ABSTRACT
Constipation and frailty are associated with intestinal dysbiosis. This study aims to identify intestinal microbial signatures that can differentiate between constipated elders accompanied by frailty and those without frailty. We collected stool samples from 61 participants and conducted 16S rRNA gene sequencing. Constipated patients with frailty (Constipation_F) exhibited reduced gut microbial diversities compared to constipated patients without frailty (Constipation_NF) and healthy individuals (C). From differential genera, random forest models identified 14, 8, and 5 biomarkers for distinguishing Constipation_F from Constipation_NF, Constipation_F from C, and Constipation_NF from C, respectively. Functional analysis revealed that pathways (P381-PWY and PWY-5507) related to vitamin B12 synthesis were reduced in Constipation_F, which aligns with the decreased abundances of vitamin-B12-producing Actinomyces and Akkermansia in this group. Our study unveils substantial differences in gut microbiota between constipated elders with frailty and those without, underscoring the diagnostic and therapeutic potential of genera involved in vitamin B12 synthesis.
ABSTRACT
Duck circovirus (DuCV) is one of the most prevalent infectious viruses in the duck industry in China. Although the clinical signs vary, it often causes immunosuppression in the host and leads to secondary infection with other pathogens. Novel goose parvovirus (NGPV) mainly infects ducks and causes short beak and dwarfism syndrome (SBDS) in ducks. However, the incidence of infection in ducks has increased in recent years, and the phenomenon of mixed infection with DuCV is common, resulting in more severe clinical morbidity. However, there are no systematic study evaluating the presence of mixed infections. In order to investigate the synergistic pathogenicity of DuCV and NGPV co-infection in SPF ducks, a comparative experiment between DuCV and NGPV co-infection and mono-infection animal models was established. The results showed that the clinical signs of short beak, dwarfism and immunosuppression were more obvious in DuCV and NGPV co-infected ducks; the tissue damage of target organs was more serious; and the viral titer of organs and cloacal swabs were more significant compared with those of SPF ducks infected with only one virus. The results indicated that co-infection with DuCV and NGPV could promote viral replication and cause more severe tissue damage and immunosuppression than single virus infection. The present study reveals that the co-infection of NGPV and DuCV has a synergistic pathogenic effect from the aspect of pathogenicity, and the conclusions drawn not only clarify the direction of the subsequent research on the mechanism of co-infection of NGPV and DuCV, but also provide a scientific basis for the research on the co-infection of immunosuppressive diseases and other diseases.
ABSTRACT
Bioretention systems prove effective in purifying common persistent organic pollutants (POPs) found in urban rainfall runoff. However, the response process of the microecosystem in the media becomes unclear when POPs accumulate in bioretention systems. In this study, we constructed bioretention systems and conducted simulated rainfall tests to elucidate the evolution of micro-ecosystems within the media under typical POPs pollution. The results showed all POPs in runoff were effectively removed by surface adsorption in different media, with load reduction rates of >85 % for PCBs and OCPs and > 80 % for PAHs. Bioretention soil media (BSM) + water treatment residuals (WTR) media exhibited greater stability in response to POPs contamination compared to BSM and pure soil (PS) media. POPs contamination significantly impacted the microecology of the media, reducing the number of microbial species by >52.6 % and reducing diversity by >27.6 % at the peak of their accumulation. Enzyme activities were significantly inhibited, with reductions ranging from 44.42 % to 60.33 %. Meanwhile, in terms of ecological functions, the metabolism of exogenous carbon sources significantly increased (p < 0.05), while nitrogen and sulfur cycling processes were suppressed. Microbial diversity and enzyme activities showed some recovery during the dissipation of POPs but did not reach the level observed before the experiment. Dominant bacterial species and abundance changed significantly during the experiment. Proteobacteria were suppressed, but remained the dominant phylum (all relative abundances >41 %). Bacteroidota, Firmicutes, and Actinobacteria adapted well to the contamination. Pseudomonas, a typical POPs-degrading bacterium, displayed a positive correlation between its relative abundance and POPs levels (mean > 10 %). Additionally, POPs and media properties, including TN and pH, are crucial factors that collectively shape the microbial community. This study provides new insights into the impacts of POPs contamination on the microbial community of the media, which can improve media design and operation efficiency.
