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1.
J Hypertens ; 41(8): 1290-1297, 2023 08 01.
Article in English | MEDLINE | ID: mdl-37195245

ABSTRACT

OBJECTIVE: Postural orthostatic tachycardia syndrome (POTS) is associated with abnormal blood pressure (BP) regulation and increased prevalence of nocturnal nondipping. We hypothesized that nocturnal nondipping of BP is associated with elevated skin sympathetic nerve activity (SKNA) in POTS. METHOD: We used an ambulatory monitor to record SKNA and electrocardiogram from 79 participants with POTS (36 ±â€Š11 years, 72 women), including 67 with simultaneous 24-h ambulatory BP monitoring. RESULTS: Nocturnal nondipping of BP was present in 19 of 67 (28%) participants. The nondipping group had a higher average SKNA (aSKNA) from midnight of day 1 to 0100 h on day 2 than the dipping group ( P  = 0.016, P  = 0.030, respectively). The differences (Δ) of aSKNA and mean BP between daytime and night-time were more significant in the dipping group compared with the nondipping group (ΔaSKNA 0.160 ±â€Š0.103 vs. 0.095 ±â€Š0.099 µV, P  = 0.021, and Δmean BP 15.0 ±â€Š5.2 vs. 4.9 ±â€Š4.2 mmHg, P  < 0.001, respectively). There were positive correlations between ΔaSKNA and standing norepinephrine (NE) (r = 0.421, P  = 0.013) and the differences between standing and supine NE levels ( r  = 0.411, P  = 0.016). There were 53 (79%) patients with SBP less than 90 mmHg and 61 patients (91%) with DBP less than 60 mmHg. These hypotensive episodes were associated with aSKNA of 0.936 ±â€Š0.081 and 0.936 ±â€Š0.080 µV, respectively, which were both significantly lower than the nonhypotensive aSKNA (1.034 ±â€Š0.087 µV, P  < 0.001 for both) in the same patient. CONCLUSION: POTS patients with nocturnal nondipping have elevated nocturnal sympathetic tone and blunted reduction of SKNA between day and night. Hypotensive episodes were associated with reduced aSKNA.


Subject(s)
Hypertension , Postural Orthostatic Tachycardia Syndrome , Female , Humans , Blood Pressure/physiology , Blood Pressure Monitoring, Ambulatory , Circadian Rhythm/physiology , Electrocardiography , Norepinephrine , Male , Adult , Middle Aged
2.
Cell Host Microbe ; 17(5): 653-61, 2015 May 13.
Article in English | MEDLINE | ID: mdl-25974304

ABSTRACT

Although type I interferon (IFN-I) is thought to be beneficial against microbial infections, persistent viral infections are characterized by high interferon signatures suggesting that IFN-I signaling may promote disease pathogenesis. During persistent lymphocytic choriomeningitis virus (LCMV) infection, IFNα and IFNß are highly induced early after infection, and blocking IFN-I receptor (IFNAR) signaling promotes virus clearance. We assessed the specific roles of IFNß versus IFNα in controlling LCMV infection. While blockade of IFNß alone does not alter early viral dissemination, it is important in determining lymphoid structure, lymphocyte migration, and anti-viral T cell responses that lead to accelerated virus clearance, approximating what occurs during attenuation of IFNAR signaling. Comparatively, blockade of IFNα was not associated with improved viral control, but with early dissemination of virus. Thus, despite their use of the same receptor, IFNß and IFNα have unique and distinguishable biologic functions, with IFNß being mainly responsible for promoting viral persistence.


