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1.
Indian J Med Microbiol ; 46: 100419, 2023.
Article in English | MEDLINE | ID: mdl-37945113

ABSTRACT

PURPOSE: OXA-48 producing Klebsiella pneumoniae is an emerging threat and outbreaks due to specific sequence types have been commonly reported. Here, we report an outbreak due to multidrug-resistant ST395 K. pneumoniae ST395. To the best of our knowledge, this is the first outbreak of K. pneumoniae ST395 harbouring blaOXA-48 genes in our country. METHODS: The strains were characterized by antimicrobial susceptibility, extended-spectrum ß-lactamase (ESBL) and carbapenemase production, plasmid-mediated colistin, high-level aminoglycoside, and quinolone resistance. Also multidrug efflux pumps and porin coding genes were investigated. Pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST), wzi typing and plasmid analysis were used for the epidemiological relationships. RESULTS: All strains were positive for blaOXA-48 with at least one of the ß-lactamase genes (blaCTX-M, blaTEM, blaSHV) and harboured IncL plasmids. 16 of 20 (80%) isolates carried qnrA. All isolates were positive for aac(6')-1b, acrAB-tolC, ompK35, and ompK36 genes but none of them harboured 16s rRNA methyltransferase, mcr-1-5, qepA, oqxAB, and mdtK genes. All strains had the same PFGE pattern, that is, wzi type K2 and found to be ST395 with MLST. CONCLUSION: The association of ST395 with OXA-48-producers could be an emerging threat for Turkey and continuous monitoring is crucial to prevent the spread of these powerful strains.


Subject(s)
Carbapenems , Klebsiella Infections , Humans , Carbapenems/pharmacology , Colistin/pharmacology , Klebsiella pneumoniae/genetics , Multilocus Sequence Typing/methods , Turkey/epidemiology , RNA, Ribosomal, 16S , Klebsiella Infections/epidemiology , Klebsiella Infections/drug therapy , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , beta-Lactamases/genetics , Microbial Sensitivity Tests
2.
East Mediterr Health J ; 28(10): 768-775, 2022 Oct 30.
Article in English | MEDLINE | ID: mdl-36382732

ABSTRACT

Background: The detection of hepatitis B surface antigen positivity in pregnant women before delivery is crucial to preventing mother-to-child transmission of hepatitis B virus. Aims: This study aimed to evaluate the status and rate of testing for hepatitis B surface antigen, rate of hepatitis B surface antigen positivity, hepatitis B surface antigen positivity distribution rate by age, and changes in hepatitis B surface antigen positivity rate in pregnant women over the study period. Methods: We conducted a multicentre, cross-sectional, descriptive study covering the period January 2005 to June 2019 for 2 145 668 pregnant women from 27 provinces in all 7 regions of Turkey, collected using Microsoft Excel before statistical analysis. Results: We found that 1 012 593 (47.1%) pregnant women were tested for hepatitis B surface antigen over the 15-year period, out of which 11 471 (1.1%) were hepatitis B surface antigen-positive. Overall, 97% of the hepatitis B surface antigen positive women were born before 1998, the year that national HBV vaccination was launched in Turkey. The rate of hepatitis B surface antigen positivity in that group was 1.1%, compared with 0.3% among women born after 1998. Conclusion: There was a downward trend in the hepatitis B surface antigen positivity rate among pregnant women in the younger age groups, especially among those born after universal hepatitis B vaccination was inaugurated, and low rate of HBsAg testing during pregnancy.


Subject(s)
Hepatitis B , Pregnancy Complications, Infectious , Female , Pregnancy , Humans , Hepatitis B Surface Antigens , Infectious Disease Transmission, Vertical/prevention & control , Hepatitis B/epidemiology , Hepatitis B/prevention & control , Hepatitis B/diagnosis , Pregnancy Complications, Infectious/epidemiology , Pregnancy Complications, Infectious/prevention & control , Pregnant Women , Cross-Sectional Studies , Turkey/epidemiology , Hepatitis B virus , Vaccination , Hepatitis B Vaccines
3.
North Clin Istanb ; 8(4): 359-364, 2021.
Article in English | MEDLINE | ID: mdl-34585070

