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1.
Curr Biol ; 34(4): 825-840.e7, 2024 02 26.
Article in English | MEDLINE | ID: mdl-38301650

ABSTRACT

Legumes produce specialized root nodules that are distinct from lateral roots in morphology and function, with nodules intracellularly hosting nitrogen-fixing bacteria. We have previously shown that a lateral root program underpins nodule initiation, but there must be additional developmental regulators that confer nodule identity. Here, we show two members of the LIGHT-SENSITIVE SHORT HYPOCOTYL (LSH) transcription factor family, predominantly known to define shoot meristem complexity and organ boundaries, function as regulators of nodule organ identity. In parallel to the root initiation program, LSH1/LSH2 recruit a program into the root cortex that mediates the divergence into nodules, in particular with cell divisions in the mid-cortex. This includes regulation of auxin and cytokinin, promotion of NODULE ROOT1/2 and Nuclear Factor YA1, and suppression of the lateral root program. A principal outcome of LSH1/LSH2 function is the production of cells able to accommodate nitrogen-fixing bacteria, a key feature unique to nodules.


Subject(s)
Medicago truncatula , Medicago truncatula/genetics , Root Nodules, Plant/genetics , Root Nodules, Plant/microbiology , Hypocotyl/genetics , Hypocotyl/metabolism , Cytokinins/genetics , Meristem/metabolism , Symbiosis/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Regulation, Plant , Plant Roots/metabolism
2.
Int J Mol Sci ; 24(16)2023 Aug 15.
Article in English | MEDLINE | ID: mdl-37628997

ABSTRACT

Ubiquitin-specific protease 2 (USP2) is a deubiquitinase belonging to the USPs subfamily. USP2 has been known to display various biological effects including tumorigenesis and inflammation. Therefore, we aimed to examine the sensitization effect of USP2 in TRAIL-mediated apoptosis. The pharmacological inhibitor (ML364) and siRNA targeting USP2 enhanced TNF-related apoptosis-inducing ligand (TRAIL)-induced cancer cell death, but not normal cells. Mechanistically, USP2 interacted with survivin, and ML364 degraded survivin protein expression by increasing the ubiquitination of survivin. Overexpression of survivin or USP2 significantly prevented apoptosis through cotreatment with ML364 and TRAIL, whereas a knockdown of USP2 increased sensitivity to TRAIL. Taken together, our data suggested that ML364 ubiquitylates and degrades survivin, thereby increasing the reactivity to TRAIL-mediated apoptosis in cancer cells.


Subject(s)
Neoplasms , TNF-Related Apoptosis-Inducing Ligand , Humans , Down-Regulation , TNF-Related Apoptosis-Inducing Ligand/genetics , Survivin/genetics , Cell Death , Neoplasms/genetics , Ubiquitin Thiolesterase/genetics
4.
Zootaxa ; 5285(1): 196-200, 2023 May 15.
Article in English | MEDLINE | ID: mdl-37518709

ABSTRACT

Two new species, Stericta jaeshini Kim & Bae, sp. nov. and S. atroaurantiaca Kim & Bae, sp. nov. are described from Southeast Asia. About 50 species of the genus Stericta have been recorded from Southeast Asia, but it has not been recorded to occur in Laos and Cambodia previously. We record the presence of this genus in these two countries for the first time in this study. Illustrations of adults and genitalia of examined species are provided. v.


Subject(s)
Lepidoptera , Moths , Animals , Laos , Cambodia , Animal Distribution , Genitalia
5.
Nat Commun ; 13(1): 6421, 2022 10 28.
Article in English | MEDLINE | ID: mdl-36307431

ABSTRACT

Many plants associate with arbuscular mycorrhizal fungi for nutrient acquisition, while legumes also associate with nitrogen-fixing rhizobial bacteria. Both associations rely on symbiosis signaling and here we show that cereals can perceive lipochitooligosaccharides (LCOs) for activation of symbiosis signaling, surprisingly including Nod factors produced by nitrogen-fixing bacteria. However, legumes show stringent perception of specifically decorated LCOs, that is absent in cereals. LCO perception in plants is activated by nutrient starvation, through transcriptional regulation of Nodulation Signaling Pathway (NSP)1 and NSP2. These transcription factors induce expression of an LCO receptor and act through the control of strigolactone biosynthesis and the karrikin-like receptor DWARF14-LIKE. We conclude that LCO production and perception is coordinately regulated by nutrient starvation to promote engagement with mycorrhizal fungi. Our work has implications for the use of both mycorrhizal and rhizobial associations for sustainable productivity in cereals.


