Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps.

Background: Broad-scale monitoring of arthropods is often carried out with passive traps (e.g., Malaise traps) that can collect thousands of specimens per sample. The identification of individual specimens requires time and taxonomic expertise, limiting the geographical and temporal scale of research and monitoring studies. DNA metabarcoding of bulk-sample homogenates has been found to be faster, efficient and reliable, but the destruction of samples prevents a posteriori validation of species occurrences and relative abundances. Non-destructive metabarcoding of DNA extracted from collection medium has been applied in a limited number of studies, but further tests of efficiency are required with different trap types and collection media to assess the consistency of the method. Methods: We quantified the detection rate of arthropod species when applying non-destructive DNA metabarcoding with a short (127-bp) fragment of mitochondrial COI on two combinations of passive traps and collection media: (1) water with monopropylene glycol (H2O-MPG) used in window-flight traps (WFT, 53 in total); (2) ethanol with monopropylene glycol (EtOH-MPG) used in Malaise traps (MT, 27 in total). We then compared our results with those obtained for the same samples using morphological identification (for WFTs) or destructive metabarcoding of bulk homogenate (for MTs). This comparison was applied as part of a larger study of arthropod species richness in silver fir (Abies alba Mill., 1759) stands across a range of climate-induced tree dieback levels and forest management strategies. Results: Of the 53 H2O-MPG samples from WFTs, 16 produced no metabarcoding results, while the remaining 37 samples yielded 77 arthropod MOTUs in total, of which none matched any of the 343 beetle species morphologically identified from the same traps. Metabarcoding of 26 EtOH-MPG samples from MTs detected more arthropod MOTUs (233) than destructive metabarcoding of homogenate (146 MOTUs, 8 orders), of which 71 were shared MOTUs, though MOTU richness per trap was similar between treatments. While we acknowledge the failure of metabarcoding from WFT-derived collection medium (H2O-MPG), the treatment of EtOH-based Malaise trapping medium remains promising. We conclude however that DNA metabarcoding from collection medium still requires further methodological developments and cannot replace homogenate metabarcoding as an approach for arthropod monitoring. It can be used nonetheless as a complementary treatment when enhancing the detection of soft-bodied arthropods like spiders and Diptera.

Increasing landscape heterogeneity as a win-win solution to manage trade-offs in biological control of crop and woodland pests.

Agriculture and forestry cover more than 75% of Europe, and invertebrate pests are a costly challenge for these two economic sectors. Landscape management is increasingly promoted as a solution to enhance biological pest control, but little is known on its effects on adjacent crop fields and woodlands. This study aims to explore the effect of the proportion of woodlands and permanent grasslands as well as crop diversity on biological pest control simultaneously in cereals fields and woodland patches, in south-western France. We used different types of sentinel prey as well as bird and carabid community metrics to assess biological pest control potential in these two ecosystems. We first show that land cover variables influence biological pest control both in cereal fields and woodland patches, but have antagonistic effects in the two ecosystems. Although results vary according to the biological control indicator considered, we show that increasing landscape heterogeneity represents a valuable solution to manage trade-offs and promote higher average predation rates across forests and cereal fields. Our study therefore calls for more integrative studies to identify landscape management strategies that enable nature-based solutions across ecosystems.

Ambient and substrate energy influence decomposer diversity differentially across trophic levels.

The species-energy hypothesis predicts increasing biodiversity with increasing energy in ecosystems. Proxies for energy availability are often grouped into ambient energy (i.e., solar radiation) and substrate energy (i.e., non-structural carbohydrates or nutritional content). The relative importance of substrate energy is thought to decrease with increasing trophic level from primary consumers to predators, with reciprocal effects of ambient energy. Yet, empirical tests are lacking. We compiled data on 332,557 deadwood-inhabiting beetles of 901 species reared from wood of 49 tree species across Europe. Using host-phylogeny-controlled models, we show that the relative importance of substrate energy versus ambient energy decreases with increasing trophic levels: the diversity of zoophagous and mycetophagous beetles was determined by ambient energy, while non-structural carbohydrate content in woody tissues determined that of xylophagous beetles. Our study thus overall supports the species-energy hypothesis and specifies that the relative importance of ambient temperature increases with increasing trophic level with opposite effects for substrate energy.

Importance of conserving large and old trees to continuity of tree-related microhabitats.

