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1.
J Small Anim Pract ; 2018 Mar 30.
Article in English | MEDLINE | ID: mdl-29603248

ABSTRACT

OBJECTIVE: To evaluate the proportion of blood samples diagnosed with reticulocytosis without anaemia in cats and dogs and report the aetiology and mortality rate of affected animals. MATERIALS AND METHODS: Retrospective multicentre study including haematological examination of 3956 cats and 11,087 dogs admitted to seven German veterinary clinics (2012 to 2014). The proportion of blood samples with reticulocytosis without anaemia was calculated, and after exclusion of multiple measurements of the same animal, clinical data were evaluated. Animals with reticulocytosis without anaemia were classified as healthy or diseased, and diseased patients were assigned to 12 disease groups. Pretreatment (i.e. non-steroidal anti-inflammatory drugs, glucocorticoids, dipyrone) was recorded. RESULTS: The proportion of blood samples with reticulocytosis without anaemia was 3·1% (124/3956) in cats and 4·4% (492/11,087) in dogs. Overall, 1·8% (2/111) of cats and 1·5% (7/458) of dogs with reticulocytosis without anaemia were healthy. Blood loss/anaemia, cardiac/respiratory disorders, gastrointestinal disorders and inflammatory disorders as well as cancer were the most frequent underlying diseases. Pretreatment was noted in 39·5% (43/111) of cats and 42·4% (194/458) of dogs. The mortality rate was 37·8% (42/111) in cats and 29·7% (136/458) in dogs with reticulocytosis without anaemia; the median survival time in non-survivors was 1 day (range: 0 to 376 days in cats, 0 to 444 days in dogs). CLINICAL SIGNIFICANCE: In both species, reticulocytosis without anaemia was observed in a low proportion of blood samples (dogs>cat). Though a bias towards sick animals is possible in our sample, reticulocytosis without anaemia was mainly seen in diseased animals and associated with a mortality rate of approximately one-third of patients.

2.
J Biol Regul Homeost Agents ; 32(1): 37-45, 2018.
Article in English | MEDLINE | ID: mdl-29504363

ABSTRACT

Regulated-on-activation, normal T cell expressed and secreted (also called RANTES, CCL5 or R/C) is a chemotactic cytokine that plays a key role in recruiting immune cells to inflammatory sites. R/C is involved in the pathogenesis of many systemic immune-mediated diseases (SIDs) and is upregulated in fatty-degenerative osteolysis jawbone (FDOJ) cavitations. Surgical cleaning of degenerative areas reduces the source of chronic R/C but might not be sufficient to re-establish the altered immunological patterns. The aim of the present study was to collect clinical data from patients suffering from sids who underwent dental surgery of FDOJ areas (n=46), by measuring R/C serum levels at the first visit (V0) prior to surgery, and at the second visit (V1). The majority of patients (n=41) were treated one month with ultra-low dose RANTES (27CH), a medicine used in micro-immunotherapy, while five patients were not. Mean and standard deviation of R/C serum levels at V0 in treated and untreated patients were respectively 48.5±25.8ng/ml and 42.48±22.22ng/ ml. Untreated patients had a tendency towards higher R/C levels at V1 (68.36±30.7ng/ml; p=0.062), while an opposite tendency was observed in treated patients (40.9±20.3ng/ml; p=0.129). Investigators observed that a cut-off set at 40ng/ml at V0 seemed to be predictive of the efficacy of the dental surgery/treatment (p=0.0013, n=26) and that gender could influence R/C levels and patient's responsiveness. The Authors, being aware that this is a preliminary follow-up, wanted to lay the basis for forthcoming studies, in which a larger cohort of patients and well-defined inclusion/exclusion criteria will be established.


Subject(s)
Chemokine CCL5/administration & dosage , Immune System Diseases , Jaw Diseases , Postoperative Complications , Female , Follow-Up Studies , Humans , Immune System Diseases/drug therapy , Immune System Diseases/immunology , Immune System Diseases/pathology , Jaw Diseases/drug therapy , Jaw Diseases/immunology , Jaw Diseases/pathology , Male , Osteolysis , Postoperative Complications/drug therapy , Postoperative Complications/immunology , Postoperative Complications/pathology
3.
J Biol Regul Homeost Agents ; 31(2): 321-327, 2017.
Article in English | MEDLINE | ID: mdl-28685531