ABSTRACT

OBJECTIVE: Hepatitis B virus (HBV) infection remains a global public health problem. Among its modes of transmission, vertical transmission from mother to child during pregnancy is exceedingly important. This study investigated seropositivity for hepatitis B surface antigen (HBsAg) among pregnant women aged 16-49 years and their pregnancy outcomes in several health institutions (university and state hospitals, family health centers) from seven cities in Turkey. METHODS: An Excel form was sent to the sites participating in the study, and the total number of pregnant women who were tested for HBsAg between 2010 and 2017, HBsAg positivity rates, and the ages of HBsAg-positive pregnant women was collected retrospectively. Serum samples were obtained from 204,865 pregnant women from four regions between 2010 and 2017, including 107,463 from Black Sea, 2306 from Marmara, 48,339 from East Anatolia, and 46,757 from Aegean. HBsAg levels were determined on automated devices using chemiluminescence. RESULTS: In the study, the data of 204,865 pregnant women from seven different provinces (Afyonkarahisar, Erzurum, Istanbul, Izmir, Manisa, Mus, and Rize) in different geographical regions were accessed, and HBsAg positivity was found in 2343 pregnant women (1.14%). The highest HBsAg seroprevalence was found in women who were older 26-40 years/1977-1991 birth year range on average. In the data of the present study, the number of pregnant women with HBsAg positivity among pregnant women born after the initiation of the national vaccination program and catch-up vaccination program is only 124 and constitutes 5.3% of all HBsAg-positive pregnant women. CONCLUSION: In this study, it has been found that HBsAg positivity in pregnant women has been decreasing in Turkey and that it is significantly lower, especially in those born after the initiation of the national vaccination program. Continuation of national neonatal HBV vaccination with high compliance is very important.

4.
Jpn J Infect Dis ; 73(6): 421-426, 2020 Nov 24.
Article in English | MEDLINE | ID: mdl-33208588

ABSTRACT

Myroides spp. are low-grade opportunistic pathogens. Outbreaks due to Myroides spp. have rarely been described in the literature to date. We report a healthcare-associated outbreak of urinary tract infections (UTIs), caused by Myroides odoratimimus, in a Turkish hospital. As of March 2019 until May 2019, 6 strains of M. odoratimimus were isolated from the urine samples of patients, all of whom were hospitalized in intensive care units. After identification and antibiotic susceptibility testing using the VITEK 2 system, MALDI-TOF-MS and 16S rRNA-based sequencing methods were performed for confirmation and species-level identification. Pulsed-field gel electrophoresis (PFGE) was performed in order to investigate the clonal relatedness of the isolates. All the patients were immunocompromised and underwent urinary catheterization. None of the patients had urinary neoplasm, surgery, or calculi. VITEK 2 and MALDI-TOF-MS systems revealed that the isolates belonged to the Myroides genus; however, the aforementioned systems neglected to identify the isolates at the species level. The isolates were all successfully identified as M. odoratimimus through 16S rRNA-based sequencing. The isolates were resistant to every antibiotic tested. All isolates had an indistinguishable PFGE pattern, thus indicating cross-transmission between cases. Although M. odoratimimus is rarely isolated from human specimens, clinicians should be aware of its ability to cause UTIs and infectious outbreaks.


Subject(s)
Cross Infection/epidemiology , Disease Outbreaks , Flavobacteriaceae Infections/epidemiology , Flavobacteriaceae/isolation & purification , Urinary Tract Infections/epidemiology , Aged , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Cross Infection/drug therapy , Cross Infection/microbiology , Drug Resistance, Multiple, Bacterial , Electrophoresis, Gel, Pulsed-Field/methods , Female , Flavobacteriaceae Infections/drug therapy , Flavobacteriaceae Infections/microbiology , Hospitalization , Humans , Immunocompromised Host , Male , Microbial Sensitivity Tests/methods , Middle Aged , RNA, Bacterial/analysis , RNA, Ribosomal, 16S/analysis , Turkey/epidemiology , Urinary Catheterization/statistics & numerical data , Urinary Tract Infections/drug therapy , Urinary Tract Infections/microbiology
5.
Jpn J Infect Dis ; 2020 May 29.
Article in English | MEDLINE | ID: mdl-32475882

ABSTRACT

Myroides spp. are low-grade opportunistic pathogens. There were only a few outbreaks due to Myroides spp. described in the literature to date. We report a healthcare-associated outbreak of urinary tract infections caused by Myroides odoratimimus in a Turkish hospital. From March to May 2019, six strains of M. odoratimimus were isolated from the urine samples of patients hospitalized in the intensive care units (ICUs). After identification and antibiotic susceptibility testing with VITEK 2 system, MALDI-TOF-MS and 16S rRNA based sequencing methods were performed for confirmation and species level identification. Pulsed-field gel electrophoresis (PFGE) was used to investigate clonal relatedness of the isolates. All the patients were immunocompromised and underwent urinary catheterization. None of them had urinary neoplasm, surgery or calculi. VITEK 2 and MALDI-TOF-MS systems revealed that the isolates belong to the Myroides genus but lacked to identify the isolates at the species level. 16S rRNA based sequencing successfully identified all the isolates as M. odoratimimus. The isolates were resistant to all antibiotics tested. All isolates had indistinguishable PFGE pattern indicating cross-transmission between cases. Although M. odoratimimus is rarely isolated from human specimens, clinicians should be aware of its ability to cause UTIs and outbreaks.