Subject(s)
Biodegradation, Environmental , Persistent Organic Pollutants , Water Pollutants, Chemical , Water Pollutants, Chemical/analysis , Ecosystem , Polycyclic Aromatic Hydrocarbons/analysis , RainABSTRACT
A photorechargeable supercapacitor was constructed using vanadium pentoxide (V2O5), reduced graphene oxide hydrogel (rGH), and zinc trifluoromethanesulfonate (Zn(CF3SO3)2) as the photoanode, cathode, and electrolyte, respectively. The phase composition, microstructure, chemical structure, light absorption, and specific surface area of the synthesized products and the electrochemical performance of the rGH/V2O5 supercapacitor were investigated using X-ray diffraction (XRD), scanning electron microscopy (SEM), Fourier-transform infrared spectroscopy (FT-IR), Raman spectroscopy, UV-Vis spectroscopy, the Brunauer-Emmett-Teller (BET) method, and an electrochemical workstation, respectively. The results show that the device has a specific capacity of 164 F g-1 at 0.5 A g-1 under illumination with 95 mW cm-2 light intensity, which is 20.5% higher than that under normal electrical charging. The supercapacitor has a 75% capacity retention rate and 100% coulombic efficiency, respectively, after 10 000 testing cycles under photoelectric synergistic charging and discharging. The as-constructed rGH/V2O5 photorechargeable supercapacitor exhibits promising application potential in electric vehicles and wearable electronics.
ABSTRACT
Bioretention facilities have proven highly effective in removing pollutants from runoff. However, there is a concerning paucity of research on the contamination characteristics and associated risks posed by refractory pollutants in these facilities following long-term operation. This research focuses on the distribution, sources, microbial community impact, and human health risks of pollutants in eight bioretention facilities that have been operational for 5-11 years. The results showed that the distribution of Cu, Zn, and Cd was closely related to anti-seepage measures. PAHs, PCBs, and OCPs primarily accumulated in the surface, with concentrations ranging from 7.42 to 20.34 mg/kg, 31.8-77.3 µg/kg, and 60.5-163.6 µg/kg, respectively. Their concentrations inversely correlate with the depth of the media. Although the majority of contaminants remained below their respective risk thresholds, their concentrations typically exceeded those of background soil values, indicating an enrichment phenomenon. Source analysis revealed that PAHs primarily originate from oil combustion, PCBs were linked to their related industrial products, DDTs had their main sources in technical DDx and residues from the use of dicofol, while HCHs were traced back to historical residues from agricultural activities. Microbial α-diversity (Chao 1 and Shannon) decreased by 8.3-23.4% and 0.8-4.4%, respectively, in different facilities after long-term operation. The most dominant microbial phylum in the facilities was Proteobacteria (all relative abundances >48%). The total relative abundance of dominant genera was 6.7-34.3% higher than the control site, and Pseudomonas, a typical POPs-heavy metal degrading bacterium, had the highest relative abundance (>1.2%). Cu, Zn, and Cd present no non-carcinogenic risks and have low potential ecological risks. However, the lifetime cancer risk for PAHs is 10-6 â¼10-4 in most facilities and is of concern. The cancer risk for PCBs is acceptable, while OCPs pose a low cancer risk only for children.
Subject(s)
Metals, Heavy , Persistent Organic Pollutants , Risk Assessment , Metals, Heavy/analysis , Humans , Environmental Monitoring , Soil Pollutants/analysis , MicrobiotaABSTRACT
Climate change and urbanization contribute to the increased frequency of short-duration intense rainstorms. Traditional solutions often involve multiple scenarios for cost-effectiveness comparison, neglecting the rationality of placement conditions. The effective coupling and coordination of the location, number, size, and cost of storage tanks are crucial to addressing this issue. A three-phase approach is proposed to enhance the dynamic link between drainage pipeline and storage tanks in urban high-density built-up areas, integrating Python language, SWMM, the Elitist Non-Dominated Sorting Genetic Algorithm (NSGA-III), and the Analytic Hierarchy Process (AHP) methods. In the first stage, each node within the pipeline network is considered as a potential storage tank location. In the second stage, factors such as the length and diameter of the upstream connecting pipeline, as well as the suitability of the storage tank location, are assessed. In the third stage, the length and diameter of the downstream connecting pipeline node are evaluated. The results show that the 90 overflow nodes (overflow time >0.5h) have been cleared using the three-phase approach with a 50a (duration = 3h) return period as the rainfall scenario, which meets the flooding limitations. After the completion of the three-phase method configuration, the total overflow and SS loads were reduced by 96.45% and 49.30%, respectively, compared to the status quo conditions. These two indicators have decreased by 48.16 and 9.05%, respectively, compared to the first phase (the traditional method of only replacing all overflow nodes with storage tanks). The proposed framework enables decision-makers to evaluate the acceptability and reliability of the optimal management plan, taking into account their preferences and uncertainties.