Subject(s)
Interferon-alpha/metabolism , Interferon-beta/metabolism , Lymphocytic Choriomeningitis/immunology , Lymphocytic Choriomeningitis/virology , Lymphocytic choriomeningitis virus/immunology , Signal Transduction , Animals , Disease Models, Animal , Mice, Inbred C57BL , Mice, Knockout
3.
Virology ; 442(2): 114-21, 2013 Aug 01.
Article in English | MEDLINE | ID: mdl-23684417

ABSTRACT

Lassa virus (LASV) is a BSL-4 restricted agent. To allow study of infection by LASV under BSL-2 conditions, we generated a recombinant virus in which the LASV glycoprotein (Gp) was placed on the backbone of lymphocytic choriomeningitis virus (LCMV) Cl13 nucleoprotein, Z and polymerase genes (rLCMV Cl13/LASV Gp). The recombinant virus displayed high tropism for dendritic cells following in vitro or in vivo infection. Inoculation of immunocompetent adults resulted in an acute infection, generation of virus-specific CD8(+) T cells and clearance of the infection. Inoculation of newborn mice with rLCMV Cl13/LASV Gp resulted in a life-long persistent infection. Interestingly, adoptive transfer of rLCMV Cl13/LASV Gp immune memory cells into such persistently infected mice failed to purge virus but, in contrast, cleared virus from mice persistently infected with wt LCMV Cl13.


Subject(s)
Lassa Fever/pathology , Lassa Fever/virology , Lassa virus/genetics , Lassa virus/pathogenicity , Lymphocytic choriomeningitis virus/genetics , Recombination, Genetic , Animals , Animals, Newborn , CD8-Positive T-Lymphocytes/immunology , Chronic Disease , Dendritic Cells/virology , Disease Models, Animal , Lassa Fever/immunology , Lassa virus/immunology , Lassa virus/physiology , Mice , Mice, Inbred C57BL , Viral Envelope Proteins/genetics , Viral Tropism
4.
Science ; 340(6129): 207-11, 2013 Apr 12.
Article in English | MEDLINE | ID: mdl-23580529

ABSTRACT

During persistent viral infections, chronic immune activation, negative immune regulator expression, an elevated interferon signature, and lymphoid tissue destruction correlate with disease progression. We demonstrated that blockade of type I interferon (IFN-I) signaling using an IFN-I receptor neutralizing antibody reduced immune system activation, decreased expression of negative immune regulatory molecules, and restored lymphoid architecture in mice persistently infected with lymphocytic choriomeningitis virus. IFN-I blockade before and after establishment of persistent virus infection resulted in enhanced virus clearance and was CD4 T cell-dependent. Hence, we demonstrate a direct causal link between IFN-I signaling, immune activation, negative immune regulator expression, lymphoid tissue disorganization, and virus persistence. Our results suggest that therapies targeting IFN-I may help control persistent virus infections.


Subject(s)
Arenaviridae Infections/immunology , Arenaviridae Infections/virology , Interferon Type I/metabolism , Lymphocytic choriomeningitis virus/immunology , Lymphocytic choriomeningitis virus/physiology , Signal Transduction , Animals , Antibodies, Viral/blood , Arenaviridae Infections/pathology , B7-H1 Antigen/metabolism , CD4-Positive T-Lymphocytes/immunology , Cytokines/metabolism , Dendritic Cells/immunology , Dendritic Cells/virology , Female , Immune Tolerance , Interferon Type I/immunology , Interleukin-10/metabolism , Lymphocytes/immunology , Lymphocytes/virology , Male , Mice , Mice, Inbred C57BL , Receptor, Interferon alpha-beta/immunology , Receptor, Interferon alpha-beta/metabolism , Spleen/immunology , Spleen/pathology , Viremia
5.
J Virol ; 85(15): 7928-32, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21613399

ABSTRACT

The recombinant engineering of trisegmented lymphocytic choriomeningitis virus (LCMV) to express two genes of interest was recently reported. We used this technology to efficiently express green fluorescent protein (GFP) and the immunoregulatory gene product interleukin-10 (IL-10) in vitro, assess IL-10 function in vivo during viral meningitis, and generate specific, robust monoclonal antibody responses to IL-10. Tripartite viruses were attenuated in wild-type and TLR7(-/-) mice. However, IFNAR1(-/-) mice sustained systemic viral replication when 2 nucleotide substitutions from a persistent LCMV variant were present. These findings demonstrate the utility of tripartite LCMV in vitro and in vivo to study genes in the context of a well-defined model system.