6.
Public Health Nutr ; 23(10): 1677-1683, 2020 07.
Article in English | MEDLINE | ID: mdl-32200764

ABSTRACT

OBJECTIVES: The aim of the current study is to develop a valid and reliable instrument with psychometric qualities to measure effect of social media usage on eating behaviour in university students. DESIGN: A thirty-eight-item draft scale developed by the researchers. After content validity, twenty-two items are remained and was used to collect the data. In the analysis of the data, confirmatory factor analyses were performed to test construct validity. For the reliability of the scale, Cronbach alpha coefficient was calculated for the whole of the scale. SETTING: The participants attended from various departments of different universities in Ankara. PARTICIPANTS: The scale was administered to the study group consisting of 247 university students. RESULTS: Four items that had total correlation value less than 0·40 were removed from scale. The reliability coefficient of the whole eighteen-item scale was found to be 0·928. CONCLUSIONS: It has been shown that the scale developed as a result of the validity and reliability analyses performed for the scale is a valid and reliable measurement tool and can be used in studies.


Subject(s)
Feeding Behavior/psychology , Psychiatric Status Rating Scales/standards , Social Media , Students/psychology , Factor Analysis, Statistical , Female , Humans , Male , Psychometrics , Reproducibility of Results , Universities , Young Adult
7.
J Obstet Gynaecol ; 40(2): 264-269, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31455122

ABSTRACT

We evaluated the effect of combined use of oral oestrogen (E2) and vaginal progesterone (P) to support luteal phase in antagonist intracytoplasmic sperm injection (ICSI) cycles. We analysed data from 176 patients who underwent ICSI cycles with antagonist protocol. P 90 mg vaginal gel once a day and micronised E2 of 4 mg/day, were started from the day of oocyte pick up and continued to the 12th day of embryo transfer. Group 1 (n = 79) patients received E2 + P for luteal phase support. In group 2 (n = 97) patients, only P 90 mg vaginal gel was used for luteal phase support. There were no significant differences between group 1 and group 2 patients in terms of clinical pregnancy rates (PRs) (26.58% vs. 20.62%, p = .352), early pregnancy loss rates (6.33% vs. 6.19%, p = .969), incidence of luteal vaginal bleeding (8.86% vs. 8.25%, p = .885) and implantation rates (22.8% vs. 16.9%, p = .298). In conclusion, our study showed no beneficial effect of addition of E2 to luteal phase support on clinical PR in antagonist IVF cycles.Impact statementWhat is already known on this subject? Luteal phase deficiency is defined as a disruption in progesterone and oestrogen production after ovulation. It is clear that, luteal phase supplementation to improve the outcomes in in vitro fertilisation (IVF) cycles is mandatory. As an iatrogenic complication of assisted reproductive technique, decreased luteal oestrogen and progesterone levels lead to decreased pregnancy rates (PRs) and implantation rates.What the results of this study add? In this study, we aimed to present the role of luteal phase oestrogen administration in GnRH antagonist cycles. A total of 176 cases received progesterone vaginal gel form for luteal phase support. Study group received 4 mg oral oestradiol hemihydrate in addition to progesterone. Compared to previous studies, our study consisted of larger number of patients and we used oestradiol through oral route. We found out that luteal oestradiol support did not improve the clinical PR.What the implications are of these findings for clinical practice and/or further research? Our study showed no beneficial effect of addition of oestradiol to luteal phase support on clinical PR in antagonist IVF cycles.


Subject(s)
Estradiol/administration & dosage , Estrogens/administration & dosage , Luteal Phase/drug effects , Progesterone/administration & dosage , Progestins/administration & dosage , Sperm Injections, Intracytoplasmic/methods , Abortion, Spontaneous/epidemiology , Abortion, Spontaneous/etiology , Administration, Intravaginal , Adult , Case-Control Studies , Drug Therapy, Combination , Embryo Implantation , Female , Gonadotropin-Releasing Hormone/antagonists & inhibitors , Hormone Antagonists , Humans , Pregnancy , Pregnancy Rate , Sperm Injections, Intracytoplasmic/adverse effects , Treatment Outcome , Uterine Hemorrhage/chemically induced , Uterine Hemorrhage/epidemiology
8.
Med Hypotheses ; 135: 109472, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31760248

