Estimating the impact of vadose zone heterogeneity on agricultural managed aquifer recharge: A combined experimental and modeling study.

Agricultural managed aquifer recharge (Ag-MAR) is a promising approach to replenish groundwater resources using flood water and cropland as spreading grounds. However, site selection, particularly the layering of sediment deposits in the subsurface, can greatly influence Ag-MAR efficacy as it controls water flow and solute transport in the vadose zone. In this study, we use the HYDRUS-1D software to simulate water flow and solute transport from the land surface to the groundwater table in three vadose zone profiles (LS, MS, HS) characterized by differing fractions of sand (44 %, 47 %, and 64 %). For each profile, the single- and dual-porosity models (i.e., considering or not nonequilibrium water flow and solute transport) were calibrated using observed surface ponding, soil water content, and KBr breakthrough data. Water flow and bromide transport in the profile with the lowest sand fraction (LS) were best captured using the model that considered both preferential flow and nonequilibrium bromide transport. Water flow and bromide transport in the profile with the highest sand fraction (HS) was best simulated with the model that considered preferential flow and equilibrium bromide transport. Uniform water flow and nonequilibrium bromide transport provided the best fit for the third profile (MS). The degree of preferential flow was highest in the profile with the largest sand fraction (HS), which also showed the largest flow velocities compared to the profiles with lower sand amounts (LS and MS). Preferential flow did not significantly impact the overall water balance (within 3 %), but caused a significant decrease in vadose zone travel times (bromide) by up to 38 %, relative to a single-porosity model fit. Recharge efficiency varied between 88 % and 90 %, while the average travel times from the soil surface to groundwater varied up to 119 % (from 3.6 to 7.9 days) between the three sites. This study demonstrates that similar recharge efficiency can be achieved at sites with differing soil texture profiles, but subsurface heterogeneity can substantially affect contaminant transport processes and their travel times.

Molecular and Dual-Isotopic Profiling of the Microbial Controls on Nitrogen Leaching in Agricultural Soils under Managed Aquifer Recharge.

Nitrate (NO3-) leaching is a serious health and ecological concern in global agroecosystems, particularly those under the application of agricultural-managed aquifer recharge (Ag-MAR); however, there is an absence of information on microbial controls affecting NO3- leaching outcomes. We combine natural dual isotopes of NO3- (15N/14N and 18O/16O) with metagenomics, quantitative polymerase chain reaction (PCR), and a threshold indicator taxa analysis (TITAN) to investigate the activities, taxon profiles, and environmental controls of soil microbiome associated with NO3- leaching at different depths from Californian vineyards under Ag-MAR application. The isotopic signatures demonstrated a significant priming effect (P < 0.01) of Ag-MAR on denitrification activities in the topsoil (0-10 cm), with a 12-25-fold increase of 15N-NO3- and 18O-NO3- after the first 24 h of flooding, followed by a sharp decrease in the enrichment of both isotopes with ∼80% decline in denitrification activities thereafter. In contrast, deeper soils (60-100 cm) showed minimal or no denitrification activities over the course of Ag-MAR application, thus resulting in 10-20-fold of residual NO3- being leached. Metagenomic profiling and laboratory microcosm demonstrated that both nitrifying and denitrifying groups, responsible for controlling NO3- leaching, decreased in abundance and potential activity rates with soil depth. TITAN suggested that Nitrosocosmicus and Bradyrhizobium, as the major nitrifier and denitrifier, had the highest and lowest tipping points with regard to the NO3- changes (P < 0.05), respectively. Overall, our study provides new insight into specific depth limitations of microbial controls on soil NO3- leaching in agroecosystems.

Nitrogen fate during agricultural managed aquifer recharge: Linking plant response, hydrologic, and geochemical processes.

Agricultural managed aquifer recharge (Ag-MAR, on-farm recharge), where farmland is flooded with excess surface water to intentionally recharge groundwater, has received increasing attention by policy makers and researchers in recent years. However, there remain concerns about the potential for Ag-MAR to exacerbate nitrate (NO3-) contamination of groundwater, and additional risks, such as greenhouse gas emissions and crop tolerance to prolonged flooding. Here, we conducted a large-scale, replicated winter groundwater recharge experiment to quantify the effect of Ag-MAR on soil N biogeochemical transformations, potential NO3- leaching to groundwater, soil physico-chemical conditions, and crop yield. The field experiment was conducted in two grapevine vineyards in the Central Valley of California, which were each flooded for 2 weeks and 4 weeks, respectively, with 1.31 and 1.32 m3 m-2 of water. Hydrologic, geochemical, and microbial results indicate that NO3- leaching from the first 1 m of the vadose zone was the dominant N loss pathway during flooding. Based on pore water sample and N2O emission data, denitrification played a lesser role in decreasing NO3- in the root zone but prolonged anoxic conditions resulted in a significant 29 % yield decrease in the 4-week flooded vineyard. The results from this research, combined with data from previous studies, are summarized in a new conceptual model for integrated water-N dynamics under Ag-MAR. The proposed model can be used to determine best Ag-MAR management practices.

eGreenhouse: Robotically positioned, low-cost, open-source CO2 analyzer and sensor device for greenhouse applications.

Advances in gas sensors and open-source hardware are enabling new options for low-cost and light-weight gas sampling devices that are also robust and easy to use and construct. Although the number of studies investigating these sensors has been increasing in the last few years, they are still scarce with respect to agricultural applications. Here, we present a complete system for high-accuracy measurements of temperature, relative humidity, luminosity, and CO2 concentrations. The sensors suite is integrated on the previously developed HyperRail device (Lopez Alcala et al., 2019) - a reliable, accurate, and affordable linear motion control system. All measurements are logged with a location and time-stamp. The system was assembled from only off-the-shelf or 3D printable products. We deployed the system in an agricultural greenhouse to demonstrate the system capabilities.

The role of atmospheric conditions in CO2 and radon emissions from an abandoned water well.

Boreholes and wells are complex boundary features at the earth-atmosphere interface, connecting the subsurface hydrosphere, lithosphere, and biosphere to the atmosphere above it. It is important to understand and quantify the air exchange rate of these features and, consequently their contribution as sources for greenhouse gas (GHG) emissions to the atmosphere. Here, we investigate the effect of atmospheric conditions, namely atmospheric pressure and temperature, on air, CO2, and radon transport across the borehole-ambient atmosphere interface and inside a 110-m deep by 1-m diameter borehole in northern Israel. Sensors to measure temperature, relative humidity, CO2, and radon were placed throughout a cased borehole. A standard meteorological station was located above the borehole. Data were logged at a high 0.5-min resolution for 9 months. Results show that climatic driving forces initiated 2 different advective air transport mechanisms. (1) Diurnal and semidiurnal atmospheric pressure cycles controlled daily air transport events (barometric pumping); and (2) There was a correlation between borehole-atmosphere temperature differences and transport on a seasonal scale (thermal-induced convection). Barometric pumping was identified as yielding higher fluxes of vadose zone gases than thermal-induced convection. Air velocities inside the borehole and CO2 emissions to the atmosphere were quantified, fluctuating from zero up to ~6 m/min and ~5 g-CO2/min, respectively. This research revealed the mechanisms involved in the process throughout the year and the potential contribution role played by boreholes to GHG emissions.