Subject(s)
Antibodies, Viral/biosynthesis , Lymphocytic choriomeningitis virus/physiology , Recombination, Genetic , Viral Proteins/biosynthesis , Animals , Lymphocytic choriomeningitis virus/genetics , Lymphocytic choriomeningitis virus/immunology , Lymphocytic choriomeningitis virus/metabolism , Mice , Receptor, Interferon alpha-beta/biosynthesis , Receptor, Interferon alpha-beta/genetics
6.
Proc Natl Acad Sci U S A ; 108(7): 2969-74, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21270335

ABSTRACT

Arenaviruses are a major cause of hemorrhagic fevers endemic to Sub-Saharan Africa and South America, and thus a major public health and medical concern. The prototypic arenavirus lymphocytic choriomeningitis virus (LCMV) is widely used as a model system for studying persistent and acute infections, as well as for gaining an understanding of mammalian immune function. When originally characterized three decades ago, the LCMV isolate, Armstrong, which causes an acute infection in adult mice, was found to differ from the LCMV Clone 13 strain that causes a persistent infection by two amino acid changes, one within the virus surface glycoprotein (GP1: F260L) and the other within the virus L polymerase (K1076Q). Mutation F260L was considered solely responsible for the exceptionally strong binding affinity of Clone 13 (L at GP1 260) to its cellular receptor, α-dystroglycan, which among cells of the immune system is preferentially expressed on dendritic cells, and consequently, alters dendritic cell function leading to viral persistence. Recently, we noted a previously overlooked nucleotide difference between these two strains that results in an additional amino acid change in GP1, N176D. To investigate the potential contribution of this newly identified mutation to the Clone 13 phenotype, we used reverse-genetics approaches to generate recombinant LCM viruses with each of these individual mutations. Phenotypic characterization of these rLCMV showed that mutation F260L, but not N176D, in the GP1 of LCMV is essential for mediating the long-term persistence of Clone 13 infections. This work emphasizes the importance of subtle differences in viral strains that determine disease outcomes.


Subject(s)
Dendritic Cells/virology , Lymphocytic choriomeningitis virus/genetics , Phenotype , Point Mutation/genetics , Viral Fusion Proteins/genetics , Animals , Cell Line , Dendritic Cells/metabolism , Dystroglycans/metabolism , Enzyme-Linked Immunosorbent Assay , Flow Cytometry , Luminescent Measurements , Lymphocytic choriomeningitis virus/metabolism , Mice , Mice, Inbred C57BL , Virus Internalization
7.
Virology ; 411(1): 1-8, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-21227476

ABSTRACT

Earlier studies indicated that transgenic (tg) mice engineered to express prion protein (PrP) lacking the glycophosphatidylinositol (GPI⁻/⁻) membrane anchor formed abnormal proteinase-resistant prion (PrPsc) amyloid deposits in their brains and hearts when infected with the RML strain of murine scrapie. In contrast, RML scrapie infection of normal mice with a GPI-anchored PrP did not deposit amyloid with PrPsc in the brain or the heart. Here we report that scrapie-infected GPI⁻/⁻ PrP tg mice also deposit PrP and transmissible infectious material in the gut, kidneys, and islets of Langerhans. Similar to previously reported amyloid deposits in the brain and heart, amyloid deposits were found in the gut; however, no amyloid deposited in the islets. By high-resolution electron microscopy, we show PrP is located primarily in α cells and also ß cells. Islets contain abundant insulin and there is no abnormality in glucose metabolism in infected GPI⁻/⁻ PrP tg mice.


