Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 64
Filter
1.
Foods ; 13(9)2024 May 05.
Article in English | MEDLINE | ID: mdl-38731788

ABSTRACT

Cardiovascular disease (CVD) represents a substantial global health challenge, with its impact on mortality and morbidity rates surpassing that of cancer. The present study was designed to explore the cardioprotective properties of anthocyanin (ACN), a compound derived from black barley, against oxidative stress-induced damage in myocardial cells and to uncover the molecular mechanisms at play. Utilizing both in vitro and in vivo experimental models, our findings indicate that ACN notably reduced cell damage caused by oxidative stress and effectively prevented apoptosis. High-throughput RNA sequencing analysis has shed light on the mechanism by which ACN achieves its antioxidative stress effects, implicating the PTEN-Akt signaling pathway. ACN was found to modulate PTEN expression levels, which in turn influences the Akt pathway, leading to a reduction in apoptotic processes. This novel insight lays the groundwork for the potential clinical utilization of ACN in the management of CVD. While this study has shed light on some of the functions of ACN, it is important to recognize that natural compounds often interact with multiple molecular targets and engage in intricate signaling cascades. Future research endeavors will concentrate on further elucidating the regulatory mechanisms by which ACN influences PTEN expression, with the goal of enhancing our comprehension and expanding the therapeutic potential of ACN in the treatment of cardiovascular conditions.

2.
Rev Sci Instrum ; 95(4)2024 Apr 01.
Article in English | MEDLINE | ID: mdl-38602460

ABSTRACT

The characteristic frequency of a rub-impact fault is usually very complex and may contain higher harmonics and subharmonics. Due to the uncertainty of harmonic components and the complexity of signal-to-noise ratio (SNR) operation, the general scale transformation stochastic resonance (GSTSR) has certain limitations in the identification of rub-impact faults. To solve this problem, the paper starts with complexity and proposes a rub-impact fault identification method combining a swarm intelligence optimized algorithm (SIOA) with Hjorth parameters and GSTSR. The complexity of vibration signals will change greatly before and after rub-impact faults. The complexity parameter in Hjorth parameters can effectively embody the complexity of signals and is invulnerable to noise interference. Therefore, the complexity parameter in the Hjorth parameters is taken as the objective function of SIOA and combined with GSTSR. Vibration signals from cases are taken as input to adaptive stochastic resonant (ASR) systems, and the system parameters are adaptively and synchronously adjusted to realize the maximal resonant effect. Finally, the spectrum analysis of signals obtained from ASR is used to extract failure features and recognize faults in the rotor-stator rub-impact. The proposed method is verified by comparing it with other schemes under different SIOAs and different operating conditions. The result of the comparison shows that the complexity parameter of the Hjorth parameters can be taken as the objective function of SIOA to accurately identify the rub-impact fault. Meanwhile, the proposed method, compared with the method of taking SNR as an objective function, has a better effect on reducing time costs and strengthening fault characteristics.

3.
Plants (Basel) ; 13(8)2024 Apr 12.
Article in English | MEDLINE | ID: mdl-38674491

ABSTRACT

Phytolacca americana, introduced to China in the 20th century for its medicinal properties, has posed a significant ecological and agricultural challenge. Its prolific fruit production, high reproductive coefficient, adaptability, and toxic roots and fruits have led to the formation of monoculture communities, reducing native species diversity and posing threats to agriculture, human and animal health, and local ecosystems. Understanding its potential distribution patterns at a regional scale and its response to climate change is essential for effective monitoring, management, and control. In this study, we utilized the Maxent model to simulate potential habitat areas of P. americana across three timeframes (current, 2050s, and 2070s) under three climate change scenarios (SSP126, SSP245, and SSP585). Leveraging data from 556 P. americana sites across China, we employed ROC curves to assess the prediction accuracy. Our findings highlight key environmental factors influencing P. americana's geographical distribution, including the driest month's precipitation, the coldest month's minimum temperature, the wettest month's precipitation, isothermality, and temperature annual range. Under current climate conditions, P. americana potentially inhabits 280.26 × 104 km2 in China, with a concentration in 27 provinces and cities within the Yangtze River basin and its southern regions. While future climate change scenarios do not drastically alter the total suitable area, the proportions of high and low-suitability areas decrease over time, shifting towards moderate suitability. Specifically, in the SSP126 scenario, the centroid of the predicted suitable area shifts northeastward and then southwestward. In contrast, in the SSP245 and SSP585 scenarios, the centroid shifts northward.