Protecting structural features, such as tree-related microhabitats (TreMs), is a cost-effective tool crucial for biodiversity conservation applicable to large forested landscapes. Although the development of TreMs is influenced by tree diameter, species, and vitality, the relationships between tree age and TreM profile remain poorly understood. Using a tree-ring-based approach and a large data set of 8038 trees, we modeled the effects of tree age, diameter, and site characteristics on TreM richness and occurrence across some of the most intact primary temperate forests in Europe, including mixed beech and spruce forests. We observed an overall increase in TreM richness on old and large trees in both forest types. The occurrence of specific TreM groups was variably related to tree age and diameter, but some TreM groups (e.g., epiphytes) had a stronger positive relationship with tree species and elevation. Although many TreM groups were positively associated with tree age and diameter, only two TreM groups in spruce stands reacted exclusively to tree age (insect galleries and exposed sapwood) without responding to diameter. Thus, the retention of trees for conservation purposes based on tree diameter appears to be a generally feasible approach with a rather low risk of underrepresentation of TreMs. Because greater tree age and diameter positively affected TreM development, placing a greater emphasis on conserving large trees and allowing them to reach older ages, for example, through the establishment of conservation reserves, would better maintain the continuity of TreM resource and associated biodiversity. However, this approach may be difficult due to the widespread intensification of forest management and global climate change.

Importancia de conservar los árboles viejos y grandes para la continuidad de los microhábitats relacionados Resumen La protección de las características estructurales, como los microhábitats relacionados a los árboles (MhAr), es una herramienta económica importante para la conservación de la biodiversidad que puede aplicarse en los paisajes boscosos extensos. Aunque el diámetro, especie y vitalidad del árbol influyen sobre el desarrollo de los MhAr, todavía se sabe poco sobre las relaciones entre la edad del árbol y el perfil. Modelamos los efectos de la edad y diámetro del árbol y las características del sitio sobre la riqueza y presencia de los MhAr en algunos de los bosques primarios más preservados de Europa, incluyendo los bosques mixtos de hayas y abetos, con una estrategia basada en los anillos de crecimiento y un conjunto con datos de 8038 árboles. Observamos un incremento generalizado en la riqueza de MhAr en los árboles viejos y grandes en ambos tipos de bosques. La presencia de grupos específicos de MhAr tuvo una relación variada con el diámetro y la edad del árbol, aunque algunos grupos de MhAr (p. ej.: epífitas) tuvieron una relación positiva más fuerte con la elevación y la especie del árbol. Mientras que muchos grupos de MhAr estuvieron asociados positivamente con la edad y diámetro del árbol, sólo dos grupos de MhAr en los abetos reaccionaron exclusivamente a la edad del árbol (galerías de insectos y savia expuesta) sin responder al diámetro. Por lo tanto, la retención de los árboles con fines de conservación basada en los diámetros parece ser una estrategia plausible con un riesgo bajo de subrepresentación de los MhAr. Ya que a mayor edad y diámetro del árbol hubo efectos positivos en el desarrollo de los MhAr, poner un mayor énfasis sobre la conservación de los árboles grandes y permitirles alcanzar una edad mayor, por ejemplo, a través del establecimiento de reservas de conservación, mantendría de mejor manera la continuidad del MhAr y de la biodiversidad asociada. Sin embargo, esta estrategia puede ser complicada debido a la intensificación generalizada de la gestión forestal y el cambio climático mundial.

Natural disturbance regimes as a guide for sustainable forest management in Europe.

In Europe, forest management has controlled forest dynamics to sustain commodity production over multiple centuries. Yet over-regulation for growth and yield diminishes resilience to environmental stress as well as threatens biodiversity, leading to increasing forest susceptibility to an array of disturbances. These trends have stimulated interest in alternative management systems, including natural dynamics silviculture (NDS). NDS aims to emulate natural disturbance dynamics at stand and landscape scales through silvicultural manipulations of forest structure and landscape patterns. We adapted a "Comparability Index" (CI) to assess convergence/divergence between natural disturbances and forest management effects. We extended the original CI concept based on disturbance size and frequency by adding the residual structure of canopy trees after a disturbance as a third dimension. We populated the model by compiling data on natural disturbance dynamics and management from 13 countries in Europe, covering four major forest types (i.e., spruce, beech, oak, and pine-dominated forests). We found that natural disturbances are highly variable in size, frequency, and residual structure, but European forest management fails to encompass this complexity. Silviculture in Europe is skewed toward even-aged systems, used predominately (72.9% of management) across the countries assessed. The residual structure proved crucial in the comparison of natural disturbances and silvicultural systems. CI indicated the highest congruence between uneven-aged silvicultural systems and key natural disturbance attributes. Even so, uneven-aged practices emulated only a portion of the complexity associated with natural disturbance effects. The remaining silvicultural systems perform poorly in terms of retention compared to tree survivorship after natural disturbances. We suggest that NDS can enrich Europe's portfolio of management systems, for example where wood production is not the primary objective. NDS is especially relevant to forests managed for habitat quality, risk reduction, and a variety of ecosystem services. We suggest a holistic approach integrating NDS with more conventional practices.

Climate-induced forest dieback drives compositional changes in insect communities that are more pronounced for rare species.