Subject(s)
Medicago truncatula , Mycorrhizae , Rhizobium , Medicago truncatula/microbiology , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Mycorrhizae/physiology , Symbiosis , Rhizobium/metabolism , Nutrients
7.
J Med Virol ; 94(12): 6078-6090, 2022 12.
Article in English | MEDLINE | ID: mdl-35941087

ABSTRACT

Single-cycle infectious virus can elicit close-to-natural immune response and memory. One approach to generate single-cycle severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is through deletion of structural genes such as spike (S) and nucleocapsid (N). Transcomplementation of the resulting ΔS or ΔN virus through enforced expression of S or N protein in the cells gives rise to a live but unproductive virus. In this study, ΔS and ΔN BAC clones were constructed and their live virions were rescued by transient expression of S and N proteins from the ancestral and the Omicron strains. ΔS and ΔN virions were visualized by transmission electron microscopy. Virion production of ΔS was more efficient than that of ΔN. The coated S protein from ΔS was delivered to infected cells in which the expression of N protein was also robust. In contrast, expression of neither S nor N was detected in ΔN-infected cells. ΔS underwent viral RNA replication, induced type I interferon (IFN) response, but did not form plaques. Despite RNA replication in cells, ΔS infection did not produce viral progeny in culture supernatant. Interestingly, viral RNA replication was not further enhanced upon overexpression of S protein. Taken together, our work provides a versatile platform for development of single-cycle vaccines for SARS-CoV-2.


Subject(s)
COVID-19 , Interferon Type I , COVID-19 Vaccines , Humans , Interferon Type I/genetics , RNA, Viral/genetics , Replicon , SARS-CoV-2/genetics , Spike Glycoprotein, Coronavirus/genetics
8.
Asia Pac Allergy ; 12(1): e8, 2022 Jan.
Article in English | MEDLINE | ID: mdl-35174059

ABSTRACT

Due to global concerns over coronavirus disease 2019 (COVID-19) vaccine-associated allergic reactions; the Hong Kong Institute of Allergy (HKIA) formulated an initial set of consensus statements (CS) on COVID-19 Vaccine Allergy Safety (VAS) in early 2021. Following accumulation of both local and international experience on and COVID-19 VAS, the HKIA task force reformed to update the Hong Kong consensus on COVID-19 VAS. A nominated task force of experts managing patients with drug and vaccine allergies in Hong Kong formulated the updated CS by unanimous decision. A total of 9 new statements were established. Individuals with history of food allergies and anaphylaxis unrelated to the components of COVID-19 vaccines do not require allergist review prior to vaccination. Individuals with history suspicious of an excipient allergy may now be vaccinated with a non-PEG containing vaccine without prior allergist assessment. Individuals with suspected mild allergic reactions following prior COVID-19 vaccination can proceed with the next dose. Only individuals who present with immediate-type allergic reaction with systemic symptoms or more severe nonimmediate type reactions should defer their next dose until allergist review. The remaining statements regarding adequate safety during vaccination and advocation for legislative changes regarding excipient disclosure in Hong Kong remained unchanged from the prior CS. The updated CS are updated in accordance with local and international experience thus far and serve as guidance for local frontline healthcare providers to further promote safe COVID-19 vaccine uptake in Hong Kong.

9.
Eur Respir J ; 60(2)2022 08.
Article in English | MEDLINE | ID: mdl-35058244

ABSTRACT

In this review article we present the evidence to date supporting the role of the calcium-sensing receptor (CaSR) as a key, pluripotential molecular trigger for asthma and speculate on the likely benefits of topical therapy of asthma with negative allosteric modulators of the CaSR: calcilytics.


Subject(s)
Asthma , Receptors, Calcium-Sensing , Asthma/drug therapy , Calcium , Humans
10.
J Allergy Clin Immunol Glob ; 1(3): 145-153, 2022 Aug.
Article in English | MEDLINE | ID: mdl-37781268