ABSTRACT

This study elucidates the question of whether chronic inflammation in the jawbone contributes to the development of Chronic Fatigue Syndrome (CFS). Fatty degenerative osteonecrosis in jawbone (FDOJ) may contribute to CFS by induction of inflammatory mediators. We examined seven cytokines by multiplex analysis in jawbone samples from two groups of patients. In order to clarify neurological interrelations, specimens from 21 CFS patients were analyzed from areas of previous surgery in the retromolar wisdom tooth area. Each of the retromolar jawbone samples showed clinically fatty degenerated and osteonecrotic medullary changes. As control, healthy jawbone specimens from 19 healthy patients were analyzed. All fatty necrotic and osteolytic jawbone (FDOJ) samples showed high expression of RANTES and fibroblast growth factor (FGF)-2. FDOJ cohorts showed a 30-fold mean overexpression of RANTES and a 20-fold overexpressed level of FGF-2 when compared to healthy controls. As RANTES is discussed in the literature as a possible contributor to inflammatory diseases, we hypothesize that FDOJ in areas of improper and incomplete wound healing in the jawbone may hyperactivate signaling pathways. Constituting a hidden source of “silent inflammation” FDOJ may represent a hitherto unknown cause for the development of CFS.


Subject(s)
Chemokine CCL5/biosynthesis , Fatigue Syndrome, Chronic/metabolism , Jaw Diseases/metabolism , Jaw/metabolism , Osteonecrosis/metabolism , Adult , Aged , Fatigue Syndrome, Chronic/pathology , Female , Fibroblast Growth Factor 2/biosynthesis , Humans , Jaw/pathology , Jaw Diseases/pathology , Male , Middle Aged , Osteonecrosis/pathology
4.
Curr Mol Med ; 16(4): 412-23, 2016.
Article in English | MEDLINE | ID: mdl-27009107

ABSTRACT

Infiltrating macrophages are critically involved in pathogenic angiogenesis such as neovascular agerelated macular degeneration (nAMD). Macrophages originate from circulating monocytes and three subtypes of monocyte exist in humans: classical (CD14(+)CD16(-)), non-classical (CD14(-)CD16(+)) and intermediate (CD14(+)CD16(+)) monocytes. The aim of this study was to investigate the role of circulating monocyte in neovascular age-related macular degeneration (nAMD). Flow cytometry analysis showed that the intermediate monocytes from nAMD patients expressed higher levels of CX3CR1 and HLA-DR compared to those from controls. Monocytes from nAMD patients expressed higher levels of phosphorylated Signal Transducer and Activator of Transcription 3 (pSTAT3), and produced higher amount of VEGF. In the mouse model of choroidal neovascularization (CNV), pSTAT3 expression was increased in the retina and RPE/choroid, and 49.24% of infiltrating macrophages express pSTAT3. Genetic deletion of the Suppressor of Cytokine Signalling 3 (SOCS3) in myeloid cells in the LysM-Cre(+/-):SOCS3(fl/fl) mice resulted in spontaneous STAT3 activation and accelerated CNV formation. Inhibition of STAT3 activation using a small peptide LLL12 suppressed laserinduced CNV. Our results suggest that monocytes, in particular the intermediate subset of monocytes are activated in nAMD patients. STAT3 activation in circulating monocytes may contribute to the development of choroidal neovascularisation in AMD.


Subject(s)
Monocytes/metabolism , STAT3 Transcription Factor/metabolism , Wet Macular Degeneration/blood , Wet Macular Degeneration/pathology , Animals , Anthraquinones/pharmacology , Blotting, Western , Case-Control Studies , Choroidal Neovascularization/metabolism , Choroidal Neovascularization/pathology , HLA-DR Antigens/metabolism , Humans , Lasers , Mice, Inbred C57BL , Mice, Knockout , Middle Aged , Phenotype , Phosphorylation/drug effects , Receptors, Chemokine/metabolism , Retina/drug effects , Retina/pathology , Sulfonamides/pharmacology , Suppressor of Cytokine Signaling 3 Protein/metabolism
5.
Clin Biochem ; 46(15): 1561-5, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23769817