Species richness, abundance and biomass of insects have recently undergone marked declines in Europe. We metabarcoded 211 Malaise-trap samples to investigate whether drought-induced forest dieback and subsequent salvage logging had an impact on ca. 3000 species of flying insects in silver fir Pyrenean forests. While forest dieback had no measurable impact on species richness, there were significant changes in community composition that were consistent with those observed during natural forest succession. Importantly, most observed changes were driven by rare species. Variation was explained primarily by canopy openness at the local scale, and the tree-related microhabitat diversity and deadwood amount at landscape scales. The levels of salvage logging in our study did not explain compositional changes. We conclude that forest dieback drives changes in species assemblages that mimic natural forest succession, and markedly increases the risk of catastrophic loss of rare species through homogenization of environmental conditions.

A spatially-explicit database of tree-related microhabitats in Europe and beyond.

Background: Tree to tree interactions are important structuring mechanisms for forest community dynamics. Forest management takes advantage of competition effects on tree growth by removing or retaining trees to achieve management goals. Both competition and silviculture have, thus, a strong effect on density and distribution of tree related microhabitats which are key features for forest taxa at the stand scale. In particular, spatially-explicit data to understand patterns and mechanisms of tree-related microhabitats formation in forest stands are rare. To train and eventually improve decision-making capacities related to the integration of biodiversity aspects into forest management plot of one hectare, so called marteloscopes were established in the frame of the 'European Integrate Network'. In each plot, a set of data is collected at the individual tree level and stored in a database, the 'I+ repository'. The 'I+ repository' is a centralised online database which serves for maintaining the data of all marteloscope plots. A subset of this repository was made publicly available via the Global Biodiversity Information Facility, based on a data-sharing policy. Data included are tree location in plot, tree species, forest mensuration data (diameter at breast height [cm], tree height [m]), tree status (living or standing dead) and tree-related microhabitats. Further, a visual assessment of timber quality classes is performed in order to provide an estimate of the economic value (market price) for each tree. This information is not part of the GBIF dataset. New information: Currently 42,078 individual tree observations from 111 plots are made available via the Global Biodiversity Information Facility (GBIF). As the network of plots continues to expand, so does the database of tree-related microhabitats. Therefore, the database will undergo a regular update. The current version has a temporal coverage from March 2014 to December 2020. The innovation of this unique dataset is that it is based on a commonly agreed catalogue of tree microhabitats as a field reference list when assessing assessment protocol. The reference list is available in 17 languages and, thus, helps to guarantee compatibility of tree-related microhabitat assessments across countries and plots.

European primary forest database v2.0.

Primary forests, defined here as forests where the signs of human impacts, if any, are strongly blurred due to decades without forest management, are scarce in Europe and continue to disappear. Despite these losses, we know little about where these forests occur. Here, we present a comprehensive geodatabase and map of Europe's known primary forests. Our geodatabase harmonizes 48 different, mostly field-based datasets of primary forests, and contains 18,411 individual patches (41.1 Mha) spread across 33 countries. When available, we provide information on each patch (name, location, naturalness, extent and dominant tree species) and the surrounding landscape (biogeographical regions, protection status, potential natural vegetation, current forest extent). Using Landsat satellite-image time series (1985-2018) we checked each patch for possible disturbance events since primary forests were identified, resulting in 94% of patches free of significant disturbances in the last 30 years. Although knowledge gaps remain, ours is the most comprehensive dataset on primary forests in Europe, and will be useful for ecological studies, and conservation planning to safeguard these unique forests.

Bat responses to changes in forest composition and prey abundance depend on landscape matrix and stand structure.

Despite the key importance of the landscape matrix for bats, we still not fully understand how the effect of forest composition interacts at combined stand and landscape scales to shape bat communities. In addition, we lack detailed knowledge on the effects of local habitat structure on bat-prey relationships in forested landscapes. We tested the assumptions that (i) forest composition has interacting effects on bats between stand and landscape scales; and (ii) stand structure mediates prey abundance effects on bat activity. Our results indicated that in conifer-dominated landscapes (> 80% of coniferous forests) bat activity was higher in stands with a higher proportion of deciduous trees while bats were less active in stands with a higher proportion of deciduous trees in mixed forest landscapes (~ 50% of deciduous forests). Moth abundance was selected in the best models for six among nine bat species. The positive effect of moth abundance on Barbastella barbastellus was mediated by vegetation clutter, with dense understory cover likely reducing prey accessibility. Altogether, our findings deepen our understanding of the ecological processes affecting bats in forest landscapes and strengthen the need to consider both landscape context and trophic linkage when assessing the effects of stand-scale compositional and structural attributes on bats.

[Ancientness and maturity: two complementary qualities of forest ecosystems]. / Ancienneté et maturité: deux qualités complémentaires d'un écosystème forestier.

Ancientness and maturity are two major qualities of forest ecosystems. They are components of naturalness and are affected by human impact. These qualities and the associated terms are often mixed up and incorrectly used. We have carried out a synthesis in order to propose an adapted French terminology based on international literature. The topics of ancientness and maturity for biodiversity and soil characteristics are explained. This review leads us to submit different potential thresholds for ancientness and maturity. An analysis on ancientness and maturity on forest data for France leads to the conclusion that about 29% of all forests can be considered "ancient woodland", and less than 3% of the even-age forest is older than the harvesting age.