ABSTRACT

White blood cells (WBC) are important parts of our immune system and they protect our body against infections by eliminating viruses, bacteria, parasites and fungi. There are five types of WBC. These are called Lymphocytes, Monocytes, Eosinophils, Basophils and Neutrophils. The number of WBC types and the total number of WBCs provide important information about our health status. Diseases such as leukemia, AIDS, autoimmune diseases, immune deficiencies, blood diseases can be diagnosed based on the number of WBCs. In this study, a computer-aided automated system that can easily identify and locate WBC types in blood images has been proposed. Current blood test devices usually detect WBCs with traditional image processing methods such as preprocessing, segmentation, feature extraction, feature selection and classification. Deep learning methodology is superior to traditional image processing methods in literature. In addition, traditional methods require the appearance of the whole object to be able to recognize objects. Contrary to traditional methods, convolutional neural networks (CNN), a deep learning architecture, can extract features from a part of an object and perform object recognition. In this case, a CNN-based system shows a higher performance in recognizing partially visible cells for reasons such as overlap or only partial visibility of the image. Therefore, it has been the motivation of this study to increase the performance of existing blood test devices with deep learning method. Blood cells have been identified and classified by Regional Based Convolutional Neural Networks. Designed architectures have been trained and tested by combining BCCD data set and LISC data set. Regional Convolutional Neural Networks (R - CNN) has been used as a methodology. In this way, different cell types within the same image have been classified simultaneously with a detector. While training CNN which is the basis of R - CNN architecture; AlexNet, VGG16, GoogLeNet, ResNet50 architectures have been tested with full learning and transfer learning. At the end of the study, the system has showed 100% success in determining WBC cells. ResNet50, one of the CNN architectures, has showed the best performance with transfer learning. Cell types of Lymphocyte were determined with 99.52% accuracy rate, Monocyte with 98.40% accuracy rate, Basophil with 98.48% accuracy rate, Eosinophil with 96.16% accuracy rate and Neutrophil with 95.04% accuracy rate.


Subject(s)
Leukocytes/classification , Leukocytes/cytology , Neural Networks, Computer , Pattern Recognition, Automated , Algorithms , Deep Learning , Diagnosis, Computer-Assisted/methods , Eosinophils , Humans , Image Processing, Computer-Assisted , Lymphocytes , Monocytes , Neutrophils , Reproducibility of Results , Sensitivity and Specificity , Software
9.
Sensors (Basel) ; 19(9)2019 Apr 28.
Article in English | MEDLINE | ID: mdl-31035406

ABSTRACT

Rapid classification of tumors that are detected in the medical images is of great importance in the early diagnosis of the disease. In this paper, a new liver and brain tumor classification method is proposed by using the power of convolutional neural network (CNN) in feature extraction, the power of discrete wavelet transform (DWT) in signal processing, and the power of long short-term memory (LSTM) in signal classification. A CNN-DWT-LSTM method is proposed to classify the computed tomography (CT) images of livers with tumors and to classify the magnetic resonance (MR) images of brains with tumors. The proposed method classifies liver tumors images as benign or malignant and then classifies brain tumor images as meningioma, glioma, and pituitary. In the hybrid CNN-DWT-LSTM method, the feature vector of the images is obtained from pre-trained AlexNet CNN architecture. The feature vector is reduced but strengthened by applying the single-level one-dimensional discrete wavelet transform (1-D DWT), and it is classified by training with an LSTM network. Under the scope of the study, images of 56 benign and 56 malignant liver tumors that were obtained from Firat University Research Hospital were used and a publicly available brain tumor dataset were used. The experimental results show that the proposed method had higher performance than classifiers, such as K-nearest neighbors (KNN) and support vector machine (SVM). By using the CNN-DWT-LSTM hybrid method, an accuracy rate of 99.1% was achieved in the liver tumor classification and accuracy rate of 98.6% was achieved in the brain tumor classification. We used two different datasets to demonstrate the performance of the proposed method. Performance measurements show that the proposed method has a satisfactory accuracy rate at the liver tumor and brain tumor classifying.


Subject(s)
Brain Neoplasms/classification , Liver Neoplasms/classification , Neural Networks, Computer , Wavelet Analysis , Brain Neoplasms/diagnosis , Glioma/pathology , Humans , Liver Neoplasms/diagnosis , Meningioma/pathology , Pituitary Neoplasms/pathology , Sensitivity and Specificity , Support Vector Machine , Tomography, X-Ray Computed
10.
J Infect Dev Ctries ; 13(11): 992-1000, 2019 11 30.
Article in English | MEDLINE | ID: mdl-32087071

ABSTRACT

INTRODUCTION: The aim of this study was to investigate the presence of carbapenemase production and carbapenem resistance mechanisms in 47 carbapenem resistant Klebsiella pneumoniae isolates by phenotypic confirmatory tests and molecular assay. METHODOLOGY: Carbapenem resistance genes KPC, OXA-48 and NDM were investigated with the BD MAX CRE assay kit in the BD MAX real time PCR instrument. Modified Hodge test, MBL gradient strip test, D70C Carbapenemase Detection Set, Temocillin gradient strip test methods were used as phenotypic confirmatory tests. Clonal relationship between study isolates was investigated with pulsed-field gel electrophoresis. RESULTS: Analysis with BD MAX CRE assay revealed OXA-48 positivity in 17 (36%) strains, NDM positivity in 6 (13%) strains and coexistence of OXA-48 + NDM positivity in 8 (17%) strains. In 16 (34%) strains, none of the KPC, OXA-48 and NDM genes were detected. While MHT was the most sensitive phenotypic confirmatory test, D70C disc set had not been considered as a useful tool to assist the search for carbapenemase production. Temocillin gradient test alone could not be considered as sufficient to detect the presence of OXA-48. PFGE analyses revealed that 23 of 31 carbapenemase producing strains were in three major PFGE genotypes (A, B and C). CONCLUSIONS: This study revealed that carbapenem resistance observed in K. pneumoniae isolates was mainly due to OXA-48 and NDM genes and the increase of carbapenem resistance among K. pneumoniae strains in our hospital was due to the interhospital spread of especially 3 epidemic clones.