Subject(s)
Floods , Rain , Reproducibility of Results , Computer Simulation , UrbanizationABSTRACT
Deep-sea hydrothermal vents have been extensively explored around the globe in the past decades, and the diversity of microbial communities and their ecological functions related to hydrothermal vents have become hotspots in the study of microbial biogeochemistry. However, knowledge of dominant microbial communities and their unique metabolic characteristics adapting to hydrothermal vents is still limited. In our study, the sediment sample near the Tangyin hydrothermal vent in the southern part of the Okinawa Trough was collected, and the most abundant phyla are Proteobacteria and Desulfobacterota based on the 16S rRNA genes and metagenome sequencing. Metagenomic analysis revealed that methane metabolism, sulfur reduction, and Fe2+ uptake were abundantly distributed in hydrothermal sediment. In addition, most of the metagenomic assembly genomes (MAGs), belonging to Chloroflexota, Desulfobacterota, and Gammaproteobacteria, were found to be involved in methanogenesis, sulfur oxidation/reduction, and ferrous/ferric iron metabolisms. Among these MAGs, the two representative groups (Bathyarchaeia and Thioglobaceae) also showed distinct metabolic characteristics related to carbon, sulfur, and iron to adapt to hydrothermal environments. Our results reveal the dominant microbial populations and their metabolic features in the sediment near the Tangyin hydrothermal fields, providing a better understanding of microbial survival strategies in the extreme environment.
ABSTRACT
Supercapacitors (SCs) are a novel type of energy storage device that exhibit features such as a short charging time, a long service life, excellent temperature characteristics, energy saving, and environmental protection. The capacitance of SCs depends on the electrode materials. Currently, carbon-based materials, transition metal oxides/hydroxides, and conductive polymers are widely used as electrode materials. However, the low specific capacitance of carbon-based materials, high cost of transition metal oxides/hydroxides, and poor cycling performance of conductive polymers as electrodes limit their applications. Copper-sulfur compounds used as electrode materials exhibit excellent electrical conductivity, a wide voltage range, high specific capacitance, diverse structures, and abundant copper reserves, and have been widely studied in catalysis, sensors, supercapacitors, solar cells, and other fields. This review summarizes the application of copper-sulfur compounds in SCs, details the research directions and development strategies of copper-sulfur compounds in SCs, and analyses and summarizes the research hotspots and outlook, so as to provide a reference and guidance for the use of copper-sulfur compounds.
Subject(s)
Scoliosis , Adolescent , Humans , Muscle, Skeletal , NLR Family, Pyrin Domain-Containing 3 Protein , RNA, MessengerABSTRACT
Facing to a planar tracking problem, a multiple-interpretable improved Proximal Policy Optimization (PPO) algorithm with few-shot technique is proposed, namely F-GBQ-PPO. Compared with the normal PPO, the main improvements of F-GBQ-PPO are to increase the interpretability, and reduce the consumption for real interaction samples. Considering to increase incomprehensibility of a tracking policy, three levels of interpretabilities has been studied, including the perceptual, logical and mathematical interpretabilities. Detailly speaking, it is realized through introducing a guided policy based on Apollonius circle, a hybrid exploration policy based on biological motions, and the update of external parameters based on quantum genetic algorithm. Besides, to deal with the potential lack of real interaction samples in real applications, a few-shot technique is contained in the algorithm, which mainly generate fake samples through a multi-dimension Gaussian process. By mixing fake samples with real ones in a certain proportion, the demand for real samples can be reduced.
