetics , Genes, Bacterial , Rhodobacter capsulatus/genetics , Trans-Activators , Amino Acid Sequence , Anaerobiosis , Base Sequence , Cloning, Molecular , Cytochrome c Group/biosynthesis , Darkness , Dimethyl Sulfoxide/metabolism , Gene Deletion , Gene Expression Regulation, Bacterial , Genetic Complementation Test , Light , Molecular Sequence Data , Mutation , Oxidation-Reduction , Oxygen/pharmacology , Photosynthesis , Photosynthetic Reaction Center Complex Proteins/biosynthesis , Rhodobacter capsulatus/radiation effects , Rhodobacter sphaeroides/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid
17.
J Biol Chem ; 272(43): 27266-73, 1997 Oct 24.
Article in English | MEDLINE | ID: mdl-9341173

ABSTRACT

To begin to characterize biochemically the transcriptional activation systems in photosynthetic bacteria, the Rhodobacter capsulatus RNA polymerase (RNAP) that contains the sigma70 factor (R. capsulatus RNAP/sigma70) was purified and characterized using two classical sigma70 type promoters, the bacteriophage T7A1 and the RNA I promoters. Transcription from these promoters was sensitive to rifampicin, RNase, and monoclonal antibody 2G10 (directed against the Escherichia coli sigma70 subunit). Specific transcripts were detected in vitro for R. capsulatus cytochrome c2 (cycA) and fructose-inducible (fruB) promoters and genes induced in photosynthesis (puf and puc) and bacteriochlorophyll biosynthesis (bchC). Alignment of these natural promoters activated by R. capsulatus RNAP/sigma70 indicated a preference for the sequence TTGAC at the -35 region for strong in vitro transcription. To test the -35 recognition pattern, the R. capsulatus nifA1 promoter, which exhibits only three of the five consensus nucleotides at the -35 region, was mutated to four and five of the consensus nucleotides. Although the nifA1 wild type promoter showed no transcription, the double mutated promoter exhibited high levels of in vitro transcription by the purified R. capsulatus RNAP/sigma70 enzyme. Similarities and differences between the RNAPs and the promoters of R. capsulatus and E. coli are discussed.


Subject(s)
DNA-Directed RNA Polymerases/metabolism , Escherichia coli Proteins , Photosynthesis/genetics , Promoter Regions, Genetic , Rhodobacter capsulatus/enzymology , Sigma Factor/metabolism , Transcription, Genetic , Bacterial Proteins/metabolism , Bacteriochlorophylls/biosynthesis , Carrier Proteins/biosynthesis , Carrier Proteins/genetics , Consensus Sequence , Cytochrome c Group/biosynthesis , Cytochrome c Group/genetics , Cytochromes c2 , DNA-Directed RNA Polymerases/genetics , DNA-Directed RNA Polymerases/isolation & purification , Escherichia coli/enzymology , Genes, Bacterial , Intracellular Signaling Peptides and Proteins , Polymerase Chain Reaction , Protein Kinases , Rhodobacter capsulatus/genetics , Sequence Alignment , Sigma Factor/genetics , Sigma Factor/isolation & purification
18.
J Bacteriol ; 179(17): 5422-8, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9286996

ABSTRACT

The photosynthetic bacterium Rhodobacter capsulatus synthesizes c-type cytochromes under a variety of growth conditions. For example, under aerobic growth, c-type cytochromes are synthesized as part of an electron transport pathway, using oxygen as the terminal electron acceptor. Anaerobically in the light, R. capsulatus requires cytochrome bc1 and other c-type cytochromes for the photosynthetic electron transport pathway. It is shown here that the ccl1 and ccl2 genes of R. capsulatus are required for the synthesis of all c-type cytochromes, including the cytochrome c' protein of unknown function but of structural similarity to cytochrome b562. Polar and nonpolar mutations constructed in each gene demonstrated that the ccl12 genes form an operon. Expression of the ccl12 genes was examined by using lacZ and phoA fusions as translational reporters. Primer extension analysis was used to determine transcriptional control and the start site of the ccl12 promoter. Finally, antiserum to the Ccl2 protein was used to quantitate levels of Ccl2 under six different growth conditions. The Ccl2 protein is present at 20-fold-higher levels under conditions where oxygen is present. In contrast, other cytochromes c biogenesis proteins, HelA and HelX, previously shown to be part of an helABCDX operon, are at relatively similar levels under these six growth conditions. This discovery is discussed in terms of the physiology and evolution of cytochromes c biogenesis, with particular attention to oxidative environments.


