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1.
Sci Rep ; 9(1): 4656, 2019 03 15.
Article in English | MEDLINE | ID: mdl-30874582

ABSTRACT

Peptidoglycan is a major component of the bacterial cell wall and thus a major determinant of cell shape. Its biosynthesis is initiated by several sequential reactions catalyzed by cytoplasmic Mur enzymes. Mur ligases (MurC, -D, -E, and -F) are essential for bacteria, metabolize molecules not present in eukaryotes, and are structurally and biochemically tractable. However, although many Mur inhibitors have been developed, few have shown promising antibacterial activity, prompting the hypothesis that within the cytoplasm, Mur enzymes could exist as a complex whose architecture limits access of small molecules to their active sites. This suggestion is supported by the observation that in many bacteria, mur genes are present in a single operon, and pairs of these genes often are fused to generate a single polypeptide. Here, we explored this genetic arrangement in the human pathogen Bordetella pertussis and show that MurE and MurF are expressed as a single, bifunctional protein. EM, small angle X-ray scattering (SAXS), and analytical centrifugation (AUC) revealed that the MurE-MurF fusion displays an elongated, flexible structure that can dimerize. Moreover, MurE-MurF interacted with the peripheral glycosyltransferase MurG, which formed discrete oligomers resembling 4- or 5-armed stars in EM images. The oligomeric structure of MurG may allow it to play a bona fide scaffolding role for a potential Mur complex, facilitating the efficient conveyance of peptidoglycan-building blocks toward the inner membrane leaflet. Our findings shed light on the structural determinants of a peptidoglycan formation complex involving Mur enzymes in bacterial cell wall formation.


Subject(s)
Bacterial Outer Membrane Proteins/metabolism , Bordetella pertussis/genetics , Bordetella pertussis/metabolism , N-Acetylglucosaminyltransferases/metabolism , Anti-Bacterial Agents/pharmacology , Bacterial Outer Membrane Proteins/genetics , Bacterial Outer Membrane Proteins/physiology , Bacterial Proteins/metabolism , Binding Sites/physiology , Bordetella pertussis/pathogenicity , Catalytic Domain/physiology , Cell Wall/metabolism , Cytoplasm/metabolism , Glycosyltransferases/metabolism , Glycosyltransferases/physiology , Humans , N-Acetylglucosaminyltransferases/genetics , N-Acetylglucosaminyltransferases/physiology , Peptide Synthases/metabolism , Peptidoglycan/biosynthesis , Peptidoglycan/metabolism , Protein Binding/physiology , Scattering, Small Angle , X-Ray Diffraction/methods
2.
Antibiotics (Basel) ; 5(2)2016 Apr 28.
Article in English | MEDLINE | ID: mdl-27136593

ABSTRACT

The bacterial cell wall is essential for survival, and proteins that participate in its biosynthesis have been the targets of antibiotic development efforts for decades. The biosynthesis of its main component, the peptidoglycan, involves the coordinated action of proteins that are involved in multi-member complexes which are essential for cell division (the "divisome") and/or cell wall elongation (the "elongasome"), in the case of rod-shaped cells. Our knowledge regarding these interactions has greatly benefitted from the visualization of different aspects of the bacterial cell wall and its cytoskeleton by cryoelectron microscopy and tomography, as well as genetic and biochemical screens that have complemented information from high resolution crystal structures of protein complexes involved in divisome or elongasome formation. This review summarizes structural and functional aspects of protein complexes involved in the cytoplasmic and membrane-related steps of peptidoglycan biosynthesis, with a particular focus on protein-protein interactions whereby disruption could lead to the development of novel antibacterial strategies.

3.
Proc Natl Acad Sci U S A ; 108(52): 20998-1003, 2011 Dec 27.
Article in English | MEDLINE | ID: mdl-22171003

ABSTRACT

Coupling of spindle orientation to cellular polarity is a prerequisite for epithelial asymmetric cell divisions. The current view posits that the adaptor Inscuteable (Insc) bridges between Par3 and the spindle tethering machinery assembled on NuMALGNGαi(GDP), thus triggering apico-basal spindle orientation. The crystal structure of the Drosophila ortholog of LGN (known as Pins) in complex with Insc reveals a modular interface contributed by evolutionary conserved residues. The structure also identifies a positively charged patch of LGN binding to an invariant EPE-motif present on both Insc and NuMA. In vitro competition assays indicate that Insc competes with NuMA for LGN binding, displaying a higher affinity, and that it is capable of opening the LGN conformational switch. The finding that Insc and NuMA are mutually exclusive interactors of LGN challenges the established model of force generators assembly, which we revise on the basis of the newly discovered biochemical properties of the intervening components.


Subject(s)
Asymmetric Cell Division/physiology , Cytoskeletal Proteins/genetics , Drosophila Proteins/genetics , Epithelial Cells/physiology , Guanine Nucleotide Dissociation Inhibitors/genetics , Membrane Proteins/genetics , Models, Molecular , Nerve Tissue Proteins/genetics , Amino Acid Sequence , Animals , Antigens, Nuclear/genetics , Antigens, Nuclear/metabolism , Binding, Competitive/physiology , Cell Cycle Proteins , Cell Polarity/physiology , Chickens , Chromatography, Affinity , Chromatography, Ion Exchange , Crystallization , Cytoskeletal Proteins/metabolism , Drosophila , Drosophila Proteins/metabolism , Electrophoresis, Polyacrylamide Gel , Fluorescence Polarization , Guanine Nucleotide Dissociation Inhibitors/metabolism , Humans , Membrane Proteins/metabolism , Mice , Molecular Sequence Data , Nerve Tissue Proteins/metabolism , Nuclear Matrix-Associated Proteins/genetics , Nuclear Matrix-Associated Proteins/metabolism , Oryzias , Protein Conformation , Sequence Alignment , Spindle Apparatus/physiology , Static Electricity , Xenopus laevis , Zebrafish
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