Subject(s)
Anti-Bacterial Agents/pharmacology , Carbapenems/pharmacology , Drug Resistance, Bacterial/physiology , Klebsiella pneumoniae/drug effects , Bacterial Proteins/genetics , Drug Resistance, Bacterial/drug effects , Electrophoresis, Gel, Pulsed-Field , Humans , Klebsiella Infections/microbiology , Klebsiella pneumoniae/genetics , Microbial Sensitivity Tests , Phenotype , beta-Lactamases/genetics
11.
Dent Med Probl ; 55(3): 233-240, 2018.
Article in English | MEDLINE | ID: mdl-30328299

ABSTRACT

BACKGROUND: Cone beam computed tomography (CBCT) allows a detailed visualization of the anatomic structures of the jaw. There have been presented variations of the anatomic structures between genders after evaluating the structures in detail. OBJECTIVES: The aim of this study was to investigate the anatomic variations of the jaws according to gender and age in an effort to avoid complications during implant surgeries. MATERIAL AND METHODS: In this retrospective study, a total of 159 scans (87 of the maxilla, 72 of the mandible) were evaluated in order to analyze the effect of age and gender on these anatomic variations. RESULTS: According to statistical analysis, gender affected the crestal dimensions above the mandibular canal and sinus mucosal thickening. The mean value of the width of the mandibular canal, the distance between the mandibular canal and the superior border of the mandible, the distance between the mandibular canal and the inferior border of the mandible, the diameter of the mental foramen, the distance between the mental foramen and the inferior border of the mandible, and the distance between the lingual foramen and the inferior border of the mandible were significantly greater in female patients than in male subjects (p < 0.001). However, sinus mucosal thickening and the diameter of the posterior superior alveolar artery (PSAA) were significantly greater in males as compared to females (p < 0.001). While the configuration of the nasopalatine canal was funnel-shaped in female patients, this configuration was found to be cylinder-shaped in male subjects. A high prevalence of sinus septa (43.7%) and PSAA (87.4%) was detected in the scans. CONCLUSIONS: When planning dental implants, radiographic examinations, alongside clinical examinations, have become necessary to reduce the risk of implant surgery failure and complications. The CBCT imaging is a valuable tool to determine the anatomic structures before carrying out any surgeries, including implant surgery. Gender affects anatomical variations and dimensions significantly, even when they are not affected by age. Large population focused and multicenter studies may provide a better understanding of the need to evaluate the anatomical structures in detail.


Subject(s)
Cone-Beam Computed Tomography , Mandible/diagnostic imaging , Maxilla/diagnostic imaging , Preoperative Care , Dental Implants , Female , Humans , Male , Mandible/anatomy & histology , Maxilla/anatomy & histology , Maxillary Artery/diagnostic imaging , Middle Aged , Retrospective Studies , Sex Characteristics
12.
Turk J Med Sci ; 48(4): 750-758, 2018 Aug 16.
Article in English | MEDLINE | ID: mdl-30119150

ABSTRACT

Background/aim: We aimed to investigate whether oocyte morphologic abnormalities affected cycle outcome in poor responder infertile women who fulfilled the Bologna criteria. Materials and methods: Data were obtained from infertile couples who underwent ICSI and embryo transfer at the Zeynep Kamil Maternity and Children's Health Training and Research Hospital Assisted Reproduction Unit in Istanbul, Turkey. They were allocated to two groups: Group A, poor responders, and Group B, normal responders. All morphological abnormalities of oocytes retrieved were reviewed and grouped as cytoplasmic abnormalities or extracytoplasmic abnormalities. All morphological features were compared between the poor and normal responder groups. ICSI cycle outcomes were described as biochemical pregnancy, fertilization rate, number of top-quality zygotes, top-quality zygote rate, number of embryos transferred, and number of top-quality embryos transferred. The relation between each morphological feature and ICSI outcomes was investigated in each group. Results: The results showed no difference between the groups in terms of morphological features of oocytes. The relation between ICSI cycle outcomes and each oocyte morphological feature was compared in the poor and normal responder groups. Presence of cytoplasmic morphological abnormality was found to significantly correlate with the fertilization rate (P = 0.019) in poor responders. Conclusion: Our data show that oocyte cytoplasmic abnormalities significantly reduce fertilization achievement in poor responders.


