Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments.

Seamounts are globally distributed across the oceans and form one of the major oceanic biomes. Here, we utilized combined analyses of bulk metagenome and virome to study viral communities in seamount sediments in the western Pacific Ocean. Phylogenetic analyses and the protein-sharing network demonstrate extensive diversity and previously unknown viral clades. Inference of virus-host linkages uncovers extensive interactions between viruses and dominant prokaryote lineages, and suggests that viruses play significant roles in carbon, sulfur, and nitrogen cycling by compensating or augmenting host metabolisms. Moreover, temperate viruses are predicted to be prevalent in seamount sediments, which tend to carry auxiliary metabolic genes for host survivability. Intriguingly, the geographical features of seamounts likely compromise the connectivity of viral communities and thus contribute to the high divergence of viral genetic spaces and populations across seamounts. Altogether, these findings provides knowledge essential for understanding the biogeography and ecological roles of viruses in globally widespread seamounts.

Phytoplankton community structure and environmental factors during the outbreak of Crown-of-Thorns Starfish in Xisha Islands, South China Sea.

The "larval starvation hypothesis" proposed that the growing frequency of Crown-of-Thorns Starfish (CoTS) outbreaks could be attributed to increased availability of phytoplankton. However, comprehensive field investigation on the living environment of CoTS larvae and the availability of phytoplankton are still lacking. A cruise was conducted in June 2022 in Xisha Islands, South China Sea, to study the interaction between environmental conditions and phytoplankton communities during CoTS outbreak period. The average concentrations of dissolved inorganic phosphorus (0.05 ± 0.01 µmol L-1), dissolved inorganic nitrogen (0.66 ± 0.8 µmol L-1) and chlorophyll a (0.05 ± 0.05 µg L-1) suggested that phytoplankton may be limited for CoTS larvae in Xisha Islands. Microscopic observation and high-throughput sequencing were used to study the composition and structure of the phytoplankton communities. Bacillariophyta predominated in phytoplankton communities with the highest abundance and species richness. 29 dominant species, including 4 species with size-range preferred by CoTS larvae, were identified in Xisha Islands. The diversity index of all stations indicated a species-rich and structure-stable phytoplankton community in Xisha Islands during the period of CoTS outbreak, which may contribute to CoTS outbreak. These findings revealed the structure of phytoplankton community and environmental factors in the study area during CoTS outbreak, providing the groundwork for future research into the causes and processes of CoTS outbreak.

Contrasting Community Assembly Mechanisms Underlie Similar Biogeographic Patterns of Surface Microbiota in the Tropical North Pacific Ocean.

Marine microbiota are critical components of global biogeochemical cycles. However, the biogeographic patterns and ecological processes that structure them remain poorly understood, especially in the oligotrophic ocean. In this study, we used high-throughput sequencing of 16S and 18S rRNA genes to investigate the distribution patterns of bacterial and microeukaryotic communities and their assembly mechanisms in the surface waters of the tropical North Pacific Ocean. The fact that both the bacterial and the microeukaryotic communities showed similar distribution patterns (i.e., similar distance-decay patterns) and were clustered according to their geographic origin (i.e., the western tropical North Pacific and central tropical North Pacific) suggested that there was a significant biogeographic pattern of microbiota in the North Pacific Ocean. Indices of alpha diversity such as species richness, phylogenetic diversity, and the Shannon diversity index also differed significantly between regions. The correlations were generally similar between spatial and environmental variables and the alpha and beta diversities of bacteria and microeukaryotes across the entire region. The relative importance of ecological processes differed between bacteria and microeukaryotes: ecological drift was the principal mechanism that accounted for the structure of bacterial communities; heterogeneous selection, dispersal limitation, and ecological drift collectively explained much of the turnover of the microeukaryote communities. IMPORTANCE Bacteria and microeukaryotes are extremely diverse groups in the ocean, where they regulate elemental cycling and energy flow. Studies of marine microbial ecology have benefited greatly from the rapid progress that has been made in genomic sequencing and theoretical microbial ecology. However, the spatial distribution of marine bacteria and microeukaryotes and the nature of the assembly mechanisms that determine their distribution patterns in oligotrophic marine waters are poorly understood. In this study, we used high-throughput sequencing methods to identify the distribution patterns and ecological processes of bacteria and microeukaryotes in an oligotrophic, tropical ocean. Our study showed that contrasting community assembly mechanisms underlaid similar biogeographic patterns of surface bacterial and microeukaryotic communities in the tropical North Pacific Ocean.