ABSTRACT
The rapid development of the city leads to the continuous updating of the land use allocation ratio, particularly during the flood season, which will exacerbate the significant changes in the spatial and temporal patterns of urban flooding, increasing the difficulty of urban flood forecasting and early warning. In this study, the spatial and temporal evolution of flooding in a high-density urban area was analyzed based on the Mike Flood model, and the influence mechanisms of different rainfall peak locations and infiltration rate scenarios on the spatial and temporal characteristics of urban waterlogging were explored. The results revealed that under the same return period, the larger the rainfall peak coefficient, the larger the peak value of inundation volume and inundation area. When the rainfall peak coefficient is small, the higher the return period is, and the larger the peak lag time of the inundation volume is, in which P = 50a, r = 0.2, the peak lag time of the inundation volume reached 32 min and 45 min for the inundation depths H > 0.03 m and H > 0.15 m, respectively. There are also significant differences in the peak lag time of waterlogging inundation volume for different inundation depths. The greater the inundation depth, the longer the peak lag time of the inundation volume, and the higher the return period, the more significant the effect of lag time prolongation. It is worth noting that the increase in infiltration rate may lead to an advance in the peak time of inundation volume and inundation area, and the peak time of the inundation area is overall more obvious than that of inundation volume. The effect of infiltration rate on the peak time of inundation volume for larger inundation depths was relatively large; the peak times of inundation volume and inundation area were advanced by 4-6 min and 4-8 min for H > 0.03 m and H > 0.15 m, respectively, after the increase in infiltration rate, and the higher the rainfall return period, the longer the advance time. The spatial and temporal characteristics of waterlogging under different peak rainfall locations and infiltration capacities obtained in this study can help provide a new perspective for temporal forecasting and warning of urban waterlogging.
Subject(s)
Floods , CitiesABSTRACT
Rain gardens play a key role in urban non-point source pollution control. The drainage type affects the infiltration processes of runoff pollutants. The soil properties and microbial community structures were studied to reveal the stability of the ecosystem in rain gardens with different drainage types under long-term operation. The results showed that the soil water content and total organic carbon in the drained rain gardens were always higher than that of the infiltrated ones. With the increase in running time, the contents of heavy metals in rain gardens showed significant accumulation phenomena, especially the contents of Zn and Pb in drained rain gardens were higher than that in infiltrated ones. The accumulation of pollutants resulted in lower microbial diversity in drained rain gardens than in infiltrated rain gardens, but the microbial community structures were the same in all rain gardens. The effects of drainage type on microbial community evolution were not significant, only the accumulation of heavy metals led to changes in the abundance of dominant microorganisms. There were differences in the soil environment of rain gardens with different drainage types. The long-term operation of rain gardens led to fluctuations in the soil ecosystem, while the internal micro-ecosystems of the drained rain gardens were in unstable states.
Subject(s)
Environmental Pollutants , Metals, Heavy , Microbiota , Environmental Monitoring , Gardens , Rain , Soil/chemistryABSTRACT
Acute respiratory distress syndrome (ARDS) is a life-threatening lung condition characterized by widespread inflammation and pulmonary edema. Adrenomedullin (AM), a bioactive peptide with various functions, is expected to be applied in treating ARDS. Its functions are regulated primarily by two receptor activity-modifying proteins, RAMP2 and RAMP3, which bind to the AM receptor calcitonin receptor-like receptor (CLR). However, the roles of RAMP2 and RAMP3 in ARDS remain unclear. We generated a mouse model of ARDS via intratracheal administration of lipopolysaccharide (LPS), and analyzed the pathophysiological significance of RAMP2 and RAMP3. RAMP2 expression declined with LPS administration, whereas RAMP3 expression increased at low doses and decreased at high doses of LPS. After LPS administration, drug-inducible vascular endothelial cell-specific RAMP2 knockout mice (DI-E-RAMP2-/-) showed reduced survival, increased lung weight, and had more apoptotic cells in the lungs. DI-E-RAMP2-/- mice exhibited reduced expression of Epac1 (which regulates vascular endothelial cell barrier function), while RAMP3 was upregulated in compensation. In contrast, after LPS administration, RAMP3-/- mice showed no significant changes in survival, lung weight, or lung pathology, although they exhibited significant downregulation of iNOS, TNF-α, and NLRP3 during the later stages of inflammation. Based on transcriptomic analysis, RAMP2 contributed more to the circulation-regulating effects of AM, whereas RAMP3 contributed more to its inflammation-regulating effects. These findings indicate that, while both RAMP2 and RAMP3 participate in ARDS pathogenesis, their functions differ distinctly. Further elucidation of the pathophysiological significance and functional differences between RAMP2 and RAMP3 is critical for the future therapeutic application of AM in ARDS.