ABSTRACT

Background: The prevalence of cockroach (CR) sensitization and its relevance as a trigger of allergy symptoms differs greatly in different geographic areas. Objective: This study aimed to compare molecular IgE reactivity profiles in CR-sensitized patients with perennial allergy symptoms from Hong Kong (HK) and Austria and identify the main primary sensitizers. Methods: IgE sensitization was assessed by skin prick test and/or IgE reactivity with CR extract. Molecular IgE reactivity profiles were analyzed via multiplex assay for sensitization to allergens and extracts from CR, house dust mite (HDM), shellfish, and 3 additional insect species. Results: HDM was the main primary sensitizer in both cohorts. In the HK group, genuine sensitization to CR was found in 45%, but none of the patients in the Austrian cohort was truly sensitized to that allergen source. Most patients from HK were cross-sensitized to other insects and/or shellfish, presumably by broad reactivity to tropomyosin and arginine kinase. About half of Austrian subjects lacked IgE to these pan-allergens, indicating co- but not cross-sensitization to insects and/or shellfish. Regarding IgE recognition frequencies, arginine kinases (64% HK, 10% Austria) and tropomyosins (42% HK, 15% Austria) were most frequently recognized; Bla g 4 (lipocalin) was detected in HK patients only (42%). Tropomyosin (Per a 7) was significantly more frequently recognized in patients with asthma. Sera from HDM-sensitized subjects from HK showed a higher proportion of sensitization to minor mite allergens. Conclusion: Molecular profiling identified differences between CR-sensitized allergic patients from HK and Austria in terms of primary sensitizers and molecular IgE reactivity patterns. Tropomyosin from American cockroach (Per a 7) was shown to be significantly associated with asthma symptoms and might be suitable as biomarker for more severe respiratory allergy symptoms.

11.
IEEE Trans Vis Comput Graph ; 28(1): 346-356, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34587050

ABSTRACT

Although we have seen a proliferation of algorithms for recommending visualizations, these algorithms are rarely compared with one another, making it difficult to ascertain which algorithm is best for a given visual analysis scenario. Though several formal frameworks have been proposed in response, we believe this issue persists because visualization recommendation algorithms are inadequately specified from an evaluation perspective. In this paper, we propose an evaluation-focused framework to contextualize and compare a broad range of visualization recommendation algorithms. We present the structure of our framework, where algorithms are specified using three components: (1) a graph representing the full space of possible visualization designs, (2) the method used to traverse the graph for potential candidates for recommendation, and (3) an oracle used to rank candidate designs. To demonstrate how our framework guides the formal comparison of algorithmic performance, we not only theoretically compare five existing representative recommendation algorithms, but also empirically compare four new algorithms generated based on our findings from the theoretical comparison. Our results show that these algorithms behave similarly in terms of user performance, highlighting the need for more rigorous formal comparisons of recommendation algorithms to further clarify their benefits in various analysis scenarios.

12.
Neuropsychopharmacology ; 47(3): 673-680, 2022 02.
Article in English | MEDLINE | ID: mdl-34608267

ABSTRACT

Thalamocortical dysrhythmia (TCD) is a model characterized by abnormal resting-state thalamic oscillatory patterns where the alpha rhythm is replaced by cross-frequency coupling of low- and high-frequency rhythms. Although disrupted thalamic function is a suggested important pathophysiological mechanism underlying schizophrenia, knowledge regarding the TCD model in schizophrenia spectrum disorder (SSD) patients and individuals at clinical high risk (CHR) for psychosis is limited. A total of 169 SSD patients, 106 individuals at CHR for psychosis, and 105 healthy controls (HCs) underwent resting-state electroencephalography recordings. We performed mean global field power (MGFP) spectral analysis between 1 and 49 Hz as well as source-level theta phase-gamma amplitude coupling (TGC) analysis and compared resting-state oscillatory patterns across groups. Correlations between altered TGC values and psychotic symptom severity in the patient group were investigated. Spectral MGFP of low- and high-frequencies was larger in the SSD and CHR groups than in the HC group. The TGC of SSD patients was greater than that of HCs in the right frontal, right parietal, and left and right limbic lobes. Greater TGC in the right frontal and limbic lobes was associated with positive symptom severity in SSD patients. However, TGC in the CHR group was comparable to that in the HCs and was smaller than that in the SSD group in widespread cortical regions. The TCD pattern may be apparent after frank psychotic disorder onset in tandem with overt positive symptoms. A psychosis-risk state without overt psychotic symptoms could be characterized by abnormally increased low- and high-frequency activities with relatively preserved TGC.