ABSTRACT

OBJECTIVES: To study the ability of a stabilizing reagent to prevent cellular DNA contamination of cell-free DNA (cfDNA) in plasma during whole blood sample storage and shipping. DESIGN AND METHODS: Samples were drawn from healthy donors into K3EDTA and Cell-Free DNA BCTs (BCT) and stored at room temperature (RT). Aliquots were removed at specified time points and cfDNA was purified from the plasma. A Droplet Digital PCR (ddPCR) assay that amplifies a short ß-actin gene fragment (136 bp) was used to measure the total plasma cfDNA (pDNA) concentration while a longer ß-actin fragment (420 bp) was used to quantify genomic DNA (gDNA). In a follow-up experiment, blood samples drawn into the same types of tubes were shipped round trip by overnight air before cfDNA was isolated and analyzed. RESULTS: Blood stored in K3EDTA tubes at RT showed increases in pDNA and gDNA concentrations over time. However, both pDNA and gDNA levels remained stable in BCT for at least seven days. On day 14, there was a 4.5-fold increase in pDNA in BCT as compared to >200-fold increase in K3EDTA tubes. Likewise, gDNA increased <2-fold on day 14 in BCT as opposed to a 456-fold increase in K3EDTA tubes. Similar results were observed after samples were shipped. CONCLUSIONS: Cell-Free DNA BCTs prevent gDNA contamination that may occur due to nucleated cell disruption during sample storage and shipping. This novel blood collection tube provides a method for obtaining stable cfDNA samples for rare target detection and accurate analysis while mitigating the threat of gDNA contamination.


Subject(s)
Blood Preservation/standards , Blood Specimen Collection/standards , DNA/blood , Indicators and Reagents/chemistry , Actins/blood , Blood Specimen Collection/methods , Cell Separation , DNA/standards , DNA Contamination , Edetic Acid/chemistry , Humans , Polymerase Chain Reaction , Transportation
7.
EMBO J ; 20(23): 6751-60, 2001 Dec 03.
Article in English | MEDLINE | ID: mdl-11726511

ABSTRACT

Binding to Golgi membranes of ADP ribosylation factor 1 (ARF1) is the first event in the initiation of COPI coat assembly. Based on binding studies, a proteinaceous receptor has been proposed to be critical for this process. We now report that p23, a member of the p24 family of Golgi-resident transmembrane proteins, is involved in ARF1 binding to membranes. Using a cross-link approach based on a photolabile peptide corresponding to the cytoplasmic domain of p23, the GDP form of ARF1 (ARF1-GDP) is shown to interact with p23 whereas ARF1-GTP has no detectable affinity to p23. The p23 binding is shown to localize specifically to a 22 amino acid C-terminal fragment of ARF1. While a monomeric form of a non-photolabile p23 peptide does not significantly inhibit formation of the cross-link product, the corresponding dimeric form does compete efficiently for this interaction. Consistently, the dimeric p23 peptide strongly inhibits ARF1 binding to native Golgi membranes suggesting that an oligomeric form of p23 acts as a receptor for ARF1 before nucleotide exchange takes place.


Subject(s)
ADP-Ribosylation Factor 1/chemistry , ADP-Ribosylation Factor 1/metabolism , Cytoplasm/metabolism , Golgi Apparatus/metabolism , Membrane Proteins/metabolism , Receptors, Cytoplasmic and Nuclear , Amino Acid Sequence , Binding Sites , Cross-Linking Reagents/pharmacology , Dimerization , Dose-Response Relationship, Drug , Enzyme Inhibitors/pharmacology , Guanosine Diphosphate/metabolism , Humans , Intracellular Membranes/metabolism , Light , Membrane Proteins/chemistry , Models, Biological , Molecular Sequence Data , Peptides/chemistry , Protein Binding , Protein Structure, Tertiary , Recombinant Proteins/metabolism , Thiocyanates/pharmacology
8.
Mol Cell ; 8(3): 517-29, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11583615

ABSTRACT

A nuclear GTPase, Nug1p, was identified in a genetic screen for components linked to 60S ribosomal subunit export. Nug1p cosedimented with nuclear 60S preribosomes and was required for subunit export to the cytoplasm. Tagged Nug1p coprecipitated with proteins of the 60S subunit, late precursors to the 25S and 5.8S rRNAs, and at least 21 nonribosomal proteins. These included a homologous nuclear GTPase, Nug2p, the Noc2p/Noc3p heterodimer, Rix1p, and Rlp7p, each of which was implicated in 60S subunit export. Other known ribosome synthesis factors and proteins of previously unknown function, including the 559 kDa protein Ylr106p, also copurified. Eight of these proteins were copurified with nuclear pore complexes, suggesting that this complex represents the transport intermediate for 60S subunit export.