Subject(s)
Adrenomedullin , Respiratory Distress Syndrome , Animals , Mice , Adrenomedullin/genetics , Adrenomedullin/metabolism , Inflammation , Lipopolysaccharides , Receptor Activity-Modifying Protein 2/genetics , Receptor Activity-Modifying Protein 2/metabolism , Receptor Activity-Modifying Protein 3/genetics , Receptor Activity-Modifying Protein 3/metabolism , Receptor Activity-Modifying Proteins/genetics , Receptors, Adrenomedullin/genetics , Receptors, Adrenomedullin/metabolism , Respiratory Distress Syndrome/geneticsABSTRACT
Purpose: Colorectal cancer (CRC) is the 3rd most prevalent malignant tumour globally. Although significant strides have been made in diagnosis and treatment, its prognosis at the moment remains unpromising. Therefore, there is an urgent and desperate need to identify novel biomarkers of CRC and evaluate its mechanism of tumourigenesis and development. Methods: JASPAR and RNAinter databases are used to analyze target genes associated with colorectal cancer. Western blotting, q-PCR and immunohistochemistry et, al. were used to detect the level of MNX1 in patients with colorectal cancer, and Chip-PCR was used to detect the targeted binding ability of E2F4 and MNX1. The cells and animal models overexpressed MNX1 and E2F4 were constructed by shRNA transfection. Results: Herein, MNX1 was highly expressed and linked to favourable overall survival curves in colorectal cancer. The functional assay revealed that MNX1 overexpression could promote proliferation, migration, and invasion of CRC cells. Based on the prediction of the JASPAR and RNAinter databases, the transcription factor, E2F4, was bound to the MNX1 promoter region. The Chromatin Immunoprecipitation (ChIP) assay verified the interactions between MNX1 and E2F4 in CRC. Additionally, we found that sh-E2F4 markedly downregulated the MNX1 levels and reduced CRC progression in vivo and in vitro, which reversed MNX1 overexpression. Conclusion: Therefore, our research discovered that E2F4-mediated abnormal MNX1 expression promotes CRC progression and could become a novel diagnostic or therapeutic target of CRC.
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Adolescent idiopathic scoliosis (AIS) is a complex disease characterized by three-dimensional structural deformities of the spine. Its pathogenesis is associated with osteopenia. Bone-marrow-derived mesenchymal stem cells (BMSCs) play an important role in bone metabolism. We detected 1919 differentially expressed mRNAs and 744 differentially expressed lncRNAs in BMSCs from seven patients with AIS and five patients without AIS via high-throughput sequencing. Multiple analyses identified bone morphogenetic protein-6 (BMP6) as a hub gene that regulates the abnormal osteogenic differentiation of BMSCs in AIS. BMP6 expression was found to be decreased in AIS and its knockdown in human BMSCs significantly altered the degree of osteogenic differentiation. Additionally, CAP1-217 has been shown to be a potential upstream regulatory molecule of BMP6. We showed that CAP1-217 knockdown downregulated the expression of BMP6 and the osteogenic differentiation of BMSCs. Simultaneously, knockout of BMP6 in zebrafish embryos significantly increased the deformity rate. The findings of this study suggest that BMP6 is a key gene that regulates the abnormal osteogenic differentiation of BMSCs in AIS via the CAP1-217/BMP6/RUNX2 axis.