Subject(s)
Psychotic Disorders , Schizophrenia , Electroencephalography , Humans , Schizophrenia/complications , Schizophrenia/diagnostic imaging , Thalamus/diagnostic imaging
13.
World Allergy Organ J ; 15(1): 100622, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34956434

ABSTRACT

INTRODUCTION: Hong Kong has had a low incidence of COVID-19 vaccine related anaphylaxis, partly due to its Vaccine Allergy Safety (VAS) guidelines for screening those at higher risk of COVID-19 vaccine-associated allergic reactions. We characterize the initial experience of the VAS clinics, as well as the impact of unnecessary referrals to the vaccination program. METHODS: All patients attending the VAS Clinics of the public and private health services between February and June 2021 were reviewed. RESULTS: Out of 1127 patients assessed at VAS clinics, 1102 (97.8%) patients were recommended for vaccination. Out of those contacted, more than 80% (450/558) received vaccination successfully; the remaining had not yet booked their vaccinations. The majority (87.5%) of patients not recommended was due to potential excipient allergies. Males were significantly more likely to be recommended (OR = 5.822, 95% CI = 1.361-24.903, p = 0.007), but no other features were associated with recommendation for vaccination. Almost half (45.1%) of public service referrals were rejected due to insufficient information or incorrect indications for referral. The majority of cases (56.2%) of patients referred for suspected "anaphylaxis" did not fulfil diagnostic criteria. DISCUSSION: COVID-19 vaccination is very safe and 98% of high-risk patients were recommended for vaccination. Barriers to VAS include a high proportion of inappropriate referrals, inaccurate diagnoses of anaphylaxis and inability to diagnose excipient allergies. Our data validates that a prior history of COVID-vaccine unrelated anaphylaxis should be removed as a precaution for vaccination. Closer collaborations between primary care and allergy specialists and changes in pharmaceutical legislation should be made a priority to promote vaccination uptake.

14.
Zootaxa ; 5219(5): 486-492, 2022 Dec 13.
Article in English | MEDLINE | ID: mdl-37044554

ABSTRACT

One new species of Olethreutes Hübner, 1822 species, O. oculata Kim, Byun & Bae, sp. nov., is described, and two related species, O. captiosana (Falkovitsh, 1960) and O. subtilana (Falkovitsh, 1959), are redescribed from Korea. Color figures of adults and images of genitalia are provided. [Zoobank registrations: Olethreutes oculata Kim, Byun & Bae, new species: LSID: urn:lsid:zoobank.org:act:814E618C-C13D-4FAC-A669-C3AD8673227F].


Subject(s)
Lepidoptera , Moths , Animals , Genitalia
15.
Zootaxa ; 5188(3): 264-274, 2022 Sep 19.
Article in English | MEDLINE | ID: mdl-37044780

ABSTRACT

The genus Nephelobotys is newly recorded from Laos and two new species Nephelobotys denticulatus sp. nov. and Nephelobotys forcipatus sp. nov. are newly described. Nephelobotys evenoralis (Walker, 1859) comb. nov., is also newly reported from Korea. Illustrations of adults and genitalia are provided. The differences with related genus Torulisquama Zhang & Li, 2010 are briefly discussed.


Subject(s)
Lepidoptera , Animals , Genitalia , Laos , Lepidoptera/classification
16.
Zootaxa ; 5196(3): 407-419, 2022 Oct 20.
Article in English | MEDLINE | ID: mdl-37045071

ABSTRACT

The genus Patania Moore, 1888 (Lepidoptera, Crambidae) has been recorded in Korea with nine species: P. balteata (Fabricius, 1798), P. brevipennis (Inoue, 1982), P. chlorophanta (Butler, 1878), P. deficiens (Moore, 1887), P. expictalis (Christoph, 1881), P. punctimarginalis (Hampson, 1896), P. ruralis (Scopoli, 1763), P. sabinusalis (Walker, 1859) and P. harutai (Inoue, 1955). In this study, we describe a new species P. gorosoe Lee, Heo & Bae, sp. nov. which very similar with P. harutai. The host plants of above two species are clarificated. Illustrations of adults and genitalia of P. harutai and P. gorosoe sp. nov. are provided. A checklist of the genus Patania in Korea is also provided. [Zoobank registrations: Patania gorosoe Lee, Heo & Bae, new species: LSID: urn:lsid:zoobank.org:act:3FFD8DA8-8EA1-423A-84A9-BC5804E18EA0].


Subject(s)
Lepidoptera , Moths , Animals , Genitalia
17.
Zootaxa ; 5032(3): 423-430, 2021 Sep 08.
Article in English | MEDLINE | ID: mdl-34811118

ABSTRACT

The paper contains the description of two new Meganola Dyar, 1898 species (M. canaliculata Cha Bae, sp. n. and M. phuana Cha Bae, sp. n.) and a new record of M. tetrodon (de Joannis, 1928) from Laos. Color figures of adults and genitalia of the examined species are provided.


