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1.
Mol Biol Evol ; 40(9)2023 09 01.
Article in English | MEDLINE | ID: mdl-37671664

ABSTRACT

Nonadaptive hypotheses on the evolution of eukaryotic genome size predict an expansion when the process of purifying selection becomes weak. Accordingly, species with huge genomes, such as lungfish, are expected to show a genome-wide relaxation signature of selection compared with other organisms. However, few studies have empirically tested this prediction using genomic data in a comparative framework. Here, we show that 1) the newly assembled transcriptome of the Australian lungfish, Neoceratodus forsteri, is characterized by an excess of pervasive transcription, or transcriptional leakage, possibly due to suboptimal transcriptional control, and 2) a significant relaxation signature in coding genes in lungfish species compared with other vertebrates. Based on these observations, we propose that the largest known animal genomes evolved in a nearly neutral scenario where genome expansion is less efficiently constrained.


Subject(s)
Fishes , Genomics , Animals , Australia , Fishes/genetics , Genome Size , Selection, Genetic
2.
J Anal Toxicol ; 31(7): 388-93, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17725887

ABSTRACT

A sample preparation procedure using microwave energy is proposed for the determination of morphine, 6-acetylmorphine, codeine, cocaine, cocaethylene, benzoylecgonine, methadone, and 2-ethylene-1,5-dimethyl-3,3-diphenylpyrrolidine in human plasma. A screening asymmetrical factorial design was used to identify the most suitable extraction conditions as regards solvent, temperature, and extraction time. The target drugs were quantified by high-performance liquid chromatography with diode-array detection. The use of microwave energy was found to reduce solvent consumption and extraction time compared with solid-phase extraction. The detector response was linear over the drug concentration range of 0.05-2.0 microg/mL in human plasma. The precision and accuracy were good, with values less than 8% and 7%, respectively. Drug recoveries from spiked samples ranged from 69 to 81%. The proposed method was successfully applied to a number of forensic cases.


Subject(s)
Illicit Drugs/blood , Illicit Drugs/isolation & purification , Microwaves , Substance Abuse Detection/methods , Calibration , Chromatography, High Pressure Liquid/methods , Cocaine/analogs & derivatives , Cocaine/blood , Cocaine/isolation & purification , Codeine/blood , Codeine/isolation & purification , Forensic Medicine , Humans , Methadone/blood , Methadone/isolation & purification , Morphine/blood , Morphine/isolation & purification , Pyrrolidines/blood , Pyrrolidines/isolation & purification , Reproducibility of Results , Solvents , Spectrophotometry, Atomic
3.
J Appl Toxicol ; 27(4): 373-9, 2007.
Article in English | MEDLINE | ID: mdl-17265433

ABSTRACT

Microwave assisted extraction (MAE) was used to extract drugs of abuse from urine samples for the simultaneous determination of morphine, codeine, 6-acetylmorphine (6AM), cocaine, cocaethylene, benzoylecgonine (BEG), methadone and 2-ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine (EDDP) by high performance liquid chromatography with diode array detector (HPLC-DAD). The working wavelengths used were 285 nm for morphine, codeine and 6AM; 233 nm for cocaine, cocaethylene and BEG; and 292 nm for methadone and EDDP. The mobile phase was a gradient of acetonitrile and phosphate buffer at pH 6.5. A full factorial design was used to identify the most suitable extraction conditions as regards pH, solvent and time of extraction. The optimum conditions thus established provided analyte recoveries from 61% to 109%. The detector response was linear over the drug concentration range 0.1-4.0 microg ml(-1) in urine. The within- and between-day precision and accuracy were less than 8% and 6.5%, respectively. The method was applied successfully to samples obtained from Galician hospitals and courts.


Subject(s)
Illicit Drugs/isolation & purification , Illicit Drugs/urine , Microwaves , Solid Phase Extraction/methods , Calibration , Chromatography, High Pressure Liquid/methods , Cocaine/analogs & derivatives , Cocaine/isolation & purification , Cocaine/urine , Codeine/isolation & purification , Codeine/urine , Humans , Hydrogen-Ion Concentration , Methadone/isolation & purification , Methadone/urine , Morphine/isolation & purification , Morphine/urine , Pyrrolidines/isolation & purification , Pyrrolidines/urine , Reproducibility of Results , Solid Phase Extraction/instrumentation , Spectrophotometry, Atomic/methods , Time Factors
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