Subject(s)
Bone Diseases, Metabolic , Scoliosis , Humans , Adolescent , Animals , Scoliosis/genetics , Scoliosis/pathology , Osteogenesis/genetics , Zebrafish/genetics , Spine/metabolism , Cell Differentiation/genetics , Bone Diseases, Metabolic/genetics , Bone Diseases, Metabolic/metabolism , Cells, Cultured , Bone Marrow Cells/metabolism , Bone Morphogenetic Protein 6/geneticsABSTRACT
Climate change is altering urban rainfall characteristics, leading to extreme urban stormwater and, particularly, more frequent flooding. Due to the uncertainty of climate change, the responses of urban drainage systems to climate change are becoming more complicated. This complexity makes it difficult for decision makers to assess whether urban infrastructure is sufficiently resilient to cope with flood risks. In this study, the Xiao Zhai area, a high-density urban area of China, was used as an example. A quantitative method for assessing these risks and the resilience of urban drainage systems to future urban stormwater was developed. First, based on the Coupled Model Intercomparison Project Phase 6 (CMIP6), the variation and uncertainty of future rainfall in the study area were analysed. A high-fidelity hydro-hydraulic model was developed to analyse the influence of climate change on future urban stormwater. Finally, the relationship between urban flood risk and the resilience of urban drainage systems was evaluated. The results show that the temporal distribution of future rainfall from 2023 to 2100 is relatively uniform. However, the number of heavy rainfall events increases significantly during this period. The flood risk caused by future rainfall was one level higher than the historical flood risk. For example, the flood risk caused by future 5a rainfall is equal to the flood risk from historical 10a rainfall. The correlations between the spatial distributions of flood risk and resilience are 0.49-0.63. Urban drainage systems urgently need to be improved and refined in areas with flood risk and low resilience to become more resilient to climate change. Rational planning of grey-green rainwater facilities in flood risk and low resilience areas can improve the rainwater system's resilience to 0.67-0.95 for climate change.
Subject(s)
Climate Change , Floods , Uncertainty , Forecasting , China , CitiesABSTRACT
Perovskite solar cells (PSCs) were first proposed in 2009. They have the advantages of low cost, a simple manufacturing process and excellent photoelectric performance. PSC electrodes are mainly made from precious metals such as gold and silver. Still, the cost of precious metals is high and they react with the other components of the PSCs, resulting in the poor stability of the photovoltaic device. Using carbon as an electrode material can both reduce the cost and significantly improve the stability of the photovoltaic device. However, the poor interface contact between the carbon electrode and perovskite and carbon electrode resistance results in poor photovoltaic device photoelectric performance. Finding a way to successfully utilize carbon as an alternative electrode material is a key step toward moving PSCs from the laboratory to industrialization. This paper reviews the application of carbon black, graphite, graphene, carbon nanotubes (CNTs) and composite carbon electrode in PSCs, focusing on progress in the research of doping, structure, interface modification and the production process.
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Bioretention facilities are one of the most widely used measures for urban stormwater control and utilization. In this study, the accumulation characteristics of polycyclic aromatic hydrocarbons (PAHs) in bioretention facilities and the effects of PAHs on the structure of microbial communities were explored by combining on-site monitoring and water distribution simulation experiments. The correlation between pollutant accumulation and dominant microorganisms in the bioretention systems was also clarified. The results showed that all 16 priority PAHs were detected in the bioretention facilities in the sponge city pilot area. The PAH concentrations in the soil during the non-rainy season were higher than those in the rainy season and medium- and high-ring PAHs dominated. PAHs in the study area were mainly derived from coal and biomass combustion. The potential carcinogenic risk of PAHs accumulated in the bioretention facilities in the study area was low. The microbial diversity during the non-rainy season was greater than that during the rainy season. Firmicutes, Bacteroidetes, Bacteroides, and Massilia were strongly correlated with naphthalene (NAP), pyrene (PYR), fluoranthene (FLT), and benzo[a]pyrene (BaP). According to the results of the small-scale water distribution test, the addition of PAHs had little effect on the decline in water quantity, and there was no significant regularity in the reduction of water quality including TP, NH4+-N, NO3-N, and TN. The addition of PAHs had a significant effect on the microbial community structure and an inhibitory effect on enzyme activity.
