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Biosci Biotechnol Biochem ; 72(1): 116-23, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18175898

ABSTRACT

A 7.1-kbp DNA fragment isolated from a wild strain of Klebsiella oxytoca was sequenced, leading to the identification of 10 open-reading frames (ORFs), including a 504-bp Pad gene. The Pad gene of the Gram-negative bacterium was subsequently expressed in Escherichia coli as a chimeric Pad. The deduced amino acid (AA) sequence of the Pad gene from wild-type K. oxytoca showed approximately 50% homology to those of other bacterial PADs from Gram-positive bacilli plus a coccus. These data and a genomic library search of some gamma-proteobacteria, including E. coli and Vibrio sp., indicated that PAD of K. oxytoca is a member of the bacterial PAD family characteristic of Gram-negative bacteria. Using Pad-specific PCR primers designed from the Gram-negative bacterial Pad of K. oxytoca, Pad genes of two further strains of K. oxytoca, another wild isolate and JCM 1665 and two PAD-positive Enterobacter spp. were successfully amplified for specific Pad detection.


Subject(s)
Carboxy-Lyases/genetics , Klebsiella oxytoca/enzymology , Klebsiella oxytoca/genetics , Amino Acid Sequence , Bacterial Proteins/genetics , Conserved Sequence , DNA Primers , Gram-Negative Bacteria/enzymology , Gram-Negative Bacteria/genetics , Gram-Positive Bacteria/enzymology , Gram-Positive Bacteria/genetics , Molecular Sequence Data , Open Reading Frames , Polymerase Chain Reaction , Sequence Alignment , Sequence Homology, Amino Acid , Species Specificity
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