4.
Int J Pharm ; 649: 123665, 2024 Jan 05.
Article in English | MEDLINE | ID: mdl-38048889

ABSTRACT

Recently, cylindrical granules have been applied in pharmaceutical fields and their aspect ratio (AR) is considered an important factor in the manufacturing process. However, the relationships between AR and the tableting process were seldom reported. This study aims to clarify the role of AR in the tableting process of cylindrical granules. First, mesalazine cylindrical granules with different AR were extruded, and their physical attributes were then comprehensively characterized. Subsequently, their compression behaviors and tableting performances were systematically assessed. Notably, it was found that the cylindrical granules with high AR possessed good anti-deformation capacity and favorable tabletability. Finally, the dissolution test suggested that tablets compressed from cylindrical granules with higher AR showed lower dissolution rates. Collectively, findings in this study identified that the AR of cylindrical granules was a critical factor in the tableting process and provided valuable guidance for the application of these granules in oral solid formulations.


Subject(s)
Mesalamine , Drug Compounding/methods , Tablets , Particle Size , Tensile Strength
5.
Ying Yong Sheng Tai Xue Bao ; 34(10): 2757-2766, 2023 Oct.
Article in Chinese | MEDLINE | ID: mdl-37897283

ABSTRACT

Rational delineation of ecological functional areas and clarification of their driving factors are of significance for maintaining regional ecosystem stability. We assessed six ecosystem services of Sihu Lake Basin located in Jianghan Plain using InVEST and RUSLE models and recreational scoring methods. By using K-means clustering, we identified the ecosystem service bundles, and delineated the ecological functional areas in combination with ecological sensitivity and ecosystem service bundles. The dominant driving factors of different ecological functional areas were analyzed by Geodetector. The results showed that the spatial distributions of habitat quality and carbon sequestration services were similar, with high values being mainly concentrated in Changhu Lake Basin and Honghu Lake Basin. However, the spatial distributions of crop production and soil conservation services were different, with high-value areas concentrated in the northwest area with mountains. The high values of water production service were mainly concentrated in the eastern part of Honghu Lake Basin, while the high-value areas of ecological recreation service were mainly concentrated in the northwest area and the southern part of Honghu Lake Basin. The Sihu Lake Basin could be classified into crop production bundle, habitat quality bundle, and urban living bundle according to cluster analysis. The low ecological sensitivity areas accounted for 59.0% of the Sihu Lake Basin. We classified the study area into ecological restoration areas, ecological conservation areas, ecological transition areas, ecological development areas, and comprehensive use areas by combination of ecological sensitivity and ecosystem service bundles. The geodetector results indicated that the driving factors of each ecological function zone were significantly different. The natural factors significantly influenced the ecological restoration zone, while the normalized vegetation index and population density were the main influencing factors in the ecological conservation zone and the ecological development zone, respectively. Land use type was the main influencing factor in the ecological transition zone and the comprehensive use zone. The results could provide important support for coordinated regional social development and environmental protection.


Subject(s)
Ecosystem , Lakes , China , Soil , Conservation of Natural Resources
6.
Int J Pharm ; 643: 123208, 2023 Aug 25.
Article in English | MEDLINE | ID: mdl-37419433

ABSTRACT

Cylindrical granules have been employed in the pharmaceutical industry. However, to our knowledge, the study on the compressibility and tabletability of cylindrical granules has not been reported. This study aimed to explore the effects of the physical properties of cylindrical granules on the compression behaviors and the tableting performances, with mesalazine (MSZ) as a model drug. First, the six formulations of MSZ cylindrical granules were extruded by changing the ethanol proportion in the binder. Then, the physical characteristics of MSZ cylindrical granules were systematically studied. Subsequently, the compressibility and tabletability were evaluated using different mathematic models. It was worth noting that highly porous cylindrical granules possessed favorable compressibility and good tabletability due to the increased pore volume, reduced density, and decreased fracture forces. Finally, dissolution tests were conducted and highly porous granules showed higher dissolution rates than the less porous ones, but an opposite trend was observed for the corresponding tablets. This study proved the importance of physical properties in the tableting process of cylindrical granules and provided strategies to improve their compressibility and tabletability.