Subject(s)
Cytochrome c Group/biosynthesis , Gene Expression Regulation, Bacterial/physiology , Operon/genetics , Oxygen/pharmacology , Rhodobacter capsulatus/genetics , Aerobiosis , Amino Acid Sequence , Bacterial Proteins/analysis , Base Sequence , Cytochrome c Group/analysis , Genes, Bacterial/genetics , Molecular Sequence Data , Mutation , Promoter Regions, Genetic/genetics , Rhodobacter capsulatus/growth & development , Sequence Deletion , Transcription, Genetic/genetics
19.
J Mol Biol ; 271(5): 679-92, 1997 Sep 05.
Article in English | MEDLINE | ID: mdl-9299319

ABSTRACT

The c-type cytochromes are distinguished from other heme proteins by the covalent ligation of two heme vinyl groups to two cysteine residues on the apoprotein (at a CXXCH domain). The present study was undertaken to elucidate the roles and topological locations of two of the proteins necessary for cytochrome c biogenesis, the HelX and Ccl2 proteins in the Gram-negative bacteria Rhodobacter capsulatus. From their primary sequence, each of these proteins has a CXXC motif that could be involved in the reduction of the cysteine residues of the apocytochromes c, a prerequisite for covalent ligation to the heme. Results of site-directed mutagenesis of HelX and Ccl2 demonstrate that each cysteine residue is required for the in vivo function of the protein. We demonstrate that the native HelX in R. capsulatus is tethered to the cytoplasmic membrane via its uncleaved signal sequence. Ccl2 is tethered by a single transmembrane domain present in the C terminus with the N-terminal two-thirds of the protein in the periplasm. Thus, both CXXC motifs are exposed to the periplasm. The complete HelX protein and the soluble N-terminal portion of Ccl2 (called Ccl2*) were overproduced and purified from periplasmic fractions. The Ccl2* signal sequence is efficiently processed. In vitro studies with these purified proteins indicate that although neither can reduce insulin, HelX can reduce the Ccl2 cysteine residues and the Ccl2 cysteine residues are oxidized by an apocytochrome c peptide containing the CXXCH domain. Revertants of an helX deletion mutant were isolated that regain the ability to make c-type cytochromes (and thus grow photosynthetically); some of these suppressor strains are enhanced for photosynthetic growth by the addition of thio-reducing agents. In contrast, revertants of a ccl2 deletion strain could not be isolated under any condition. These results suggest that the HelX and Ccl2 proteins form a thioreduction pathway (HelX-->Ccl2-->apocytochrome c) whereby Ccl2 function may be highly specific for apocytochromes c while HelX may act as a more general reductant of proteins with vicinal cysteines.


Subject(s)
Bacterial Proteins/metabolism , Cysteine/metabolism , Cytochrome c Group/biosynthesis , Cytochrome c Group/metabolism , Membrane Proteins/metabolism , Rhodobacter capsulatus/metabolism , Amino Acid Sequence , Bacterial Proteins/analysis , Bacterial Proteins/genetics , Cell Membrane/enzymology , Cell Membrane/metabolism , Cytochrome c Group/analysis , Cytochrome c Group/genetics , Dithiothreitol/pharmacology , Escherichia coli/genetics , Genes, Bacterial/genetics , Glutathione/pharmacology , Iodoacetamide/pharmacology , Iodoacetates/pharmacology , Iodoacetic Acid , Lyases/genetics , Membrane Proteins/analysis , Membrane Proteins/genetics , Molecular Sequence Data , Oxidation-Reduction , Protein Sorting Signals , Recombinant Fusion Proteins , Sulfhydryl Reagents/pharmacology
20.
Appl Environ Microbiol ; 63(8): 3010-3, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9251190

ABSTRACT

The photosynthetic bacterium Rhodobacter capsulatus can grow with short- to long-chain fatty acids as the sole carbon source (R. G. Kranz, K. K. Gabbert, T. A. Locke, and M. T. Madigan, Appl. Environ. Microbiol. 63:3003-3009, 1997). Concomitant with growth on fatty acids is the production to high levels of the polyester storage compounds called polyhydroxyalkanoates (PHAs). Here, we describe colony screening and selection systems to analyze the production of PHAs in R. capsulatus. A screen with Nile red dissolved in acetone distinguishes between PHA producers and nonproducers. Unlike the wild type, an R. capsulatus PhaC- strain with the gene encoding PHA synthase deleted is unable to grow on solid media containing high concentrations of certain fatty acids. It is proposed that this deficiency is due to the inability of the PhaC- strain to detoxify the surrounding medium by consumption of fatty acids and their incorporation into PHAs. This fatty acid toxicity phenotype is used in selection for the cloning and characterization of heterologous phaC genes.


Subject(s)
Fatty Acids/metabolism , Polyesters/metabolism , Rhodobacter capsulatus/metabolism , Acetone/metabolism , Acyltransferases/genetics , Cloning, Molecular , Culture Media/metabolism , Rhodobacter capsulatus/genetics , Sequence Deletion
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