Subject(s)
Glycosylphosphatidylinositols/deficiency , Prion Diseases/veterinary , Prions/metabolism , Rodent Diseases/pathology , Amyloid/analysis , Animal Structures/pathology , Animals , Female , Male , Mice , Mice, Transgenic , Prion Diseases/pathology , Prion Proteins
8.
Virology ; 411(2): 163-9, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21183197

ABSTRACT

Hemorrhagic fevers caused by arenaviruses are among the most devastating emerging human diseases. Considering the number of individuals affected, the current lack of a licensed vaccine, and the limited therapeutic options, arenaviruses are arguably among the most neglected tropical pathogens and the development of efficacious anti-arenaviral drugs is of high priority. Over the past years significant efforts have been undertaken to identify novel potent inhibitors of arenavirus infection. High throughput screening of small molecule libraries employing pseudotype platforms led to the discovery of several potent and broadly active inhibitors of arenavirus cell entry that are effective against the major hemorrhagic arenaviruses. Mechanistic studies revealed that these novel entry inhibitors block arenavirus membrane fusion and provided novel insights into the unusual mechanism of this process. The success of these approaches highlights the power of small molecule screens in antiviral drug discovery and establishes arenavirus membrane fusion as a robust drug target. These broad screenings have been complemented by strategies targeting cellular factors involved in productive arenavirus infection. Approaches targeting the cellular protease implicated in maturation of the fusion-active viral envelope glycoprotein identified the proteolytic processing of the arenavirus glycoprotein precursor as a novel and promising target for anti-arenaviral strategies.


Subject(s)
Antiviral Agents/pharmacology , Arenavirus/drug effects , Arenavirus/pathogenicity , Biomedical Research/trends , Drug Evaluation, Preclinical/methods , High-Throughput Screening Assays , Humans , Virus Internalization/drug effects
9.
Bioorg Med Chem Lett ; 19(14): 3771-4, 2009 Jul 15.
Article in English | MEDLINE | ID: mdl-19428249

ABSTRACT

The comparative characterization of a series of 4-acyl-1,6-dialkylpiperazin-2-ones as potent cell entry inhibitors of the hemorrhagic fever arenavirus Lassa (LASV) is disclosed. The resolution and examination of the individual enantiomers of the prototypical LASV cell entry inhibitor 3 (16G8) is reported and the more potent (-)-enantiomer was found to be 15-fold more active than the corresponding (+)-enantiomer. The absolute configuration of (-)-3 was established by asymmetric synthesis of the active inhibitor (-)-(S)-3 (lassamycin-1). A limited deletion scan of lassamycin-1 defined key structural features required of the prototypical inhibitors.


Subject(s)
Antiviral Agents/chemistry , Benzofurans/chemistry , Lassa virus/drug effects , Piperazines/chemistry , Virus Internalization/drug effects , Antiviral Agents/chemical synthesis , Antiviral Agents/pharmacology , Benzofurans/chemical synthesis , Cell Line, Tumor , Humans , Piperazines/chemical synthesis , Stereoisomerism
10.
J Biol Chem ; 283(27): 18734-42, 2008 Jul 04.
Article in English | MEDLINE | ID: mdl-18474596

ABSTRACT

Viral hemorrhagic fevers caused by the arenaviruses Lassa virus in Africa and Machupo, Guanarito, Junin, and Sabia virus in South America are among the most devastating emerging human diseases with fatality rates of 15-35% and a limited antiviral therapeutic repertoire available. Here we used high throughput screening of synthetic combinatorial small molecule libraries to identify inhibitors of arenavirus infection using pseudotyped virion particles bearing the glycoproteins (GPs) of highly pathogenic arenaviruses. Our screening efforts resulted in the discovery of a series of novel small molecule inhibitors of viral entry that are highly active against both Old World and New World hemorrhagic arenaviruses. We observed potent inhibition of infection of human and primate cells with live hemorrhagic arenaviruses (IC(50)=500-800 nm). Investigations of the mechanism of action revealed that the candidate compounds efficiently block pH-dependent fusion by the arenavirus GPs (IC(50) of 200-350 nm). Although our lead compounds were potent against phylogenetically distant arenaviruses, they did not show activity against other enveloped viruses with class I viral fusion proteins, indicating specificity for arenavirus GP-mediated membrane fusion.