Subject(s)
Active Transport, Cell Nucleus/physiology , Cell Nucleus/metabolism , Fungal Proteins/metabolism , GTP Phosphohydrolases/metabolism , Nuclear Proteins/metabolism , Ribosomes/metabolism , Saccharomyces cerevisiae Proteins , Amino Acid Sequence , Animals , Blotting, Northern , Centrifugation, Density Gradient , Fungal Proteins/genetics , GTP Phosphohydrolases/chemistry , GTP Phosphohydrolases/genetics , Genes, Reporter/genetics , Humans , Molecular Sequence Data , Nuclear Proteins/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Ribosomal Proteins/genetics , Ribosomal Proteins/metabolism , Ribosomes/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Sequence Alignment , Temperature , Transformation, Genetic
9.
Ren Fail ; 23(3-4): 573-88, 2001.
Article in English | MEDLINE | ID: mdl-11499571

ABSTRACT

The therapeutic administration of Interferon alpha2b (IFNalpha) is often accompanied by impaired renal function, i.e. reduced glomerular filtration rate and sometimes a so-called "capillary leak syndrome". To clarify the mechanism behind the renal dysfunction, confluent monolayers of LLC-PK1 cells were used as a model system to analyze the effects of IFNalpha on renal tubular epithelium. Examination of epithelial barrier function via measurement of transepithelial resistance (TER) revealed a dose dependent increase in paracellular permeability by IFNalpha treatment. The effect was reversible upon removal of IFNalpha at doses up to 5 x 10(3) U/mL. Apical or basolateral application of IFNalpha yielded the same decrease in TER. Tyrphostin A25, an inhibitor of phosphotyrosine kinases, ameliorated the IFNalpha induced decrease of TER. In order to unravel intracellular signal transduction pathways that may mediate IFNalpha induced changes of epithelial barrier function, we inhibited IFNalpha signaling through a mitogen activated protein kinase pathway by the Mek1 inhibitor PD98059. The inhibitor could be shown to prevent IFNalpha induced decrease of transepithelial resistance. Inhibitors of the p38 mitogen activated protein kinase pathway did not affect IFNalpha mediated changes of epithelial barrier function, indicating a highly specific role for the Mek/Erk pathway. Activation of mitogen activated protein kinase pathways by epidermal growth factor or anisomycin could not, per se, imitate the effect of IFNalpha on the paracellular permeability of LLC-PK1 monolayers. These findings provide evidence that IFNalpha can affect barrier function in renal epithelial cells via activation of the Mek/Erk pathway.


Subject(s)
Enzyme Inhibitors/pharmacokinetics , Interferon-alpha/adverse effects , Kidney Tubules, Proximal/metabolism , Protein-Tyrosine Kinases/antagonists & inhibitors , Tyrphostins/pharmacokinetics , Animals , Cell Membrane Permeability/drug effects , Enzyme Activation/drug effects , Glomerular Filtration Rate/drug effects , Humans , Interferon alpha-2 , Kidney Tubules, Proximal/cytology , LLC-PK1 Cells , Mitogens/metabolism , Protein Kinases/metabolism , Recombinant Proteins , Signal Transduction/drug effects , Swine
10.
Carcinogenesis ; 22(6): 929-34, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11375901

ABSTRACT

To investigate the potential role of human papillomavirus (HPV) infection in the pathogenesis of esophageal carcinomas in the Anyang area of China, we have evaluated specimens collected by balloon cytology examination from volunteers in two regions with significantly different incidences of esophageal carcinoma. 138 donors were from a village in a county with an esophageal carcinoma (EC) age-adjusted mortality rate of 132x10(5), the remaining 68 were resident in a second village from another county with an EC mortality rate of 52x10(5). Specimens were evaluated using both polymerase chain reaction (PCR) amplification and in situ hybridization (ISH) protocols. PCR results showed that the prevalence of the human papillomavirus type 16 (HPV-16) E6 gene in the high incidence area was 1.9-fold higher than that of the low incidence area (72 and 37%, respectively, P < 0.01). Moreover, the positive rate corresponded with pathology grade. Similar results were obtained with the HPV-16 E7 gene. As the cells undergoing cytopathological progress, the HPV-16 E6 positive rate was increased, in both villages. In contrast to HPV-16 E6 and E7, detection of the HPV L1 gene was consistently lower, and its prevalence decreased with increasing dysplasia grades (P < 0.05). By ISH analyses, the expression rate of HPV-16 E6 in the specimens collected from the high incidence area was 2.2-fold higher than those from the low incidence area (49 versus 22%, respectively; P < 0.05), and transcription of the E6 gene paralleled cytopathology. HPV-18 was also detected in 17 and 15% of the specimens from the high and low incidence areas, respectively, but most of these samples were also simultaneously HVP-16 positive. These results suggest that HVP-16 plays a causative role in the high incidence of esophageal cancer in the Anyang region of CHINA:


