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1.
Proc Natl Acad Sci U S A ; 119(30): e2202527119, 2022 07 26.
Article in English | MEDLINE | ID: mdl-35858428

ABSTRACT

Despite an extensive theoretical and numerical background, the translocation ratchet mechanism, which is fundamental for the transmembrane transport of biomolecules, has never been experimentally reproduced at the nanoscale. Only the Sec61 and bacterial type IV pilus pores were experimentally shown to exhibit a translocation ratchet mechanism. Here we designed a synthetic translocation ratchet and quantified its efficiency as a nanopump. We measured the translocation frequency of DNA molecules through nanoporous membranes and showed that polycations at the trans side accelerated the translocation in a ratchet-like fashion. We investigated the ratchet efficiency according to geometrical and kinetic parameters and observed the ratchet to be only dependent on the size of the DNA molecule with a power law [Formula: see text]. A threshold length of 3 kbp was observed, below which the ratchet did not operate. We interpreted this threshold in a DNA looping model, which quantitatively explained our results.


Subject(s)
DNA , Nanopores , Biological Transport , DNA/metabolism , Fimbriae, Bacterial/metabolism , Kinetics
2.
J Chem Phys ; 156(22): 224901, 2022 Jun 14.
Article in English | MEDLINE | ID: mdl-35705415

ABSTRACT

Dynamic Light Scattering (DLS) is a well-known technique to study the relaxation times of systems at equilibrium. In many soft matter systems, we actually have to consider non-equilibrium or non-stationary situations. We discuss here the principles, the signal processing techniques we developed, based on regularized inverse Laplace transform, sliding with time, and the light scattering signal acquisition, which enable us to use DLS experiments in this general situation. In this article, we show how to obtain such a time-Laplace analysis. We claim that this method can be adapted to numerous DLS experiments dealing with non-equilibrium systems so as to extract the non-stationary distribution of relaxation times. To prove that, we test this time-Laplace method on three different non-equilibrium processes or systems investigated by means of the DLS technique: the cooling kinetics of a colloidal particle solution, the sol-gel transition and the internal dynamics of a living cell nucleus.


Subject(s)
Light , Dynamic Light Scattering
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