Subject(s)
Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Arenaviridae Infections/drug therapy , Arenavirus , Communicable Diseases, Emerging/drug therapy , Hemorrhagic Fevers, Viral/drug therapy , Viral Fusion Proteins/antagonists & inhibitors , Animals , Antiviral Agents/therapeutic use , Chlorocebus aethiops , Drug Evaluation, Preclinical , HeLa Cells , Humans , Vero Cells , Virion/metabolism
11.
J Virol ; 82(12): 6045-51, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18400865

ABSTRACT

The cellular proprotein convertase site 1 protease (S1P) has been implicated in the proteolytic processing of the glycoproteins (GPs) of Old World arenaviruses. Here we report that S1P is also involved in the processing of the GPs of the genetically more-distant South American hemorrhagic fever viruses Guanarito, Machupo, and Junin. Efficient cleavage of Guanarito virus GP, whose protease recognition sites deviate from the reported S1P consensus sequence, indicates a broader specificity of S1P than anticipated. Lack of GP processing of Junin virus dramatically reduced production of infectious virus and prevented cell-to-cell propagation. Infection of S1P-deficient cells resulted in viral persistence over several weeks without the emergence of escape variants able to use other cellular proteases for GP processing.


Subject(s)
Arenaviruses, New World/metabolism , Glycoproteins/metabolism , Proprotein Convertases/metabolism , Protein Processing, Post-Translational , Serine Endopeptidases/metabolism , Amino Acid Sequence , Animals , CHO Cells , Cell Line , Chlorocebus aethiops , Cricetinae , Cricetulus , Green Fluorescent Proteins/metabolism , Humans , Kidney/cytology , Luciferases/analysis , Luciferases/metabolism , Molecular Sequence Data , Mutation , Proprotein Convertases/chemistry , Proprotein Convertases/genetics , Protein Precursors/chemistry , Protein Precursors/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics , Transfection , Vero Cells
12.
J Exp Med ; 205(3): 533-41, 2008 Mar 17.
Article in English | MEDLINE | ID: mdl-18332180

ABSTRACT

Therapeutic vaccination is a potentially powerful strategy to establish immune control and eradicate persistent viral infections. Large and multifunctional antiviral T cell responses are associated with control of viral persistence; however, for reasons that were mostly unclear, current therapeutic vaccination approaches to restore T cell immunity and control viral infection have been ineffective. Herein, we confirmed that neutralization of the immunosuppressive factor interleukin (IL)-10 stimulated T cell responses and improved control of established persistent lymphocytic choriomeningitis virus (LCMV) infection. Importantly, blockade of IL-10 also allowed an otherwise ineffective therapeutic DNA vaccine to further stimulate antiviral immunity, thereby increasing T cell responses and enhancing clearance of persistent LCMV replication. We therefore propose that a reason that current therapeutic vaccination strategies fail to resurrect/sustain T cell responses is because they do not alleviate the immunosuppressive environment. Consequently, blocking key suppressive factors could render ineffective vaccines more efficient at improving T cell immunity, and thereby allow immune-mediated control of persistent viral infection.


Subject(s)
Arenaviridae Infections/immunology , Interleukin-10/antagonists & inhibitors , Lymphocytic choriomeningitis virus/genetics , Lymphocytic choriomeningitis virus/immunology , T-Lymphocytes/immunology , T-Lymphocytes/virology , Vaccines, DNA/pharmacology , Viral Vaccines/pharmacology , Animals , Arenaviridae Infections/virology , Immunosuppression Therapy , Mice , Mice, Inbred C57BL , Mice, Transgenic , Receptors, Interleukin-10/antagonists & inhibitors , Vaccination , Vaccines, DNA/genetics , Viral Vaccines/genetics
13.
Virology ; 372(1): 107-17, 2008 Mar 01.
Article in English | MEDLINE | ID: mdl-18022208