Subject(s)
Excipients , Mesalamine , Drug Compounding , Drug Industry , Tablets , Particle Size , Tensile Strength
7.
Food Chem ; 417: 135890, 2023 Aug 15.
Article in English | MEDLINE | ID: mdl-36933431

ABSTRACT

Hyaluronic acid (HA), a polymer mainly found in animal tissues, plays an important role in food research. In this study, it was used for delivery improvement of naringenin (NAR) by loading it into zein nanoparticles using an anti-solvent precipitation method. The optimal Nar/zein-HA nanoparticles were uniformly spherical with particle sizes of 209.2 ± 1.9 nm, polydispersity indexes of 0.146 ± 0.032 and zeta-potentials of -19.0 ± 0.7 mV. Moreover, the microstructure of Nar/zein-HA nanoparticles was maintained primarily by hydrophobic, electrostatic, and hydrogen-bonding interactions. Furthermore, Nar/zein-HA nanoparticles showed favorable physical stability and enhanced encapsulation efficiency. Additionally, the antioxidant capacity and release in simulated gastrointestinal digestion of Nar were significantly improved. Overall, these findings indicate that the delivery efficiency of Nar was improved by formulation of ternary nanoparticles.


Subject(s)
Flavanones , Nanoparticles , Zein , Zein/chemistry , Hyaluronic Acid/chemistry , Nanoparticles/chemistry , Particle Size
8.
Pharmaceutics ; 15(1)2023 Jan 08.
Article in English | MEDLINE | ID: mdl-36678848

ABSTRACT

Amorphization is widely used as an effective method of increasing the solubility of insoluble drugs. However, some amorphous drugs exhibit a much lower dissolution rate than their corresponding crystalline form due to their gelation. In this study, we reported the gels formed from amorphous acemetacin (ACM) for the first time. Gelation was promoted at conditions of lower pH, higher temperature and lower ionic strength. Solid-state characterizations suggested that ACM gels may be formed by recrystallization. This mechanism provides a new direction in facilitating the elimination of gelation for amorphous drugs. Moreover, it also provides the basis for the development of sustained-release formulations using the gelation properties.

9.
Nucleic Acids Res ; 51(D1): D994-D1002, 2023 01 06.
Article in English | MEDLINE | ID: mdl-36318261

ABSTRACT

Homology is fundamental to infer genes' evolutionary processes and relationships with shared ancestry. Existing homolog gene resources vary in terms of inferring methods, homologous relationship and identifiers, posing inevitable difficulties for choosing and mapping homology results from one to another. Here, we present HGD (Homologous Gene Database, https://ngdc.cncb.ac.cn/hgd), a comprehensive homologs resource integrating multi-species, multi-resources and multi-omics, as a complement to existing resources providing public and one-stop data service. Currently, HGD houses a total of 112 383 644 homologous pairs for 37 species, including 19 animals, 16 plants and 2 microorganisms. Meanwhile, HGD integrates various annotations from public resources, including 16 909 homologs with traits, 276 670 homologs with variants, 398 573 homologs with expression and 536 852 homologs with gene ontology (GO) annotations. HGD provides a wide range of omics gene function annotations to help users gain a deeper understanding of gene function.


Subject(s)
Databases, Genetic , Animals , Molecular Sequence Annotation
10.
Sci Total Environ ; 858(Pt 1): 159788, 2023 Feb 01.
Article in English | MEDLINE | ID: mdl-36309277