Subject(s)
Esophageal Neoplasms/virology , Papillomaviridae/genetics , Papillomavirus Infections/epidemiology , Repressor Proteins , Tumor Virus Infections/epidemiology , China/epidemiology , DNA, Viral/genetics , Esophageal Neoplasms/epidemiology , Esophageal Neoplasms/pathology , Female , Humans , In Situ Hybridization , Incidence , Male , Middle Aged , Oncogene Proteins, Viral/genetics , Papillomaviridae/classification , Papillomavirus E7 Proteins , Papillomavirus Infections/virology , Polymerase Chain Reaction , Tumor Virus Infections/virology
11.
Mol Cell Biol ; 21(9): 3266-79, 2001 May.
Article in English | MEDLINE | ID: mdl-11287629

ABSTRACT

The action of the glucocorticoid receptor (GR) on beta-casein gene transcription serves as a well-studied example of a case where the action of the GR is dependent on the activity of another transcription factor, STAT5. We have investigated the domain-requirement of the GR for this synergistic response in transfection experiments employing GR mutants and CV-1 or COS-7 cells. The results were influenced by the expression levels of the GR constructs. At low expression, STAT5-dependent transactivation by mutants of the GR DNA binding domain or N-terminal transactivation domain was impaired and the antiglucocorticoid RU486 exhibited a weak agonistic activity. When the N-terminal region of the GR was exchanged with the respective domain of the progesterone receptor, STAT5-dependent transactivation was reduced at low and high expression levels. Only at high expression levels did the GR exhibit the properties of a coactivator and enhanced STAT5 activity in the absence of a functional DNA binding domain and of GR binding sites in the proximal region of the beta-casein gene promoter. Furthermore, at high GR expression levels RU486 was nearly as efficient as dexamethasone in activating transcription via the STAT5 dependent beta-casein gene promoter. The results reconcile the controversial issue regarding the DNA binding-independent action of the GR together with STAT5 and provide evidence that the mode of action of the GR depends not only on the type of the particular promoter at which it acts but also on the concentration of the GR. GR DNA binding function appears to be mandatory for beta-casein gene expression in mammary epithelial cells, since the promoter function is completely dependent on the integrity of GR binding sites in the promoter.


Subject(s)
DNA-Binding Proteins/metabolism , Milk Proteins , Receptors, Glucocorticoid/genetics , Trans-Activators/metabolism , Transcriptional Activation , Amino Acid Sequence , Amino Acid Substitution , Animals , Binding Sites , COS Cells , Carrier Proteins/genetics , Caseins/genetics , Cell Line , Chlorocebus aethiops , DNA/metabolism , Dimerization , HMGB1 Protein , High Mobility Group Proteins/genetics , Molecular Sequence Data , Promoter Regions, Genetic , STAT5 Transcription Factor , Zinc Fingers
12.
Carcinogenesis ; 22(5): 723-7, 2001 May.
Article in English | MEDLINE | ID: mdl-11323390

ABSTRACT

Reduced DNA repair capacity of carcinogen-induced DNA damage is now thought to significantly influence inherent susceptibility to lung cancer. DNA-dependent protein kinase (DNA-PK) is a serine-threonine kinase activated by the presence of double-strand breaks in DNA that appears to play a major role in non-homologous recombination and transcriptional control. The purpose of this study was to determine whether DNA-PK activity varies among individuals and how this affects lung cancer risk. DNA-PK activity in peripheral mononuclear cells from individuals with lung cancer (n = 41) was compared with lung cancer-free controls (n = 41). Interindividual variability was seen within each group, however, significant differences (P = 0.03) in DNA-PK activity between cases and controls were seen when comparing the distribution of enzyme activity among these two groups. The percentages of cases and controls with DNA-PK activity in the ranges 2.5-5.0 and 7.6-10.0 units were 39 versus 20% and 7 versus 29%, respectively. The enzyme activity in peripheral mononuclear cells reflected that seen in bronchial epithelial cells, one progenitor cell for lung cancer, supporting the use of peripheral mononuclear cells for larger population-based studies of DNA-PK activity. Its role as a potential modifier for lung cancer risk was supported by the fact that cell growth in bronchial epithelial cells exposed to bleomycin was directly associated with enzyme activity. The results of this study demonstrate that reduced DNA-PK repair activity is associated with risk for lung cancer.