ABSTRACT

The prototypic arenavirus lymphocytic choriomeningitis virus (LCMV) represents a powerful experimental model for the study of the basic virology and pathogenesis of arenaviruses. In the present study, we used the LCMV model to evaluate the anti-viral potential of phosphorothioate oligonucleotides against arenaviruses. Our findings indicate that amphipathic DNA polymers (APs) are potent inhibitors of infection with a series of LCMV isolates with IC(50) in the low nanomolar range. APs target the surface glycoprotein (GP) of LCMV and block viral entry and cell-cell propagation of the virus, without affecting later steps in replication or release of progeny virus from infected cells. The anti-viral action of APs is sequence-independent but is critically dependent on their size and hydrophobicity. Mechanistically, we provide evidence that APs disrupt the interaction between LCMVGP and its cellular receptor, alpha-dystroglycan. Exposure of LCMV to APs does not affect the stability of the GP virion spike and has no effect on the conformation of a neutralizing antibody epitope, suggesting rather subtle changes in the conformation and/or conformational dynamics of the viral GP.


Subject(s)
Antiviral Agents/pharmacology , Lymphocytic choriomeningitis virus/drug effects , Phosphorothioate Oligonucleotides/pharmacology , Virus Internalization/drug effects , Animals , Cell Line , Chlorocebus aethiops , Cricetinae , Dystroglycans/metabolism , Humans , Hydrophobic and Hydrophilic Interactions , Lymphocytic choriomeningitis virus/pathogenicity , Membrane Glycoproteins/metabolism , Vero Cells
14.
Tetrahedron ; 63(17): 3553-3566, 2007 Apr 23.
Article in English | MEDLINE | ID: mdl-17955055

ABSTRACT

The RecA protein of Escherichia coli plays a crucial roles in DNA recombination and repair, as well as various aspects of bacterial pathogenicity. The formation of a RecA-ATP-ssDNA complex initiates all RecA activities and yet a complete structural and mechanistic description of this filament has remained elusive. An analysis of RecA-DNA interactions was performed using fluorescently labeled oligonucleotides. A direct comparison was made between fluorescein and several fluorescent nucleosides. The fluorescent guanine analog 6-methylisoxanthopterin (6MI) demonstrated significant advantages over the other fluorophores and represents an important new tool for characterizing RecA-DNA interactions.

15.
Anal Biochem ; 367(2): 247-58, 2007 Aug 15.
Article in English | MEDLINE | ID: mdl-17601483

ABSTRACT

The bacterial RecA protein has been implicated in the evolution of antibiotic resistance in pathogens, which is an escalating problem worldwide. The discovery of small molecules that can selectively modulate RecA's activities can be exploited to tease apart its roles in the de novo development and transmission of antibiotic resistance genes. Toward the goal of discovering small-molecule ligands that can prevent either the assembly of an active RecA-DNA filament or its subsequent ATP-dependent motor activities, we report the design and initial validation of a pair of rapid and robust screening assays suitable for the identification of inhibitors of RecA activities. One assay is based on established methods for monitoring ATPase enzyme activity and the second is a novel assay for RecA-DNA filament assembly using fluorescence polarization. Taken together, the assay results reveal complementary sets of agents that can either suppress selectively only the ATP-driven motor activities of the RecA-DNA filament or prevent assembly of active RecA-DNA filaments altogether. The screening assays can be readily configured for use in future automated high-throughput screening projects to discover potent inhibitors that may be developed into novel adjuvants for antibiotic chemotherapy that moderate the development and transmission of antibiotic resistance genes and increase the antibiotic therapeutic index.


Subject(s)
DNA-Binding Proteins/analysis , Enzyme Inhibitors/analysis , Escherichia coli Proteins/analysis , Rec A Recombinases/analysis , Adenosine Triphosphatases/analysis , Colorimetry , Fluorescent Dyes , NAD/metabolism , Rec A Recombinases/antagonists & inhibitors
16.
Chembiochem ; 7(8): 1265-78, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16847846