ABSTRACT

As one of the fourth-generation fluoroquinolone antibiotics, moxifloxacin (MOX) has been frequently released to the aquatic environment, threatening local organisms. However, researches on its ecotoxicity to aquatic organisms are still limited. This study analyzed effects of MOX on the growth, photosynthesis and oxidative stress of two common types of freshwater microalgae, Chlorella sorokiniana and Scenedesmus dimorphus. The 96 h-EC50 values of MOX for C. sorokiniana and S. dimorphus were 28.42 and 26.37 mg/L, respectively. Although variations of specific indicators for photosynthetic fluorescence intensity were different, photosystems of two types of microalgae were irreversibly damaged. The malondialdehyde content and superoxide dismutase of C. sorokiniana and S. dimorphus evidently increased, indicating that the exposure of MOX caused serious oxidative stress. Chlorophyll a, b and carotenoids contents of C. sorokiniana increased, probably resulting from the resistance to oxidative stress, whereas they were inhibited due to oxidation damage as for S. dimorphus. Risk quotients (RQs) of MOX for C. sorokiniana and S. dimorphus in wastewater were 7.882 and 8.495, respectively, which demonstrated that MOX had a considerable risk to aquatic environment, especially in the context of its increasing use in practice.


Subject(s)
Chlorella , Chlorophyceae , Microalgae , Scenedesmus , Antioxidants/pharmacology , Moxifloxacin/toxicity , Chlorophyll A , Fresh Water
11.
IEEE J Biomed Health Inform ; 27(2): 756-767, 2023 02.
Article in English | MEDLINE | ID: mdl-36063504

ABSTRACT

A plethora of healthcare data is produced every day due to the proliferation of prominent technologies such as Internet of Medical Things (IoMT). Digital-driven smart devices like wearable watches, wristbands and bracelets are utilized extensively in modern healthcare applications. Mining valuable information from the data distributed at the owners' level is useful, but it is challenging to preserve data privacy. Federated learning (FL) has swiftly surged in popularity due to its efficacy in dealing privacy vulnerabilities. Recent studies have demonstrated that Gradient Inversion Attack (GIA) can reconstruct the input data by leaked gradients, previous work demonstrated the achievement of GIA in very limited scenarios, such as the label repetition rate of the target sample being low and batch sizes being smaller than 48. In this paper, a novel method of End-to-End Gradient Inversion (E2EGI) is proposed. Compared to the state-of-the-art method, E2EGI's Minimum Loss Combinatorial Optimization (MLCO) has the ability to realize reconstructed samples with higher similarity, and the Distributed Gradient Inversion algorithm can implement GIA with batch sizes of 8 to 256 on deep network models (such as ResNet-50) and ImageNet datasets. A new Label Reconstruction algorithm is developed that relies only on the gradient information of the target model, which can achieve a label reconstruction accuracy of 81% in one batch sample with a label repetition rate of 96%, a 27% improvement over the state-of-the-art method. This proposed work can underpin data security assessments for healthcare federated learning.


Subject(s)
Algorithms , Internet of Things , Humans , Privacy , Wakefulness
12.
J Clin Med ; 11(17)2022 Aug 26.
Article in English | MEDLINE | ID: mdl-36078943

ABSTRACT

It is important for clinicians to determine the risk of worsening trajectories in SSc patients. The Scleroderma Clinical Trials Consortium (SCTC) Damage Index (DI) has been developed to quantify organ damage and shows good capability for mortality and morbidity prediction in patients with SSc. This retrospective study aimed to describe the SCTC-DI in Chinese SSc patients and to find features predicting worse organ damage trajectories based on SCTC-DI. A total of 433 SSc patients who met the inclusion criteria in the Peking University Third Hospital (PKUTH-SSc) and People's Hospital SSc cohort (PKUPH-SSc) were recruited for our study. Organ damage was relatively mild in our Chinese SSc cohort compared to other cohorts, with a mean SCTC-DI of 5.21 ± 4.60. We used both SCTC-DI ≥ 6 and ≥4 to define the high burden of organ damage and established two risk models by the LASSO algorithm, which revealed good identification of high organ damage burden (AUC = 0.689, 95% CI 0.636 to 0.742, p < 0.001 in SCTC-DI ≥ 6 model; AUC = 0.694, 95% CI 0.641 to 0.746, p < 0.001 in modified SCTC-DI ≥ 4 model). The anemia index at the baseline was included in these two models and was also independently related to organ damage progression (HR = 1.75, 95% CI 1.16 to 2.66, p = 0.008). In addition, the presence of an anti-Scl-70 autoantibody was also a predictor of progression (HR = 1.91, 95% CI 1.22 to 2.99, p = 0.005). In conclusion, anemia at the baseline was an important indicator for worse organ damage trajectories in SSc patients. We recommend using hemoglobin as a potential biomarker to evaluate organ damage in SSc patients.