Subject(s)
DNA-Binding Proteins , Lung Neoplasms/enzymology , Protein Serine-Threonine Kinases/metabolism , Adult , Aged , Bleomycin/pharmacology , Case-Control Studies , Cell Survival/drug effects , DNA-Activated Protein Kinase , Female , Humans , Lung Neoplasms/pathology , Male , Middle Aged , Nuclear Proteins
13.
EMBO J ; 20(4): 777-91, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11179222

ABSTRACT

Here, we show that the budding yeast proteins Ndc80p, Nuf2p, Spc24p and Spc25p interact at the kinetochore. Consistently, Ndc80p, Nuf2p, Spc24p and Spc25p associate with centromere DNA in chromatin immunoprecipitation experiments, and SPC24 interacts genetically with MCM21 encoding a kinetochore component. Moreover, although conditional lethal spc24-2 and spc25-7 cells form a mitotic spindle, the kinetochores remain in the mother cell body and fail to segregate the chromosomes. Despite this defect in chromosome segregation, spc24-2 and spc25-7 cells do not arrest in metaphase in response to checkpoint control. Furthermore, spc24-2 cells showed a mitotic checkpoint defect when microtubules were depolymerized with nocodazole, indicating that Spc24p has a function in checkpoint control. Since Ndc80p, Nuf2p and Spc24p are conserved proteins, it is likely that similar complexes are part of the kinetochore in other organisms.


Subject(s)
Fungal Proteins/metabolism , Kinetochores/metabolism , Amino Acid Sequence , Centromere , Chromosomes, Fungal , DNA, Fungal/metabolism , DNA-Binding Proteins/isolation & purification , DNA-Binding Proteins/metabolism , Fungal Proteins/isolation & purification , Molecular Sequence Data , Protein Binding , Sequence Homology, Amino Acid
14.
Radiat Res ; 155(1 Pt 2): 235-238, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11121240

ABSTRACT

Many of these deaths could be prevented if there were better screening methods to uncover the disease when it is limited and most responsive to intervention. Novel biomarkers of early-stage disease are therefore needed. By applying the principle of "oncology recapitulates ontogeny", we have discovered three homeobox (HOX) genes that are inappropriately expressed in the majority of lung tumors. Understanding the role of these inappropriately expressed genes in lung epithelial cell carcinogenesis may not only augment early detection, but may also offer new avenues of treatment of this disease.


Subject(s)
Cell Differentiation/genetics , Lung Neoplasms/pathology , Lung Neoplasms/therapy , Genes, Homeobox , Humans , Lung Neoplasms/genetics
15.
Mol Diagn ; 6(4): 217-25, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11774186

ABSTRACT

BACKGROUND: A method that provides standardized data and is relatively inexpensive and capable of high throughput is a prerequisite to the development of a meaningful gene expression database suitable for conducting multi-institutional clinical studies based on expression measurement. Standardized RT (StaRT)-PCR has all these characteristics. In addition, the method must be reproducible. StaRT-PCR has high intralaboratory reproducibility. The purpose of this study is to determine whether StaRT-PCR provides similar interlaboratory reproducibility. METHODS AND RESULTS: In a blinded interlaboratory study, expression of ten genes was measured by StaRT-PCR in a complementary DNA sample provided to each of four laboratories. The average coefficient of variation for interlaboratory comparison of the nine quantifiable genes was 0.48. In all laboratories, expression of one of the genes was too low to be measured. CONCLUSION: Because StaRT-PCR data are standardized and numerical and the method is reproducible among multiple laboratories, it will allow development of a meaningful gene expression database.


Subject(s)
Gene Expression Profiling/standards , Reverse Transcriptase Polymerase Chain Reaction/standards , Binding, Competitive/genetics , Cell Line , DNA, Complementary/genetics , Databases, Genetic , Double-Blind Method , Gene Expression , Gene Expression Profiling/classification , Gene Expression Profiling/statistics & numerical data , Humans , Lung/chemistry , Lung/cytology , Lung/metabolism , RNA, Messenger/genetics , Reverse Transcriptase Polymerase Chain Reaction/statistics & numerical data , Templates, Genetic , Terminology as Topic
16.
BMC Mol Biol ; 1: 2, 2000.
Article in English | MEDLINE | ID: mdl-11114844