Subject(s)
Environmental Pollutants , Microbiota , Polycyclic Aromatic Hydrocarbons , Polycyclic Aromatic Hydrocarbons/analysis , Carcinogens/analysis , Soil/chemistry , Environmental Monitoring , China , Risk AssessmentABSTRACT
Dimethylsulfoniopropionate (DMSP) and related organic sulfur compounds play key roles in global sulfur cycling. Bacteria have been found to be important DMSP producers in seawater and surface sediments of the aphotic Mariana Trench (MT). However, detailed bacterial DMSP cycling in the Mariana Trench subseafloor remains largely unknown. Here, the bacterial DMSP-cycling potential in a Mariana Trench sediment core (7.5 m in length) obtained at a 10,816-m water depth was investigated using culture-dependent and -independent methods. The DMSP content fluctuated along the sediment depth and reached the highest concentration at 15 to 18 cm below the seafloor (cmbsf). dsyB was the dominant known DMSP synthetic gene, existing in 0.36 to 1.19% of the bacteria, and was identified in the metagenome-assembled genomes (MAGs) of previously unknown bacterial DMSP synthetic groups such as Acidimicrobiia, Phycisphaerae, and Hydrogenedentia. dddP, dmdA, and dddX were the major DMSP catabolic genes. The DMSP catabolic activities of DddP and DddX retrieved from Anaerolineales MAGs were confirmed by heterologous expression, indicating that such anaerobic bacteria might participate in DMSP catabolism. Moreover, genes involved in methanethiol (MeSH) production from methylmercaptopropionate (MMPA) and dimethyl sulfide (DMS), MeSH oxidation, and DMS production were highly abundant, suggesting active conversions between different organic sulfur compounds. Finally, most culturable DMSP synthetic and catabolic isolates possessed no known DMSP synthetic and catabolic genes, and actinomycetes could be important groups involved in both DMSP synthesis and catabolism in Mariana Trench sediment. This study extends the current understanding of DMSP cycling in Mariana Trench sediment and highlights the need to uncover novel DMSP metabolic genes/pathways in extreme environments. IMPORTANCE Dimethylsulfoniopropionate (DMSP) is an abundant organosulfur molecule in the ocean and is the precursor for the climate-active volatile gas dimethyl sulfide. Previous studies focused mainly on bacterial DMSP cycling in seawater, coastal sediment, and surface trench sediment samples, but DMSP metabolism in the Mariana Trench (MT) subseafloor sediments remains unknown. Here, we describe the DMSP content and metabolic bacterial groups in the subseafloor of the MT sediment. We found that the tendency for vertical variation of the DMSP content in the MT was distinct from that of the continent shelf sediment. Although dsyB and dddP were the dominant DMSP synthetic and catabolic genes in the MT sediment, respectively, both metagenomic and culture methods revealed multiple previously unknown DMSP metabolic bacterial groups, especially anaerobic bacteria and actinomycetes. The active conversion of DMSP, DMS, and methanethiol may also occur in the MT sediments. These results provide novel insights for understanding DMSP cycling in the MT.
Subject(s)
Seawater , Sulfonium Compounds , Seawater/microbiology , Bacteria , Sulfides/metabolism , Sulfonium Compounds/metabolismABSTRACT
There is a lack of simple and effective methods to quantify the fate processes of persistent organic pollutants (POPs) in bioretention systems. In this study, the fate and elimination processes of three typical 13C-labeled POPs in regularly added bioretention columns were quantified using stable carbon isotope analysis techniques. The results showed that the modified media bioretention column removed more than 90% of Pyrene, PCB169 and p,p'-DDT. Media adsorption was the dominant removal mechanism for the reduction of the three exogenous organic compounds (59.1-71.8% of the input) although plant uptake (5.9-18.0%) was also important. Mineralization was effective in degrading pyrene (13.1%) but had a very limited effect on p,p'-DDT and PCB169 removal (<2.0%), the reason for which may be related to the aerobic conditions of the filter column. Volatilization was relatively weak and negligible (<1.5%). The presence of heavy metals inhibited the removal of POPs to some extent: media adsorption, mineralization and plant uptake were reduced by 4.3-6.4%, 1.8-8.3% and 1.5-3.6% respectively. This study suggests that bioretention systems are an effective measure for the sustainable removal of POPs from stormwater and that heavy metals can inhibit the overall performance of the system. Stable carbon isotope analysis techniques can help to investigate the migration and transformation of POPs in bioretention systems.