13.
Front Genet ; 13: 956781, 2022.
Article in English | MEDLINE | ID: mdl-36035123

ABSTRACT

Due to the explosion of cancer genome data and the urgent needs for cancer treatment, it is becoming increasingly important and necessary to easily and timely analyze and annotate cancer genomes. However, tumor heterogeneity is recognized as a serious barrier to annotate cancer genomes at the individual patient level. In addition, the interpretation and analysis of cancer multi-omics data rely heavily on existing database resources that are often located in different data centers or research institutions, which poses a huge challenge for data parsing. Here we present CCAS (Cancer genome Consensus Annotation System, https://ngdc.cncb.ac.cn/ccas/#/home), a one-stop and comprehensive annotation system for the individual patient at multi-omics level. CCAS integrates 20 widely recognized resources in the field to support data annotation of 10 categories of cancers covering 395 subtypes. Data from each resource are manually curated and standardized by using ontology frameworks. CCAS accepts data on single nucleotide variant/insertion or deletion, expression, copy number variation, and methylation level as input files to build a consensus annotation. Outputs are arranged in the forms of tables or figures and can be searched, sorted, and downloaded. Expanded panels with additional information are used for conciseness, and most figures are interactive to show additional information. Moreover, CCAS offers multidimensional annotation information, including mutation signature pattern, gene set enrichment analysis, pathways and clinical trial related information. These are helpful for intuitively understanding the molecular mechanisms of tumors and discovering key functional genes.

14.
Heliyon ; 8(7): e09844, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35815122

ABSTRACT

The aim of the study was to investigate the application of algal-bacterial granules in treatment of high ammonia wastewater. Two identical cylindrical reactors, i.e., Rc and Rs was used to develop granular sludge system with synthetic biogas slurry. Rs was run under an artificial solar lamp controlled at 12 h power on and 12 h power off (∼10,000 lux); Rc was operated as control (no light). Results showed that algal-bacterial granules (ABGS) developed in Rs exhibited better structural stability in the face of high ammonia influent. Compared with aerobic granules (AGS), ABGS possessed high proteins (PN) content (145.3 mg/g-VSS) in extracellular polymeric substances (EPS) and better O2 mass transfer inner granules. Higher phosphorus (P) removal capacity was obtained in Rs even under 400 mg/L NH3-N which resulted in higher P content in ABGS biomass (56.4 mg/g-TSS). Bioavailable P in ABGS was 44 mg P/g-SS on day 160, approximately 1.53-times higher than that in AGS.

15.
J Hazard Mater ; 434: 128932, 2022 07 15.
Article in English | MEDLINE | ID: mdl-35460998

ABSTRACT

Both sulfonamides (SAs) and copper (Cu(II)) were frequently detected together in swine wastewater. In this study, the regulation of Cu(II) on SAs adsorption and release of dissolved organic matters (DOMs) by fungi-microalgae pellets (FM-pellets) were investigated. Aspergillus oryzae pellets were prepared for combination with Chlorella vulgaris and the optimal conditions were at agitation speed of 130 rpm, fungi to microalgae ratio of 10:1 and the combined time of 3 h with the highest combination efficiency of 98.65%. The results showed that adsorption was the main mechanism for SAs removal. FM-pellets exhibited a high SAs adsorption potential within 6 h, and the adsorption capacity of sulfamethazine (SMZ), sulfamonomethoxine (SMM) and sulfamethoxazole (SMX) was 1.07, 0.94 and 1.67 mg/g, respectively. Furthermore, the removal of SMX, SMZ and SMM was greatly promoted from 62.31% to 85.21%, 58.71-67.91% and 64.17-80.31%, respectively, under the presence of 2 mg/L Cu(II) through ion exchange and adsorption bridging. DOMs were analyzed by the parallel factor (PARAFAC) to demonstrate the response mechanism of FM-pellets to Cu(II). Protein-like substances and NADH in DOMs released by FM-pellets formed complexes with Cu(II) to alleviate the damage on the organism. These findings provide new insights into the mechanism and response of Cu(II) in the removal of SAs by FM-pellets.