ABSTRACT

BACKGROUND: PCR amplification of target molecules involves sequence specific primers that flank the region to be amplified. While this technique is generally routine, its applicability may not be sufficient to generate a desired target molecule from two separate regions involving intron /exon boundaries. For these situations, the generation of full-length complementary DNAs from two partial genomic clones becomes necessary for the family of low abundance genes. RESULTS: The first approach we used for the isolation of full-length cDNA from two known genomic clones of Hox genes was based on fusion PCR. Here we describe a simple and efficient method of amplification for homeobox D13 (HOXD13) full length cDNA from two partial genomic clones. Specific 5' and 3' untranslated region (UTR) primer pairs and website program (primer3_www.cgv0.2) were key steps involved in this process. CONCLUSIONS: We have devised a simple, rapid and easy method for generating cDNA clone from genomic sequences. The full length HOXD13 clone (1.1 kb) generated with this technique was confirmed by sequence analysis. This simple approach can be utilized to generate full-length cDNA clones from available partial genomic sequences.

17.
Proc Natl Acad Sci U S A ; 97(23): 12583-8, 2000 Nov 07.
Article in English | MEDLINE | ID: mdl-11070082

ABSTRACT

The centromere-kinetochore complex of Saccharomyces cerevisiae is a specialized chromosomal substructure that mediates attachment of duplicated chromosomes to the mitotic spindle by a regulated network of protein-DNA and protein-protein interactions. We have used in vitro assays to analyze putative molecular interactions between components of the yeast centromerekinetochore complex. Glutathione S-transferase pull-down experiments showed the direct interaction of in vitro translated p110, p64, and p58 of the essential CBF3 kinetochore protein complex with Cbf1p, a basic region helix-loop-helix zipper protein (bHLHzip) that specifically binds to the CDEI region on the centromere DNA. Furthermore, recombinant p64 and p23 each stimulated the in vitro DNA binding activity of Cbf1p. The N-terminal 70 amino acids of p23 were sufficient to mediate this effect. P64 could also promote the multimerization activity of Cbf1p in the presence of centromere DNA in vitro. These results show the direct physical interaction of Cbf1p and CBF3 subunits and provide evidence that CBF3 components can promote the binding of Cbf1p to its binding site in the yeast kinetochore. A functional comparison of the centromere binding proteins with transcription factors binding at MET16 promoters reveals the strong analogy between centromeres and the MET16 promoter.


Subject(s)
Centromere/metabolism , DNA-Binding Proteins/metabolism , F-Box Proteins , Fungal Proteins/metabolism , Kinetochores/metabolism , Nuclear Proteins/metabolism , SKP Cullin F-Box Protein Ligases , Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae/metabolism , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors , DNA/metabolism , DNA-Binding Proteins/genetics , Fungal Proteins/genetics , Helix-Loop-Helix Motifs , Leucine Zippers , Nuclear Proteins/genetics , Saccharomyces cerevisiae/genetics
18.
Am J Physiol Cell Physiol ; 279(5): C1472-82, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11029295

ABSTRACT

Overexpression of a constitutively active mutant of the mitogen-activated protein kinase kinase MEK1 (caMEK1) in epithelial Madin-Darby canine kidney (MDCK)-C7 cells disrupts morphogenesis, induces an invasive phenotype, and is associated with a reduced rate of cell proliferation. The role of cell-cell adhesion molecules and cell cycle proteins in these processes, however, has not been investigated. We now report loss of E-cadherin expression as well as a marked reduction of beta- and alpha-catenin expression in transdifferentiated MDCK-C7 cells stably expressing caMEK1 (C7caMEK1) compared with epithelial mock-transfected MDCK-C7 (C7Mock1) cells. At least part of the remaining alpha-catenin was coimmunoprecipitated with beta-catenin, whereas no E-cadherin was detected in beta-catenin immunoprecipitates. In both cell types, the proteasome-specific protease inhibitors N-acetyl-Leu-Leu-norleucinal (ALLN) and lactacystin led to a time-dependent accumulation of beta-catenin, including the appearance of high-molecular-weight beta-catenin species. Quiescent as well as serum-stimulated C7caMEK1 cells showed a higher cyclin D expression than epithelial C7Mock1 cells. The MEK inhibitor U-0126 inhibited extracellular signal-regulated kinase phosphorylation and cyclin D expression in C7caMEK1 cells and almost abolished their already reduced cell proliferation rate. We conclude that the transdifferentiated and invasive phenotype of C7caMEK1 cells is associated with a diminished expression of proteins involved in cell-cell adhesion. Although beta-catenin expression is reduced, C7caMEK1 cells show a higher expression of U-0126-sensitive cyclin D protein.