Subject(s)
Embryo Transfer , Fertilization , Infertility, Female/pathology , Oocytes/pathology , Sperm Injections, Intracytoplasmic , Adult , Cytoplasm/pathology , Female , Hospitals , Humans , Ovulation , Pregnancy , Turkey , Zygote
13.
Arch Med Sci ; 14(4): 851-859, 2018 Jun.
Article in English | MEDLINE | ID: mdl-30002704

ABSTRACT

INTRODUCTION: This study aims to compare the association between the most commonly used ovarian responsiveness markers - age, anti-Müllerian hormone levels (AMH), antral follicle count (AFC), ovarian sensitivity index (OSI), and ovarian response prediction index (ORPI) - and ovarian responsiveness to gonadotropin stimulation in assisted reproductive technology (ART) cycles. MATERIAL AND METHODS: Patients who underwent intracytoplasmic sperm injection treatment using either a gonadotropin releasing hormone (GnRH) antagonist or agonist protocol were enrolled in the study. Data of the patients were abstracted from the hospital's database. Tests were compared for total number of retrieved oocytes, metaphase II (MII) oocytes, embryos, good quality embryos on day 1 and day 3, and ongoing pregnancies per cycle. RESULTS: The OSI was the ovarian response test that had the strongest relationship with the ART outcomes. The level of association between the ovarian response tests and poor ovarian response data was (in descending order): OSI, ORPI, AFC, AMH, and age (AUCOSI = 0.976, AUCORPI = 0.905, AUCAFC = 0.899, AUCAMH = 0.864, AUCage = 0.617). The overall association between OSI and poor ovarian response was significantly higher than the other parameters (p1 = 0.0023, p2 = 0.0014, p3 = 0.0001, p4 ≤ 0.0001). In patients with high ovarian response data, OSI had the highest association, followed by AFC and ORPI age (AUCOSI = 0.984, AUCAFC = 0.907, AUCORPI = 0.887). There was no statistically significant difference among the tests for the data of patients with ongoing pregnancies. CONCLUSIONS: In this study, which is the first study comparing the five most frequently used ovarian responsiveness markers and the second study signifying the role of OSI in an antagonist protocol, OSI was found to be more convenient to calculate, and it could be superior to other ovarian responsiveness markers for poor and high ovarian responses on cycles with agonist or antagonist protocols.

14.
Mikrobiyol Bul ; 52(1): 1-12, 2018 Jan.
Article in Turkish | MEDLINE | ID: mdl-29642825

ABSTRACT

The worldwide spread of carbapenemase producing Enterobacteriaceae isolates has become a major threat of public health. This worrisome situation leads the development of new methods for carbapenemase screening, detection, prevention of spread and epidemiological data collection as mandatory. In this study, it was aimed to investigate existence and distribution of carbapenemase-encoding genes (CEGs) among carbapenem-resistant Enterobacteriaceae isolated from various clinical samples in Ankara University Faculty of Medicine, Ibni Sina Hospital, Central Microbiology Laboratory between June 2010-May 2014 and detect their clonal relationship. A total of 112 non-repetitive Enterobacteriaceae isolates which were intermediate or resistant to ertapenem were identified by using Phoenix (BD Diagnostic Systems, Sparks, USA) automated microbiology system. After DNA extraction from the isolates, 11 carbapenemase-encoding genes (CEGs) (blaIMP, blaVIM, blaSPM, blaKPC, blaNDM, blaOXA-48, blaGIM, blaSIM, blaAIM, blaDIM ve blaBIC) were detected with PCR. The clonal relationship among the isolates was determined by PFGE method following digestion with Xbal DNA macrorestriction endonuclease. Among 112 isolates Klebsiella pneumoniae was the most frequent (n= 79, 70.5%) bacteria followed by Escherichia coli (n= 15, 13.4%), Enterobacter cloacae (n= 10, 8.9%), Enterobacter aerogenes (n= 4, 3.6%) and Klebsiella oxytoca (n= 4, 3.6%) respectively. blaOXA-48 was the most frequent gene detected. Among 83 (74.1%) isolates blaOXA-48 was detected alone and in 7 (6.3%) of the isolates it was identified with blaVIM gene coexistence. blaVIM gene was identified as the second most frequent CEG among the isolates. blaVIM gene was detected positive in 9 (8%) isolates. blaNDM gene was identified in 2 (1.8%) isolates. Ten of the K.pneumoniae isolates with identical PFGE pattern were named as pulsotype B. These isolates were found to be similar in terms of isolate location, isolation dates, antibiotic resistance patterns and the carbapenemase genes they carry, and are considered to be potential outbreak isolates originated from intensive care units. On the other hand CEGs were found in the clinical samples obtained from five out-patients suggesting that community-acquired infections may also arise due to carbapenemase producing Enterobacteriaceae in our country where blaOXA-48 producers are endemic. According to this study, blaOXA-48 producing gram negative bacteria were frequent in our hospital. The prevalance of blaVIM gene among metallo-beta-lactamases and coexistence with blaOXA-48 gene was remarkable. The frequency of blaNDM producing isolates in our hospital was not detected as high yet. In this study, the identification of carbapenemase producing bacteria as outbreak strains in our hospital indicated that cross-sectional surveillance for carbapenemase-producing bacteria from each patient was valuable in terms of early diagnosis of outbreaks.