Subject(s)
Chlorella vulgaris , Microalgae , Animals , Copper , Dissolved Organic Matter , Fungi , Sulfamethazine , Sulfamethoxazole , Sulfanilamide , Sulfonamides , Swine
16.
J Healthc Eng ; 2022: 1323678, 2022.
Article in English | MEDLINE | ID: mdl-35251559

ABSTRACT

OBJECTIVE: To explore the application effect of a whole-process seamless nursing model based on the smart healthcare mode in the perioperative period of patients undergoing hematoma removal. METHODS: In this retrospective study, 50 patients with hematoma removal admitted to our hospital from August 2018 to August 2019 were included as the control group (CG), while 50 patients with hematoma removal admitted to our hospital from September 2019 to September 2020 were included as the experimental group (EG). During the period of hematoma removal, CG received routine perioperative nursing, while EG received the whole-process seamless nursing model based on the smart healthcare mode. The perioperative indexes, hemodynamic indexes, and the incidence of postoperative complications were compared between the two groups, and the incidence of nursing staff's work omissions in different periods was analyzed. RESULTS: Notable differences were observed in surgical time, intraoperative blood loss, hematoma clearance rates, length of ICU stay, hospitalization time, removal time of ventricular drainage tube, and cerebral edema volume at 1 week after surgery between EG and CG (P < 0.05). Compared with CG, EG achieved obviously better hemodynamic indexes (P < 0.001) and a lower incidence of bedsore, muscle atrophy, and eating/swallowing disorders (P < 0.05). During the implementation of smart healthcare, the incidence of nursing staff's work omissions was remarkably reduced (P < 0.05). CONCLUSION: Under the smart healthcare, the incidence of nursing staff's work omissions is lower, and the effect of the whole-process seamless nursing is better, which can optimize the perioperative indexes of patients, stabilize the postoperative hemodynamics, and reduce the incidence of complications. Therefore, the whole-process seamless nursing model based on the smart healthcare mode has promotion value in clinic.


Subject(s)
Delivery of Health Care , Hematoma , Hematoma/etiology , Humans , Models, Nursing , Perioperative Period/adverse effects , Retrospective Studies
17.
Chemistry ; 28(27): e202104588, 2022 May 11.
Article in English | MEDLINE | ID: mdl-35253287

ABSTRACT

Catalyst wettability regulation has emerged as an attractive approach for high catalytic performance for the past few years. By introducing appropriate wettability, the molecule diffusion of reactants and products can be enhanced, leading to high activity. Besides this, undesired molecules are isolated for high selectivity of target products and long-term stability of catalyst. Herein, we summarize wettability-induced high-performance heterogeneous thermocatalysis in recent years, including hydrophilicity, hydrophobicity, hybrid hydrophilicity-hydrophobicity, amphiphilicity, and superaerophilicity. Relevant reactions are further classified and described according to the reason for the performance improvement. It should be pointed out that studies of utilizing superaerophilicity to improve heterogeneous thermocatalytic performance have been included for the first time, so this is a comparatively comprehensive review in this field as yet.


Subject(s)
Wettability , Catalysis , Hydrophobic and Hydrophilic Interactions
18.
Environ Sci Pollut Res Int ; 29(34): 51989-52002, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35257335

ABSTRACT

The low-cost composite of g-C3N4 modified by Zn-doped SnO2 nanoparticles was prepared for the first time in this work. The characterization results of XRD and SEM demonstrated that Zn was successfully doped into SnO2. The formed Sn-O-Zn bonds and interaction between the Zn-doped SnO2 sample and g-C3N4 in the composite were explored by FT-IR and XPS technologies. Photocatalytic degradation experiments showed that the as-prepared optimal composite photocatalyst displayed enhanced photocatalytic reactivity towards both dyes and antibiotics, which could degrade 85.6% of RhB and 86.8% of tetracycline within 30 and 90 min, respectively. The oxygen vacancies formed in SnO2 after Zn doping could capture the photogenerated electrons of g-C3N4, thereby promoting the separation of photogenerated electron-hole pairs, then more ·O2- and holes can be generated during the visible light-driven photocatalytic reaction, so that the composite of Zn-doped SnO2/g-C3N4 acquired higher photocatalytic activity and accelerated the degradation of target organics. Active species capturing experiments and ESR detection results also confirmed that ·O2- and holes were the main active species in the reaction process. This work developed a novel g-C3N4-based photocatalyst with no noble metal, low price, and high photocatalytic activity, which could provide a cost-effective and high-efficiency strategy for wastewater treatment.