Subject(s)
Cell Adhesion Molecules/metabolism , Cyclins/metabolism , Mitogen-Activated Protein Kinase Kinases/physiology , Protein Serine-Threonine Kinases/physiology , Trans-Activators , Animals , Cadherins/metabolism , Cell Differentiation/physiology , Cell Division/physiology , Cell Line/cytology , Cyclin D , Cysteine Endopeptidases/physiology , Cytoskeletal Proteins/metabolism , Dogs , Kidney/cytology , Kidney/metabolism , MAP Kinase Kinase 1 , Mitogen-Activated Protein Kinase Kinases/genetics , Multienzyme Complexes/physiology , Peptide Hydrolases/metabolism , Proteasome Endopeptidase Complex , Protein Serine-Threonine Kinases/genetics , Transfection , alpha Catenin , beta Catenin
19.
Yeast ; 15(9): 793-8, 1999 Jun 30.
Article in English | MEDLINE | ID: mdl-10398347

ABSTRACT

The gene encoding centromere binding factor 3d (CBF3D) of the human pathogenic yeast Candida glabrata has been isolated by hybridization of Saccharomyces cerevisiae CBF3D (ScCBF3D) DNA to a C. glabrata partial genomic library. Sequence analysis revealed a 540 bp open reading frame encoding a protein of 179 amino acids with a calculated molecular mass of 20.9 kDa. The amino acid sequence is highly homologous (78.6% identity) to ScCbf3d and 48.3% identical to the human homologue p19 (SKP1). Southern blot analysis indicates that CgCbf3d is encoded by an unique nuclear gene. The cloned CgCBF3D gene can functionally substitute the S. cerevisiae homologue in a S. cerevisiae CBF3D-deletion mutant. The GenBank Accession No. for this gene is AF 072472.


Subject(s)
Candida/genetics , DNA-Binding Proteins/genetics , F-Box Proteins , SKP Cullin F-Box Protein Ligases , Saccharomyces cerevisiae Proteins , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Cross Reactions , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/physiology , Gene Dosage , Genetic Complementation Test , Genomic Library , Humans , Molecular Sequence Data , Molecular Weight , Open Reading Frames/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Sequence Deletion , Sequence Homology, Amino Acid
20.
Kidney Int ; 55(6): 2178-91, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10354267

ABSTRACT

BACKGROUND: Interferon alpha-2b (IFNalpha) treatment of diseases can be accompanied by impaired renal function and capillary leak syndrome. To explore potential mechanisms of IFNalpha-induced renal dysfunction, an in vitro cell culture model system was established to investigate the effects of IFNalpha on barrier function and junctional complexes. METHODS: LLC-PK1 cells were cultured on microporous membranes. Transepithelial resistance (TER) was measured, and the dose- and time-dependent effects of IFNalpha were assessed. The expression patterns of junctional proteins were examined by Western blot analysis and by confocal immunofluorescence microscopy. RESULTS: IFNalpha produced a dose- and time-dependent decrease in TER. The effect was reversible on removal of IFNalpha at doses up to 5 x 103 U/ml. Tyrphostin, an inhibitor of phosphotyrosine kinases, ameliorated the IFNalpha-induced decrease in TER. Increased expression of occludin and E-cadherin was detected by Western blot analysis after IFNalpha treatment. Immunofluorescence confocal microscopy revealed a broader staining of occludin and E-cadherin following IFNalpha treatment, with prominent staining at the basal cell pole in addition to localization at the junctional region. A marked increase in phosphotyrosine staining along the apico-lateral cell border was detected after IFNalpha treatment. CONCLUSIONS: These findings provide evidence that IFNalpha can directly affect barrier function in renal epithelial cells. The mechanisms involve enhanced tyrosine phosphorylation and overexpression and possibly displacement or missorting of the junctional proteins occludin and E-cadherin.


Subject(s)
Interferon-alpha/pharmacology , Kidney Tubules, Proximal/drug effects , Kidney Tubules, Proximal/physiology , Tight Junctions/drug effects , Tight Junctions/physiology , Animals , Cadherins/metabolism , Cell Membrane Permeability/drug effects , Electric Impedance , Interferon alpha-2 , Kidney Tubules, Proximal/ultrastructure , LLC-PK1 Cells , Membrane Proteins/metabolism , Microscopy, Electron , Microscopy, Fluorescence , Occludin , Phosphoproteins/metabolism , Phosphorylation , Recombinant Proteins , Swine , Tight Junctions/ultrastructure , Tyrosine/metabolism , Zonula Occludens-1 Protein
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