Subject(s)
Bacterial Proteins , Enterobacteriaceae Infections , Enterobacteriaceae , Molecular Epidemiology , beta-Lactamases , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Cross-Sectional Studies , Enterobacteriaceae/drug effects , Enterobacteriaceae/enzymology , Enterobacteriaceae/genetics , Enterobacteriaceae/isolation & purification , Enterobacteriaceae Infections/microbiology , Hospitals, University , Humans , Microbial Sensitivity Tests , beta-Lactamases/genetics
15.
J Craniofac Surg ; 29(5): e467-e471, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29538193

ABSTRACT

OBJECTIVE: Loss of teeth frequently results in compound horizontal and vertical alveolar bone defects. An appropriate bone structure is the key for implant placement and bony support of soft tissues. Advanced bone augmentation techniques are required for the reconstruction of these defects. This report will present a new bone block grafting technique with 12-month follow-up. METHOD: The seedling technique was used to augment the alveolar bone 3-dimensionally with autologous bone block and an osseointegrated implant in a 2-stage procedure. Horizontal and vertical bone loss is revealed after cone beam radiographic examination in the right maxillary lateral incisor area. Initially, the implant was placed at the right maxillary tuber area, where the bone was abundant. After 2-months healing phase, the osseointegrated implant was harvested with the surrounding bone and transplanted to the anterior region of maxilla to augment the horizontal and the vertical components of the recipient site. Transplanted implant inserted into autogenous bone block was fixed with mini plate to the adjacent native bone. Prosthetic restoration was applied 4 months after the transplantation. RESULTS: Seven months after the first surgery, treatment of anterior bone deficiency was accomplished. The patient was fully satisfied with the function and the esthetics of the restoration. The radiological and clinical examinations at 1-year follow-up evaluation showed successful outcome of transplanted autogenous bone block without any resorption. CONCLUSION: This clinical report demonstrated that anterior maxillary single-tooth replacement, according to seedling concept of autogenous bone block with osseointegrated implant, is a successful and predictable treatment modality.


Subject(s)
Alveolar Ridge Augmentation/methods , Bone Transplantation/methods , Dental Implantation, Endosseous/methods , Dental Prosthesis, Implant-Supported , Esthetics, Dental , Female , Follow-Up Studies , Humans , Maxilla/surgery , Middle Aged , Osseointegration
16.
Kardiol Pol ; 76(6): 974-979, 2018.
Article in English | MEDLINE | ID: mdl-29399762

ABSTRACT

BACKGROUND: The frequency of arrhythmic death developing without a structural cardiac disease is higher in women. Also, female sex is an independent risk factor regarding development of torsades de pointes. Several studies have been conducted on the physiological and therapeutic effects of sex hormones on the cardiac conduction system. AIM: In this study we aim to examine the effect of hormonal changes, especially supraphysiological E2 level changes occurring during in vitro fertilisation treatment, on ventricular repolarisation parameters. METHODS: The study included female patients aged between 23 and 39 years, who were administered controlled ovarian hyperstimulation treatment. Patients' electrocardiograms and blood samples were obtained and analysed before and after the ovarian hyperstimulation treatment. RESULTS: Mean QTc intervals before ovarian hyperstimulation were 411.9 ± 23.7 ms. Measurements during oestradiol peak were calculated as 420.7 ± 23.3 ms, and the QTc interval increase was significant (p = 0.007). Corrected QT dispersion averages were not significant before or after hyperstimulation (53 ± 17 ms vs. 54.5 ± 18.2 ms, respectively, p > 0.05). Tp-e, J-T peak, and PR dispersion changes were not significant after the ovarian hyperstimulation therapy. CONCLUSIONS: Supraphysiological oestradiol levels that occur during controlled ovarian hyperstimulation cause prolongation of QTc intervals, but not to a pathological level. Although this prolongation is not significant in healthy individuals, it might increase ventricular arrhythmia risk in patients with congenital long QT syndrome and in patients taking medication that prolongs QT.