Subject(s)
Moths , Animals , Genitalia , Laos
18.
Science ; 374(6567): 629-632, 2021 Oct 29.
Article in English | MEDLINE | ID: mdl-34709900

ABSTRACT

Legume nodules create an environment for intracellular bacterial symbionts to fix atmospheric nitrogen. The master regulator NODULE INCEPTION (NIN) controls many aspects of nodule initiation, and we demonstrate that it also regulates the transition to nitrogen fixation via proteolytic processing by a signal peptidase complex. Processing of NIN results in a carboxyl-terminal NIN fragment containing the DNA binding motifs, which activates a suite of genes associated with symbiosome development and nitrogen fixation. Similar NIN processing is observed in Medicago truncatula and Lotus japonicus, implying a conserved mechanism of cell state transition. These findings explain how legume nodules transition to a nitrogen-fixing state and a mechanism by which a single transcription factor can regulate many different developmental processes necessary in the activation and regulation of nitrogen fixation.

19.
Sci Rep ; 11(1): 18402, 2021 09 15.
Article in English | MEDLINE | ID: mdl-34526587

ABSTRACT

The symptoms of obsessive-compulsive disorder (OCD) are largely related to impaired executive functioning due to frontostriatal dysfunction. To better treat OCD, the development of biomarkers to bridge the gap between the symptomatic-cognitive phenotype and brain abnormalities is warranted. Therefore, we aimed to identify biomarkers of impaired organizational strategies during visual encoding processes in OCD patients by developing an eye tracking-based Rey-Osterrieth complex figure test (RCFT). In 104 OCD patients and 114 healthy controls (HCs), eye movements were recorded during memorization of the RCFT figure, and organizational scores were evaluated. Kullback-Leibler divergence (KLD) scores were calculated to evaluate the distance between a participant's eye gaze distribution and a hypothetical uniform distribution within the RCFT figure. Narrower gaze distributions within the RCFT figure, which yielded higher KLD scores, indicated that the participant was more obsessed with detail and had less organizational strategy. The OCD patients showed lower organizational scores than the HCs. Although no group differences in KLD scores were noted, KLD scores were significantly associated with organization T scores in the OCD group. The current study findings suggest that eye tracking biomarkers of visual memory encoding provide a rapidly determined index of executive functioning, such as organizational strategies, in OCD patients.


Subject(s)
Biomarkers , Executive Function , Eye Movements , Memory , Obsessive-Compulsive Disorder/diagnosis , Obsessive-Compulsive Disorder/physiopathology , Adult , Case-Control Studies , Female , Humans , Male , Neuropsychological Tests , Obsessive-Compulsive Disorder/etiology , Symptom Assessment , Young Adult
20.
Nat Commun ; 12(1): 4194, 2021 07 07.
Article in English | MEDLINE | ID: mdl-34234144

ABSTRACT

Photomorphogenesis, light-mediated development, is an essential feature of all terrestrial plants. While chloroplast development and brassinosteroid (BR) signaling are known players in photomorphogenesis, proteins that regulate both pathways have yet to be identified. Here we report that DE-ETIOLATION IN THE DARK AND YELLOWING IN THE LIGHT (DAY), a membrane protein containing DnaJ-like domain, plays a dual-role in photomorphogenesis by stabilizing the BR receptor, BRI1, as well as a key enzyme in chlorophyll biosynthesis, POR. DAY localizes to both the endomembrane and chloroplasts via its first transmembrane domain and chloroplast transit peptide, respectively, and interacts with BRI1 and POR in their respective subcellular compartments. Using genetic analysis, we show that DAY acts independently on BR signaling and chlorophyll biogenesis. Collectively, this work uncovers DAY as a factor that simultaneously regulates BR signaling and chloroplast development, revealing a key regulator of photomorphogenesis that acts across cell compartments.


Subject(s)
Arabidopsis Proteins/metabolism , HSP40 Heat-Shock Proteins/metabolism , Membrane Proteins/metabolism , Morphogenesis/physiology , Protein Kinases/metabolism , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Brassinosteroids/metabolism , Chlorophyll/biosynthesis , Chloroplasts/metabolism , Etiolation/physiology , Gene Expression Regulation, Plant/physiology , Gene Knockdown Techniques , HSP40 Heat-Shock Proteins/genetics , HSP40 Heat-Shock Proteins/isolation & purification , Light , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Morphogenesis/radiation effects , Mutation , Plants, Genetically Modified , Protein Kinases/genetics , RNA-Seq , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Seedlings/growth & development , Signal Transduction/physiology
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