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1.
PLoS One ; 18(8): e0290036, 2023.
Article in English | MEDLINE | ID: mdl-37566591

ABSTRACT

The negative global impacts of invasive alien species (IAS) on biodiversity are second only to habitat loss. eDNA metabarcoding allows for a faster and more comprehensive evaluation of community species composition, with a higher taxonomic resolution and less taxonomic expertise required than traditional morphological-based biosurveillance. These advantages have positioned eDNA metabarcoding as the standard method for molecular-based detection of invasive alien species, where fast and accurate detectability allows prompt responses to mitigate their adverse effects. Here, eDNA metabarcoding is used for biosurveillance of invasive alien species regulated by Canada in high-risk areas with four main objectives: i) validate the effectiveness of eDNA metabarcoding of salt trap solutions as a molecular technique for IAS detection, ii) compare detection from DNA extracts obtained from filter quarters versus whole filters, iii) benchmark two different bioinformatic pipelines (MetaWorks and mBRAVE), and iv) compare canopy and ground level trapping. eDNA from up to five IAS (Agrilus planipennis, Daktulosphaira vitifoliae, Lymantria dispar, Popillia japonica, and Trichoferus campestris) were successfully detected across years from 2017 to 2022 in southern Ontario, Canada, with successful morphological validation for all except Lymantria dispar and Trichoferus campestris. Analysis of filter quarters in contrast to whole filters was demonstrated to be insufficient for effective IAS detection in each sample. All IAS were detected in only one filter quarter, suggesting a patchy eDNA distribution on the filter. The MetaWorks and mBRAVE bioinformatics pipelines proved effective in identifying IAS, with MetaWorks yielding a higher success rate when comparing molecular and morphological identifications. Ground-level and canopy-level sampling showed differential IAS recovery rates based on the molecular detection, which also varied per collection year, with all found IAS detected at the canopy level in 2022 while only one (Lymantria dispar) in 2020. The present study ratifies the efficacy and importance of eDNA-based detection in a regulatory context and the utility of adding eDNA metabarcoding of saturated salt trap solutions, a critical tool for IAS detection.


Subject(s)
Biosurveillance , DNA, Environmental , Animals , DNA Barcoding, Taxonomic/methods , Biodiversity , Ecosystem , DNA, Environmental/genetics , Plants , Introduced Species , Insecta , Ontario , Environmental Monitoring/methods
2.
Sci Rep ; 12(1): 1734, 2022 02 02.
Article in English | MEDLINE | ID: mdl-35110598

ABSTRACT

Tropical forests are among the most biodiverse biomes on the planet. Nevertheless, quantifying the abundance and species richness within megadiverse groups is a significant challenge. We designed a study to address this challenge by documenting the variability of the insect fauna across a vertical canopy gradient in a Central Amazonian tropical forest. Insects were sampled over two weeks using 6-m Gressitt-style Malaise traps set at five heights (0 m-32 m-8 m intervals) on a metal tower in a tropical forest north of Manaus, Brazil. The traps contained 37,778 specimens of 18 orders of insects. Using simulation approaches and nonparametric analyses, we interpreted the abundance and richness of insects along this gradient. Diptera, Hymenoptera, and Coleoptera had their greatest abundance at the ground level, whereas Lepidoptera and Hemiptera were more abundant in the upper levels of the canopy. We identified species of 38 of the 56 families of Diptera, finding that 527 out of 856 species (61.6%) were not sampled at the ground level. Mycetophilidae, Tipulidae, and Phoridae were significantly more diverse and/or abundant at the ground level, while Tachinidae, Dolichopodidae, and Lauxaniidae were more diverse or abundant at upper levels. Our study suggests the need for a careful discussion of strategies of tropical forest conservation based on a much more complete understanding of the three-dimensional distribution of its insect diversity.


Subject(s)
Ecosystem , Insecta/classification , Rainforest , Animals , Biodiversity , Brazil , Conservation of Natural Resources , Tropical Climate
3.
Zootaxa ; 4651(3): zootaxa.4651.3.7, 2019 Aug 06.
Article in English | MEDLINE | ID: mdl-31716901

ABSTRACT

The five Central American and Mexican species belonging to the Curtonotum murinum species complex are described as Curtonotum abrelatas Lindsay sp. nov., C. irksum Lindsay sp. nov., C. notatum Lindsay sp. nov., C. prolixum Lindsay sp. nov. and C. transitus Lindsay sp. nov. Photographic images, a distribution map of species and an identification key are provided.


Subject(s)
Diptera , Animal Distribution , Animal Structures , Animals , United States
4.
J Am Anim Hosp Assoc ; 53(6): 313-320, 2017.
Article in English | MEDLINE | ID: mdl-28892422

ABSTRACT

This is a retrospective case series of 27 dogs with emphysematous cystitis. Medical records from two veterinary teaching hospitals from 1992 to 2014 were reviewed. The aims of the study were to determine imaging findings, common underlying disease processes, and prevalent bacterial species and their antimicrobial susceptibility patterns in dogs with emphysematous cystitis. The most common lower urinary tract sign was hematuria. Gas was detected in the wall and lumen of the urinary bladder in 14 of 27 dogs (51.9%), in only the wall of the bladder in 9 of 27 dogs (33%), and in only the lumen of the bladder in 4 of 27 dogs (14.8%). Comorbid diseases were identified in all but one case. The most common comorbid disease processes were diabetes mellitus in 33% of dogs, neurologic disease in 26% of dogs, and adrenal disease in 19% of dogs. Bacterial isolates included Escherichia coli, Enterococcus spp., Klebsiella pneumoniae, Proteus mirabilis, Streptococcus spp., and Actinomyces spp. Enterococcus spp. were always isolated in mixed infections with gas-producing bacterial species. During the period of study, most isolates were predicted to be susceptible to beta-lactam drugs, but updated veterinary breakpoints suggest that fluoroquinolones or trimethoprim-sulfamethoxazole would be more appropriate choices for empiric therapy.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Cystitis/veterinary , Dog Diseases/diagnosis , Microbial Sensitivity Tests/veterinary , Animals , Anti-Bacterial Agents/pharmacology , Dog Diseases/drug therapy , Dog Diseases/microbiology , Dogs , Retrospective Studies
5.
Health Place ; 28: 50-7, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24747878

ABSTRACT

The built environment is important for children׳s health and development. Qualitative research in four communities in Scotland explored with groups of parents of young children their lay perceptions of their local environment with specific reference to its impact upon their children׳s health. Valuing most strong supportive communities; good quality public spaces and social housing, parents׳ key concerns included anti-social behaviour, incivility and a range of locally-specific concerns. As knowledgeable key gatekeepers to children׳s use of home environments and public spaces, parent׳s qualitative lay input is important for the development of children׳s effective use of outdoor spaces and the built environment over the long term.


Subject(s)
Environment Design , Parents/psychology , Perception , Residence Characteristics , Adult , Female , Health , Humans , Male , Play and Playthings , Pregnancy , Qualitative Research , Safety , Scotland , Social Support , Young Adult
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