ABSTRACT

The Escherichia coli RecA protein is the prototype of a class of proteins that play central roles in genomic repair and recombination in all organisms. The unresolved mechanistic strategy by which RecA aligns a single strand of DNA with a duplex DNA and mediates a DNA strand switch is central to understanding homologous recombination. We explored the mechanism of RecA-mediated DNA-strand exchange using oligonucleotide substrates with the intrinsic fluorophore 6-methylisoxanthopterin. Pre-steady-state spectrofluorometric analysis elucidated the earliest transient intermediates formed during recombination and delineated the mechanistic strategy by which RecA facilitates this process. The structural features of the first detectable intermediate and the energetic characteristics of its formation were consistent with interactions between a few bases of the single-stranded DNA and the minor groove of a locally melted or stretched duplex DNA. Further analysis revealed RecA to be an unusual enzyme in that entropic rather than enthalpic contributions dominate its catalytic function, and no unambiguously active role for the protein was detected in the earliest molecular events of recombination. The data best support the conclusion that the mechanistic strategy of RecA likely relies on intrinsic DNA dynamics.


Subject(s)
DNA/chemistry , DNA/genetics , Entropy , Rec A Recombinases/chemistry , Rec A Recombinases/metabolism , Recombination, Genetic/genetics , Kinetics , Models, Genetic , Models, Molecular , Nucleic Acid Conformation , Protein Structure, Tertiary , Rec A Recombinases/genetics , Temperature
17.
J Mol Biol ; 360(2): 343-59, 2006 Jul 07.
Article in English | MEDLINE | ID: mdl-16756994

ABSTRACT

Despite intense effort over the past 30 years, the molecular determinants of sequence selectivity in RecA-mediated homologous recombination have remained elusive. Here, we describe when and how sequence homology is recognized between DNA strands during recombination in the context of a kinetic model for RecA-mediated DNA strand exchange. We characterized the transient intermediates of the reaction using pre-steady-state kinetic analysis of strand exchange using oligonucleotide substrates containing a single fluorescent G analog. We observed that the reaction system was sensitive to heterology between the DNA substrates; however, such a "heterology effect" was not manifest when functional groups were added to or removed from the edges of the base-pairs facing the minor groove of the substrate duplex. Hence, RecA-mediated recombination must occur without the involvement of a triple helix, even as a transient intermediate in the process. The fastest detectable reaction phase was accelerated when the structure or stability of the substrate duplex was perturbed by internal mismatches or the replacement of G.C by I.C base-pairs. These findings indicate that the sequence specificity in recombination is achieved by Watson-Crick pairing in the context of base-pair dynamics inherent to the extended DNA structure bound by RecA during strand exchange.


Subject(s)
DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Rec A Recombinases/metabolism , Recombination, Genetic/genetics , Base Pair Mismatch/genetics , Base Pairing/genetics , Base Sequence , DNA Methylation , Escherichia coli/enzymology , Kinetics , Models, Genetic , Molecular Sequence Data , Nucleic Acid Heteroduplexes/chemistry , Oligodeoxyribonucleotides/chemistry , Oligodeoxyribonucleotides/genetics
18.
Biochemistry ; 45(14): 4502-13, 2006 Apr 11.
Article in English | MEDLINE | ID: mdl-16584186

ABSTRACT

The roles of the RecA protein in the survival of bacteria and the evolution of resistance to antibiotics make it an attractive target for inhibition by small molecules. The activity of RecA is dependent on the formation of a nucleoprotein filament on single-stranded DNA that hydrolyzes ATP. We probed the nucleotide binding site of the active RecA protein using modified nucleotide triphosphates to discern key structural elements of the nucleotide and of the binding site that result in the activation of RecA for NTP hydrolysis. Our results show that the RecA-catalyzed hydrolysis of a given nucleotide triphosphate or analogue thereof is exquisitely sensitive to certain structural elements of both the base and ribose moieties. Furthermore, our ligand-based approach to probing the RecA ATP binding site indicated that the binding of nucleotides by RecA was found to be conformationally selective. Using a binding screen that can be readily adapted to high-throughput techniques, we were able to segregate nucleotides that interact with RecA into two classes: (1) NTPs that preferentially bind the active nucleoprotein filament conformation and either serve as substrates for or competitively inhibit hydrolysis and (2) nonsubstrate NTPs that preferentially bind the inactive RecA conformation and facilitate dissociation of the RecA-DNA species. These results are discussed in the context of a recent structural model for the active RecA nucleoprotein filament and provide us with important information for the design of potent, conformationally selective modulators of RecA activities.