Subject(s)
Estrogens/pharmacology , Heart Conduction System/drug effects , Adult , Electrocardiography , Estrogens/metabolism , Heart Ventricles/drug effects , Humans , Male , Ovulation Induction , Young Adult
17.
Gynecol Endocrinol ; 34(6): 524-527, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29258385

ABSTRACT

To compare the effect of the different protocols in patients receiving in vitro fertilization treatment due to poor ovarian response. Seventy-seven of the patients included in the study were treated with gonadotropin (450 IU) + GnRH antagonist (group 1), 84 of the patients were treated with gonadotropin (450 IU) + microdose GnRH analog (group 2), and 53 of the patients were treated with clomiphene citrate (100 mg/day) + gonadotropin (300 IU) + GnRH antagonist (Group 3). In assessing total gonadotropin dosage, patients in Group 3 detected significantly less gonadotropin as compared to the other two groups (p < .001). Group 1 were superior to the other two groups with respect to retrieved oocytes, meiosis II oocytes and number of embryos obtained at the end of the treatment. As for the evaluation of clinical pregnancy, although the highest pregnancy rate was in Group 3, this finding was not of statistical significance. Although increasing the dosage of gonadotropins for ovarian hyper stimulation treatment in patients with poor ovarian response is beneficial with respect to retrieved oocytes, meiosis II oocytes and number of embryos, the increased dosage does not provide a statistically significant increase in clinical pregnancy rates.


Subject(s)
Chorionic Gonadotropin/administration & dosage , Clomiphene/administration & dosage , Fertilization in Vitro/methods , Gonadotropin-Releasing Hormone/analogs & derivatives , Gonadotropin-Releasing Hormone/antagonists & inhibitors , Hormone Antagonists/administration & dosage , Ovulation Induction/methods , Adult , Clinical Protocols , Female , Gonadotropin-Releasing Hormone/administration & dosage , Gonadotropins/administration & dosage , Humans , Oocyte Retrieval , Pregnancy , Pregnancy Rate
18.
Am J Infect Control ; 45(4): 443-447, 2017 Apr 01.
Article in English | MEDLINE | ID: mdl-28063729

ABSTRACT

We described a health care-associated Serratia marcescens outbreak of wound and soft tissue infection lasting approximately 11 months at Ankara University Ibni Sina Hospital. After identification of S marcescens strains from the clinical and environmental samples, and their susceptibility testing to antimicrobial agents, pulsed-field gel electrophoresis (PFGE) was performed to detect molecular epidemiologic relationships among these isolates. The strains which were isolated from the saline bottles used for wound cleansing in the wound care unit were found to be 100% interrelated by PFGE to the strains from the samples of the outbreak patients. Reuse of the emptied bottles has no longer been allowed since the outbreak occurred. Besides, more efficient and frequent infection control training for hospital staff has been conducted.


Subject(s)
Cross Infection/epidemiology , Disease Outbreaks , Serratia Infections/epidemiology , Serratia marcescens/isolation & purification , Soft Tissue Infections/epidemiology , Wound Infection/epidemiology , Adult , Aged , Aged, 80 and over , Child , Cross Infection/microbiology , Drug Contamination , Electrophoresis, Gel, Pulsed-Field , Female , Genotype , Hospitals, University , Humans , Infant , Male , Middle Aged , Molecular Epidemiology , Molecular Typing , Serratia Infections/microbiology , Serratia marcescens/classification , Serratia marcescens/genetics , Sodium Chloride , Soft Tissue Infections/microbiology , Turkey/epidemiology , Wound Infection/microbiology
19.
Multidiscip Respir Med ; 11: 35, 2016.
Article in English | MEDLINE | ID: mdl-27766147

ABSTRACT

BACKGROUND: The aim of this study is to evaluate the presence of neurocognitive dysfunctions, depression and anxiety and the effect of positive airway pressure (PAP) therapy on these alterations in Obesity Hypoventilation Syndrome (OHS) patients. METHODS: Ten healthy normal and obese controls, 10 OHS and 10 OSAS patients were included in the study. Short form-36, Beck Depression Scale and State-Trade Anxiety Inventory (STAI 1-2) were performed. Wisconsin Card Sorting Test (WCST), Montreal Cognitive Assessment Scale (MOCA), Enhanced Cued Recall (ECR) and Mini Mental Test (MMT) were used for neurocognitive evaluation. All tests were repeated after one night PAP therapy in OHS and OSAS groups. RESULTS: OHS patients had the lowest scores of physical (PF) and social functioning (SF) in SF-36. The total number of persistent errors and incorrect answers were the highest in OHS group in WCST. The scores of MOCA, ECR and MMT were lower; depression and anxiety scores were higher in OHS group than in controls (p = 0,00). There was a significant increase in the completed categories in OHS after PAP therapy (p = 0,03). There were also significant increases in MOCA, ECR and MMT scores and significant decreases in depression and anxiety scores with respect to PAP therapy. CONCLUSIONS: Cognitive dysfunction, depression and anxiety are important under-recognized comorbidities in OHS. It is suggested that short term PAP therapy had positive effects on neurocognitive functions, depression and anxiety but further multicentre, prospective studies with large number of cases are needed to evaluate the effect of long term PAP therapy on these parameters.

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