Subject(s)
Light , Water Purification , Anti-Bacterial Agents , Catalysis , Spectroscopy, Fourier Transform Infrared , Water Purification/methods , Zinc
19.
Environ Res ; 209: 112732, 2022 06.
Article in English | MEDLINE | ID: mdl-35077715

ABSTRACT

Decomposing cyanobacterial bloom-induced black blooms been seen as an issue in the management of freshwater ecosystems, but its effect on sulfate-reducing bacteria (SRB) in shallow freshwater lakes is not clear. The objective of this study is to present an in-depth investigation of black bloom effects on the activities and composition of SRB, as well as the interactions between SRB and other bacteria. Water and surface sediments samples were collected from a shallow freshwater lake during black and non-black blooms. Sulfate reduction rates (SRRs) in the water column were determined from the linear regression of sulfate depletion with time. Quantitative real-time polymerase chain reactions (qPCRs), targeting the dsrA gene and Illumina sequencing of 16S rDNA, were used to estimate the SRB population and SRB community structures, respectively. Our data indicate that although a higher abundance of SRB was responsible for the higher SRR in the bottom water (34.09 ±â€¯2.37 nmol mL-1 day-1) than in the surface water (14.57 ±â€¯2.91 nmol mL-1 day-1) during black blooms, cell-specific sulfate reduction rates (csSRRs) in the distinct water layers were not significantly different (P = 0.95), with the value of approximately 0.017 fmol cell-1 day-1. Additionally, Desulfomicrobium and Desulfovibrio were the two main genera of SRB in the water column during black bloom season, while Desulfobulbus, Desulfobacca and Desulfatiglans genera were identified in the sediments of both the black and non-black blooms in genera pools. Each SRB genus preferentially associated with bacteria for specific functions in the bacterial co-occurrence network, regardless of whether black booms occurred or not. These results extend our knowledge on the importance of SRB during black blooms and the adaptation of SRB to environmental changes in freshwater lakes.


Subject(s)
Cyanobacteria , Lakes , Ecosystem , Eutrophication , Lakes/chemistry , Sulfates
20.
Nucleic Acids Res ; 50(D1): D1004-D1009, 2022 01 07.
Article in English | MEDLINE | ID: mdl-34718752

ABSTRACT

Epigenome-Wide Association Study (EWAS) has become a standard strategy to discover DNA methylation variation of different phenotypes. Since 2018, we have developed EWAS Atlas and EWAS Data Hub to integrate a growing volume of EWAS knowledge and data, respectively. Here, we present EWAS Open Platform (https://ngdc.cncb.ac.cn/ewas) that includes EWAS Atlas, EWAS Data Hub and the newly developed EWAS Toolkit. In the current implementation, EWAS Open Platform integrates 617 018 high-quality EWAS associations from 910 publications, covering 51 phenotypes, 275 diseases and 104 environmental factors. It also provides well-normalized DNA methylation array data and the corresponding metadata from 115 852 samples, which involve 707 tissues, 218 cell lines and 528 diseases. Taking advantage of integrated knowledge and data in EWAS Atlas and EWAS Data Hub, EWAS Open Platform equips with EWAS Toolkit, a powerful one-stop site for EWAS enrichment, annotation, and knowledge network construction and visualization. Collectively, EWAS Open Platform provides open access to EWAS knowledge, data and toolkit and thus bears great utility for a broader range of relevant research.


Subject(s)
DNA Methylation/genetics , Databases, Genetic , Epigenome/genetics , Genome-Wide Association Study , CpG Islands/genetics , Epigenesis, Genetic , Humans , Metadata , Phenotype
SELECTION OF CITATIONS
SEARCH DETAIL
...