Subject(s)
Adenosine Triphosphate/metabolism , Binding Sites/drug effects , Molecular Conformation , Nucleotides/metabolism , Rec A Recombinases/metabolism , Adenosine Triphosphatases/antagonists & inhibitors , DNA, Single-Stranded/metabolism , Ligands , Models, Molecular , Rec A Recombinases/antagonists & inhibitors , Structure-Activity Relationship
19.
Biochemistry ; 45(14): 4514-29, 2006 Apr 11.
Article in English | MEDLINE | ID: mdl-16584187

ABSTRACT

The Escherichia coli RecA protein is the prototypical member of a family of molecular motors that transduces ATP binding and hydrolysis for mechanical function. While many general mechanistic features of RecA action are known, specific structural and functional insights into the molecular basis of RecA activation remain elusive. Toward a more complete understanding of the interdependence between ATP and DNA binding by RecA, we report the characterization of a mutant RecA protein wherein the aspartate residue at position 100 within the ATP binding site is replaced by arginine. Physiologically, D100R RecA was characterized by an inducible, albeit reduced, activation of the SOS response and a diminished ability to promote cellular survival after UV irradiation. Biochemically, the D100R substitution caused a surprisingly modest perturbation of RecA-ATP interactions and an unexpected and significant decrease in the affinity of RecA for ssDNA. Moreover, in vitro assays of RecA activities requiring the coordinated processing of ATP and DNA revealed (1) a 2-5-fold decrease in steady-state turnover of ATP; (2) no formation of mixed nucleoprotein filaments when wild-type and D100R RecA compete for limiting ssDNA; and (3) no formation of strand exchange reaction products. Taken together, these results suggest that the D100R mutational effects on isolated RecA activities combine synergistically to perturb its higher-order functions. We conclude that the replacement of Asp100 resulted in a change in the electrostatic complementarity between RecA monomers during active filament assembly that prevents the protein from fully accessing the active multimeric state.


Subject(s)
Nucleotides/metabolism , Rec A Recombinases/metabolism , Static Electricity , Substrate Specificity/drug effects , Adenosine Diphosphate/analogs & derivatives , Adenosine Diphosphate/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Aspartic Acid/physiology , DNA, Single-Stranded/metabolism , Models, Molecular , Protein Conformation , Rec A Recombinases/genetics , ortho-Aminobenzoates/metabolism
20.
Biopolymers ; 81(6): 473-96, 2006 Apr 15.
Article in English | MEDLINE | ID: mdl-16421856

ABSTRACT

The Escherichia coli RecA protein is the prototype of a class of proteins playing a central role in genomic repair and recombination in all organisms. The unresolved mechanistic strategy by which RecA aligns a single strand of DNA with a duplex DNA and mediates a DNA strand switch is central to understanding its recombinational activities. Toward a molecular-level understanding of RecA-mediated DNA strand exchange, we explored its mechanism using oligonucleotide substrates and the intrinsic fluorescence of 6-methylisoxanthopterin (6MI). Steady- and presteady-state spectrofluorometric data demonstrate that the reaction proceeds via a sequential four-step mechanism comprising a rapid, bimolecular association step followed by three slower unimolecular steps. Previous authors have proposed multistep mechanisms involving two or three steps. Careful analysis of the differences among the experimental systems revealed a previously undiscovered intermediate (N1) whose formation may be crucial in the kinetic discrimination of homologous and heterologous sequences. This observation has important implications for probing the fastest events in DNA strand exchange using 6MI to further elucidate the molecular mechanisms of recombination and recombinational repair.


Subject(s)
DNA/chemistry , DNA/metabolism , Models, Biological , Rec A Recombinases/chemistry , Rec A Recombinases/physiology , Base Sequence , Fluorescent Dyes/chemistry , Kinetics , Molecular Sequence Data , Molecular Structure , Multiprotein Complexes/chemistry
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